RNA–Protein interactions for RNA: ENST00000512946.5

LIMCH1-217, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 5,057 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-217ENST00000512946 ATP1B1P05026 303 aa10.55□□□□□ -0.72
LIMCH1-217ENST00000512946 GNSP15586 552 aa10.55□□□□□ -0.72
LIMCH1-217ENST00000512946 HOXD11P31277 338 aaPredicted RBP10.55□□□□□ -0.72
LIMCH1-217ENST00000512946 SSTR4P31391 388 aa10.55□□□□□ -0.72
LIMCH1-217ENST00000512946 PTTG1IPP53801 180 aa10.55□□□□□ -0.72
LIMCH1-217ENST00000512946 KIAA1024LP59773 190 aa10.55□□□□□ -0.72
LIMCH1-217ENST00000512946 MAP2K5Q13163 448 aa10.55□□□□□ -0.72
LIMCH1-217ENST00000512946 CLPPQ16740 277 aaPredicted RBP10.55□□□□□ -0.72
LIMCH1-217ENST00000512946 CATSPEREQ5SY80 951 aa10.55□□□□□ -0.72
LIMCH1-217ENST00000512946 PELI2Q9HAT8 420 aa10.55□□□□□ -0.72
LIMCH1-217ENST00000512946 TAF9BQ9HBM6 251 aa10.55□□□□□ -0.72
LIMCH1-217ENST00000512946 KLHL42Q9P2K6 505 aa10.55□□□□□ -0.72
LIMCH1-217ENST00000512946 PSORS1C1Q9UIG5 152 aa10.55□□□□□ -0.72
LIMCH1-217ENST00000512946 ACAD8Q9UKU7 415 aa10.55□□□□□ -0.72
LIMCH1-217ENST00000512946 H3BSH0 61 aa10.55□□□□□ -0.72
LIMCH1-217ENST00000512946 S1PR4O95977 384 aa10.55□□□□□ -0.72
LIMCH1-217ENST00000512946 FUCA1P04066 466 aa10.55□□□□□ -0.72
LIMCH1-217ENST00000512946 USF1P22415 310 aaPredicted RBP10.55□□□□□ -0.72
LIMCH1-217ENST00000512946 AADACP22760 399 aa10.55□□□□□ -0.72
LIMCH1-217ENST00000512946 RAB13P51153 203 aa10.55□□□□□ -0.72
LIMCH1-217ENST00000512946 TRA2BP62995 288 aaKnown RBP10.55□□□□□ -0.72
LIMCH1-217ENST00000512946 ARL16Q0P5N6 197 aa10.55□□□□□ -0.72
LIMCH1-217ENST00000512946 PGGHGQ32M88 737 aa10.55□□□□□ -0.72
LIMCH1-217ENST00000512946 RGMBQ6NW40 437 aa10.55□□□□□ -0.72
LIMCH1-217ENST00000512946 STEAP1BQ6NZ63 245 aa10.55□□□□□ -0.72
LIMCH1-217ENST00000512946 SERINC5Q86VE9 423 aa10.55□□□□□ -0.72
LIMCH1-217ENST00000512946 CPNE8Q86YQ8 564 aa10.55□□□□□ -0.72
LIMCH1-217ENST00000512946 PQLC3Q8N755 202 aa10.55□□□□□ -0.72
LIMCH1-217ENST00000512946 RASD2Q96D21 266 aa10.55□□□□□ -0.72
LIMCH1-217ENST00000512946 BORCS6Q96GS4 357 aa10.55□□□□□ -0.72
LIMCH1-217ENST00000512946 MSLNLQ96KJ4 702 aa10.55□□□□□ -0.72
LIMCH1-217ENST00000512946 MYADMQ96S97 322 aa10.55□□□□□ -0.72
LIMCH1-217ENST00000512946 CLSTN3Q9BQT9 956 aa10.55□□□□□ -0.72
LIMCH1-217ENST00000512946 VAMP8Q9BV40 100 aa10.55□□□□□ -0.72
LIMCH1-217ENST00000512946 TXLNGYQ9BZA5 131 aa10.55□□□□□ -0.72
LIMCH1-217ENST00000512946 ACSS1Q9NUB1 689 aaPredicted RBP10.55□□□□□ -0.72
LIMCH1-217ENST00000512946 GIMAP2Q9UG22 337 aa10.55□□□□□ -0.72
LIMCH1-217ENST00000512946 OSGIN2Q9Y236 505 aa10.55□□□□□ -0.72
LIMCH1-217ENST00000512946 MYBPHLA2RUH7 354 aa10.55□□□□□ -0.72
LIMCH1-217ENST00000512946 UMAD1C9J7I0 102 aa10.55□□□□□ -0.72
LIMCH1-217ENST00000512946 ALPLP05186 524 aa10.55□□□□□ -0.72
LIMCH1-217ENST00000512946 SFTPDP35247 375 aa10.55□□□□□ -0.72
LIMCH1-217ENST00000512946 HTR3AP46098 478 aa10.55□□□□□ -0.72
LIMCH1-217ENST00000512946 ZNF91Q05481 1191 aa10.55□□□□□ -0.72
LIMCH1-217ENST00000512946 NFATC2Q13469 925 aa10.55□□□□□ -0.72
LIMCH1-217ENST00000512946 SOWAHAQ2M3V2 549 aa10.55□□□□□ -0.72
LIMCH1-217ENST00000512946 TP53I3Q53FA7 332 aa10.55□□□□□ -0.72
LIMCH1-217ENST00000512946 SFRP5Q5T4F7 317 aa10.55□□□□□ -0.72
LIMCH1-217ENST00000512946 TMEM239Q8WW34 195 aa10.55□□□□□ -0.72
LIMCH1-217ENST00000512946 ZNF689Q96CS4 500 aaPredicted RBP10.55□□□□□ -0.72
LIMCH1-217ENST00000512946 MS4A4EQ96PG1 132 aa10.55□□□□□ -0.72
LIMCH1-217ENST00000512946 DCLRE1CQ96SD1 692 aaKnown RBP10.55□□□□□ -0.72
LIMCH1-217ENST00000512946 ACOXLQ9NUZ1 547 aa10.55□□□□□ -0.72
LIMCH1-217ENST00000512946 KCMF1Q9P0J7 381 aa10.55□□□□□ -0.72
LIMCH1-217ENST00000512946 DIMT1Q9UNQ2 313 aaKnown RBP10.55□□□□□ -0.72
LIMCH1-217ENST00000512946 SNRPGP15A8MWD9 76 aa10.55□□□□□ -0.72
LIMCH1-217ENST00000512946 SLC16A6O15403 523 aa10.55□□□□□ -0.72
LIMCH1-217ENST00000512946 VNN1O95497 513 aa10.55□□□□□ -0.72
LIMCH1-217ENST00000512946 CHRM2P08172 466 aa10.55□□□□□ -0.72
LIMCH1-217ENST00000512946 ADRA2CP18825 462 aa10.55□□□□□ -0.72
LIMCH1-217ENST00000512946 POU3F3P20264 500 aaPredicted RBP10.55□□□□□ -0.72
LIMCH1-217ENST00000512946 ZP3P21754 424 aa10.55□□□□□ -0.72
LIMCH1-217ENST00000512946 SOX18P35713 384 aa10.55□□□□□ -0.72
LIMCH1-217ENST00000512946 KCNJ5P48544 419 aa10.55□□□□□ -0.72
LIMCH1-217ENST00000512946 RAB28P51157 221 aa10.55□□□□□ -0.72
LIMCH1-217ENST00000512946 FOXK1P85037 733 aa10.55□□□□□ -0.72
LIMCH1-217ENST00000512946 HSF1Q00613 529 aa10.55□□□□□ -0.72
LIMCH1-217ENST00000512946 TIGD5Q53EQ6 642 aa10.55□□□□□ -0.72
LIMCH1-217ENST00000512946 CNTN4Q8IWV2 1026 aa10.55□□□□□ -0.72
LIMCH1-217ENST00000512946 PRSS58Q8IYP2 241 aa10.55□□□□□ -0.72
LIMCH1-217ENST00000512946 CADM3Q8N126 398 aa10.55□□□□□ -0.72
LIMCH1-217ENST00000512946 NKAIN3Q8N8D7 197 aa10.55□□□□□ -0.72
LIMCH1-217ENST00000512946 NAXEQ8NCW5 288 aa10.55□□□□□ -0.72
LIMCH1-217ENST00000512946 SCLYQ96I15 445 aa10.55□□□□□ -0.72
LIMCH1-217ENST00000512946 SGIP1Q9BQI5 828 aa10.55□□□□□ -0.72
LIMCH1-217ENST00000512946 BET1LQ9NYM9 111 aa10.55□□□□□ -0.72
LIMCH1-217ENST00000512946 MEIS3P2A8K0S8 358 aa10.54□□□□□ -0.72
LIMCH1-217ENST00000512946 B4GALT2O60909 372 aa10.54□□□□□ -0.72
LIMCH1-217ENST00000512946 GZMKP49863 264 aa10.54□□□□□ -0.72
LIMCH1-217ENST00000512946 SLC10A6Q3KNW5 377 aa10.54□□□□□ -0.72
LIMCH1-217ENST00000512946 CLLU1Q5K131 121 aa10.54□□□□□ -0.72
LIMCH1-217ENST00000512946 ZNF648Q5T619 568 aaPredicted RBP10.54□□□□□ -0.72
LIMCH1-217ENST00000512946 C18orf63Q68DL7 685 aa10.54□□□□□ -0.72
LIMCH1-217ENST00000512946 ZNF322Q6U7Q0 402 aaPredicted RBP10.54□□□□□ -0.72
LIMCH1-217ENST00000512946 C5orf46Q6UWT4 87 aa10.54□□□□□ -0.72
LIMCH1-217ENST00000512946 OR9K2Q8NGE7 335 aa10.54□□□□□ -0.72
LIMCH1-217ENST00000512946 SLC22A12Q96S37 553 aa10.54□□□□□ -0.72
LIMCH1-217ENST00000512946 METTL9Q9H1A3 318 aa10.54□□□□□ -0.72
LIMCH1-217ENST00000512946 OR51I2Q9H344 312 aa10.54□□□□□ -0.72
LIMCH1-217ENST00000512946 PDE7BQ9NP56 450 aa10.54□□□□□ -0.72
LIMCH1-217ENST00000512946 TLR9Q9NR96 1032 aa10.54□□□□□ -0.72
LIMCH1-217ENST00000512946 MUTYHQ9UIF7 546 aa10.54□□□□□ -0.72
LIMCH1-217ENST00000512946 GMEB2Q9UKD1 530 aa10.54□□□□□ -0.72
LIMCH1-217ENST00000512946 SLC35A3Q9Y2D2 325 aa10.54□□□□□ -0.72
LIMCH1-217ENST00000512946 KDM4FA0A1W2PPD8 638 aa10.54□□□□□ -0.72
LIMCH1-217ENST00000512946 GATCO43716 136 aaKnown RBP10.54□□□□□ -0.72
LIMCH1-217ENST00000512946 OR2T7P0C7T2 308 aa10.54□□□□□ -0.72
LIMCH1-217ENST00000512946 C8orf89P0DMQ9 161 aa10.54□□□□□ -0.72
LIMCH1-217ENST00000512946 NAGAP17050 411 aa10.54□□□□□ -0.72
LIMCH1-217ENST00000512946 RPS18P62269 152 aaKnown RBP10.54□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 47.1 ms