RNA–Protein interactions for RNA: ENST00000498213.1

USP54-217, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 4

Gene USP54, Length 815 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-217ENST00000498213 MARCH4Q9P2E8 410 aaPredicted RBP3.49□□□□□ -1.85
USP54-217ENST00000498213 SLC2A6Q9UGQ3 507 aa3.49□□□□□ -1.85
USP54-217ENST00000498213 PHF11Q9UIL8 331 aa3.49□□□□□ -1.85
USP54-217ENST00000498213 PDE10AQ9Y233 779 aa3.49□□□□□ -1.85
USP54-217ENST00000498213 PPP2R2CQ9Y2T4 447 aa3.49□□□□□ -1.85
USP54-217ENST00000498213 HYOU1Q9Y4L1 999 aa3.49□□□□□ -1.85
USP54-217ENST00000498213 ATG4BQ9Y4P1 393 aa3.49□□□□□ -1.85
USP54-217ENST00000498213 HEATR5BQ9P2D3 2071 aa3.48□□□□□ -1.85
USP54-217ENST00000498213 CR1P17927 2039 aa3.48□□□□□ -1.85
USP54-217ENST00000498213 SACSQ9NZJ4 4579 aa3.48□□□□□ -1.85
USP54-217ENST00000498213 GOLGA6L10A0A0M3HER8 536 aa3.48□□□□□ -1.85
USP54-217ENST00000498213 OR51F1A6NGY5 319 aa3.48□□□□□ -1.85
USP54-217ENST00000498213 ANKDD1BA6NHY2 528 aa3.48□□□□□ -1.85
USP54-217ENST00000498213 NPIPB13A6NJU9 1138 aa3.48□□□□□ -1.85
USP54-217ENST00000498213 NPIPB5A8MRT5 1133 aa3.48□□□□□ -1.85
USP54-217ENST00000498213 FAM157AC9JC47 383 aa3.48□□□□□ -1.85
USP54-217ENST00000498213 NPIPB4C9JG80 1138 aa3.48□□□□□ -1.85
USP54-217ENST00000498213 BCAS2O75934 225 aaPredicted RBP3.48□□□□□ -1.85
USP54-217ENST00000498213 OR2J2O76002 312 aa3.48□□□□□ -1.85
USP54-217ENST00000498213 RCBTB2O95199 551 aa3.48□□□□□ -1.85
USP54-217ENST00000498213 IGKV3-11P04433 115 aa3.48□□□□□ -1.85
USP54-217ENST00000498213 IFI6P09912 130 aa3.48□□□□□ -1.85
USP54-217ENST00000498213 PRSS56P0CW18 603 aa3.48□□□□□ -1.85
USP54-217ENST00000498213 C1GALT1C1LP0DN25 315 aa3.48□□□□□ -1.85
USP54-217ENST00000498213 HIST1H1TP22492 207 aaPredicted RBP3.48□□□□□ -1.85
USP54-217ENST00000498213 PAX7P23759 505 aa3.48□□□□□ -1.85
USP54-217ENST00000498213 NMBRP28336 390 aa3.48□□□□□ -1.85
USP54-217ENST00000498213 RPL22P35268 128 aaKnown RBP3.48□□□□□ -1.85
USP54-217ENST00000498213 SERPINF1P36955 418 aa3.48□□□□□ -1.85
USP54-217ENST00000498213 MSH2P43246 934 aa3.48□□□□□ -1.85
USP54-217ENST00000498213 SLC6A12P48065 614 aa3.48□□□□□ -1.85
USP54-217ENST00000498213 NUDT6P53370 316 aa3.48□□□□□ -1.85
USP54-217ENST00000498213 CSE1LP55060 971 aaKnown RBP3.48□□□□□ -1.85
USP54-217ENST00000498213 RPL36AP83881 106 aaKnown RBP3.48□□□□□ -1.85
USP54-217ENST00000498213 NAE1Q13564 534 aa3.48□□□□□ -1.85
USP54-217ENST00000498213 BLMHQ13867 455 aa3.48□□□□□ -1.85
USP54-217ENST00000498213 GANABQ14697 944 aaKnown RBP3.48□□□□□ -1.85
USP54-217ENST00000498213 NTRK2Q16620 822 aa3.48□□□□□ -1.85
USP54-217ENST00000498213 SYT16Q17RD7 645 aa3.48□□□□□ -1.85
USP54-217ENST00000498213 CCSMST1Q4G0I0 132 aa3.48□□□□□ -1.85
USP54-217ENST00000498213 ACSF3Q4G176 576 aaPredicted RBP3.48□□□□□ -1.85
USP54-217ENST00000498213 CYB5R2Q6BCY4 276 aa3.48□□□□□ -1.85
USP54-217ENST00000498213 SULT1C3Q6IMI6 304 aa3.48□□□□□ -1.85
USP54-217ENST00000498213 SLC30A6Q6NXT4 461 aa3.48□□□□□ -1.85
USP54-217ENST00000498213 Q6ZSV7 163 aa3.48□□□□□ -1.85
USP54-217ENST00000498213 CA13Q8N1Q1 262 aa3.48□□□□□ -1.85
USP54-217ENST00000498213 RASGEF1CQ8N431 466 aa3.48□□□□□ -1.85
USP54-217ENST00000498213 C2orf73Q8N5S3 287 aaPredicted RBP3.48□□□□□ -1.85
USP54-217ENST00000498213 TMEM251Q8N6I4 163 aa3.48□□□□□ -1.85
USP54-217ENST00000498213 NAXEQ8NCW5 288 aa3.48□□□□□ -1.85
USP54-217ENST00000498213 BBOF1Q8ND07 529 aa3.48□□□□□ -1.85
USP54-217ENST00000498213 OR7G1Q8NGA0 311 aa3.48□□□□□ -1.85
USP54-217ENST00000498213 NEIL2Q969S2 332 aa3.48□□□□□ -1.85
USP54-217ENST00000498213 MS4A6EQ96DS6 147 aa3.48□□□□□ -1.85
USP54-217ENST00000498213 GPR21Q99679 349 aa3.48□□□□□ -1.85
USP54-217ENST00000498213 NRTNQ99748 197 aa3.48□□□□□ -1.85
USP54-217ENST00000498213 SLC39A3Q9BRY0 314 aa3.48□□□□□ -1.85
USP54-217ENST00000498213 UBQLN3Q9H347 655 aa3.48□□□□□ -1.85
USP54-217ENST00000498213 CXorf56Q9H5V9 222 aa3.48□□□□□ -1.85
USP54-217ENST00000498213 COPS7BQ9H9Q2 264 aaPredicted RBP3.48□□□□□ -1.85
USP54-217ENST00000498213 WDR41Q9HAD4 459 aa3.48□□□□□ -1.85
USP54-217ENST00000498213 EML4Q9HC35 981 aaKnown RBP3.48□□□□□ -1.85
USP54-217ENST00000498213 LZTFL1Q9NQ48 299 aa3.48□□□□□ -1.85
USP54-217ENST00000498213 GLRX2Q9NS18 164 aa3.48□□□□□ -1.85
USP54-217ENST00000498213 C20orf96Q9NUD7 363 aaPredicted RBP3.48□□□□□ -1.85
USP54-217ENST00000498213 IL36RNQ9UBH0 155 aa3.48□□□□□ -1.85
USP54-217ENST00000498213 FBXW2Q9UKT8 454 aa3.48□□□□□ -1.85
USP54-217ENST00000498213 DLGAP4Q9Y2H0 992 aa3.48□□□□□ -1.85
USP54-217ENST00000498213 OARD1Q9Y530 152 aa3.48□□□□□ -1.85
USP54-217ENST00000498213 PHF3Q92576 2039 aaKnown RBP3.48□□□□□ -1.85
USP54-217ENST00000498213 IGHV3-20A0A0C4DH32 117 aa3.47□□□□□ -1.85
USP54-217ENST00000498213 IQANK1A0A1B0GTG1 560 aa3.47□□□□□ -1.85
USP54-217ENST00000498213 TTC36A6NLP5 189 aa3.47□□□□□ -1.85
USP54-217ENST00000498213 DEFB108AA8MXU0 73 aa3.47□□□□□ -1.85
USP54-217ENST00000498213 C17orf105B2RV13 164 aa3.47□□□□□ -1.85
USP54-217ENST00000498213 EEF1E1-BLOC1S5C9J1V9 151 aa3.47□□□□□ -1.85
USP54-217ENST00000498213 CLGNO14967 610 aa3.47□□□□□ -1.85
USP54-217ENST00000498213 EEF1E1O43324 174 aaKnown RBP3.47□□□□□ -1.85
USP54-217ENST00000498213 ITM2AO43736 263 aa3.47□□□□□ -1.85
USP54-217ENST00000498213 LCMT2O60294 686 aaKnown RBP3.47□□□□□ -1.85
USP54-217ENST00000498213 B4GALT2O60909 372 aa3.47□□□□□ -1.85
USP54-217ENST00000498213 NDUFS7O75251 213 aa3.47□□□□□ -1.85
USP54-217ENST00000498213 TRIM3O75382 744 aaPredicted RBP3.47□□□□□ -1.85
USP54-217ENST00000498213 CBR3O75828 277 aa3.47□□□□□ -1.85
USP54-217ENST00000498213 SEMA3DO95025 777 aa3.47□□□□□ -1.85
USP54-217ENST00000498213 CSTBP04080 98 aaKnown RBP3.47□□□□□ -1.85
USP54-217ENST00000498213 GSTA2P09210 222 aa3.47□□□□□ -1.85
USP54-217ENST00000498213 SLC35E2BP0CK96 405 aa3.47□□□□□ -1.85
USP54-217ENST00000498213 SLC35E2P0CK97 266 aa3.47□□□□□ -1.85
USP54-217ENST00000498213 FCGR1AP12314 374 aa3.47□□□□□ -1.85
USP54-217ENST00000498213 CDH1P12830 882 aa3.47□□□□□ -1.85
USP54-217ENST00000498213 HNF1AP20823 631 aa3.47□□□□□ -1.85
USP54-217ENST00000498213 DPP4P27487 766 aa3.47□□□□□ -1.85
USP54-217ENST00000498213 SRP14P37108 136 aaKnown RBP3.47□□□□□ -1.85
USP54-217ENST00000498213 COILP38432 576 aaPredicted RBP3.47□□□□□ -1.85
USP54-217ENST00000498213 HNF4AP41235 474 aa3.47□□□□□ -1.85
USP54-217ENST00000498213 GRIA1P42261 906 aa3.47□□□□□ -1.85
USP54-217ENST00000498213 SLC1A2P43004 574 aa3.47□□□□□ -1.85
USP54-217ENST00000498213 CDK9P50750 372 aaKnown RBP3.47□□□□□ -1.85
USP54-217ENST00000498213 LIM2P55344 173 aa3.47□□□□□ -1.85
Retrieved 100 of 20,778 RNA–protein pairs in 70.1 ms