RNA–Protein interactions for RNA: ENST00000492980.1

CCDC88B-208, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 5

Gene CCDC88B, Length 2,118 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-208ENST00000492980 FBLP22087 321 aaKnown RBP19.37■□□□□ 0.69
CCDC88B-208ENST00000492980 NOS3P29474 1203 aa19.37■□□□□ 0.69
CCDC88B-208ENST00000492980 RORAP35398 523 aa19.37■□□□□ 0.69
CCDC88B-208ENST00000492980 TGM4P49221 684 aa19.37■□□□□ 0.69
CCDC88B-208ENST00000492980 CSTF1Q05048 431 aaKnown RBP19.37■□□□□ 0.69
CCDC88B-208ENST00000492980 MXD1Q05195 221 aa19.37■□□□□ 0.69
CCDC88B-208ENST00000492980 DNASE1L3Q13609 305 aa19.37■□□□□ 0.69
CCDC88B-208ENST00000492980 CRMP1Q14194 572 aa19.37■□□□□ 0.69
CCDC88B-208ENST00000492980 CD226Q15762 336 aa19.37■□□□□ 0.69
CCDC88B-208ENST00000492980 SPANXN2Q5MJ10 180 aa19.37■□□□□ 0.69
CCDC88B-208ENST00000492980 ZNF440Q8IYI8 595 aa19.37■□□□□ 0.69
CCDC88B-208ENST00000492980 TMEM99Q8N816 258 aa19.37■□□□□ 0.69
CCDC88B-208ENST00000492980 FAM83FQ8NEG4 500 aaPredicted RBP19.37■□□□□ 0.69
CCDC88B-208ENST00000492980 SLC2A12Q8TD20 617 aa19.37■□□□□ 0.69
CCDC88B-208ENST00000492980 ZNF721Q8TF20 911 aa19.37■□□□□ 0.69
CCDC88B-208ENST00000492980 DNAJA4Q8WW22 397 aaPredicted RBP19.37■□□□□ 0.69
CCDC88B-208ENST00000492980 SGTBQ96EQ0 304 aa19.37■□□□□ 0.69
CCDC88B-208ENST00000492980 HOXD1Q9GZZ0 328 aa19.37■□□□□ 0.69
CCDC88B-208ENST00000492980 ZNF304Q9HCX3 659 aa19.37■□□□□ 0.69
CCDC88B-208ENST00000492980 POLE4Q9NR33 117 aa19.37■□□□□ 0.69
CCDC88B-208ENST00000492980 UBQLN4Q9NRR5 601 aa19.37■□□□□ 0.69
CCDC88B-208ENST00000492980 UGT2A1Q9Y4X1 527 aa19.37■□□□□ 0.69
CCDC88B-208ENST00000492980 ISPDA4D126 451 aa19.36■□□□□ 0.69
CCDC88B-208ENST00000492980 SLC22A31A6NKX4 558 aa19.36■□□□□ 0.69
CCDC88B-208ENST00000492980 CLEC2LP0C7M8 214 aa19.36■□□□□ 0.69
CCDC88B-208ENST00000492980 PEPDP12955 493 aa19.36■□□□□ 0.69
CCDC88B-208ENST00000492980 FOSL2P15408 326 aa19.36■□□□□ 0.69
CCDC88B-208ENST00000492980 ZNF3P17036 446 aa19.36■□□□□ 0.69
CCDC88B-208ENST00000492980 HK1P19367 917 aa19.36■□□□□ 0.69
CCDC88B-208ENST00000492980 SLC2A5P22732 501 aa19.36■□□□□ 0.69
CCDC88B-208ENST00000492980 ADH7P40394 386 aa19.36■□□□□ 0.69
CCDC88B-208ENST00000492980 COPZ1P61923 177 aa19.36■□□□□ 0.69
CCDC88B-208ENST00000492980 STEAP3Q658P3 488 aa19.36■□□□□ 0.69
CCDC88B-208ENST00000492980 WDR74Q6RFH5 385 aaPredicted RBP19.36■□□□□ 0.69
CCDC88B-208ENST00000492980 SLC22A16Q86VW1 577 aa19.36■□□□□ 0.69
CCDC88B-208ENST00000492980 GATSQ8NAP1 163 aa19.36■□□□□ 0.69
CCDC88B-208ENST00000492980 OIT3Q8WWZ8 545 aa19.36■□□□□ 0.69
CCDC88B-208ENST00000492980 C3orf49Q96BT1 292 aa19.36■□□□□ 0.69
CCDC88B-208ENST00000492980 TIMP4Q99727 224 aa19.36■□□□□ 0.69
CCDC88B-208ENST00000492980 MED18Q9BUE0 208 aa19.36■□□□□ 0.69
CCDC88B-208ENST00000492980 TPK1Q9H3S4 243 aa19.36■□□□□ 0.69
CCDC88B-208ENST00000492980 CAB39Q9Y376 341 aaPredicted RBP19.36■□□□□ 0.69
CCDC88B-208ENST00000492980 CLCA3PQ9Y6N3 262 aa19.36■□□□□ 0.69
CCDC88B-208ENST00000492980 IQCMA0A1B0GVH7 501 aa19.36■□□□□ 0.69
CCDC88B-208ENST00000492980 TCRBV16S1A1N1A0A5B0 115 aa19.36■□□□□ 0.69
CCDC88B-208ENST00000492980 FRG2CA6NGY1 282 aa19.36■□□□□ 0.69
CCDC88B-208ENST00000492980 OIP5O43482 229 aa19.36■□□□□ 0.69
CCDC88B-208ENST00000492980 DYRK3O43781 588 aa19.36■□□□□ 0.69
CCDC88B-208ENST00000492980 FGF9P31371 208 aaPredicted RBP19.36■□□□□ 0.69
CCDC88B-208ENST00000492980 TNFSF8P32971 234 aa19.36■□□□□ 0.69
CCDC88B-208ENST00000492980 ELAVL1Q15717 326 aaKnown RBP19.36■□□□□ 0.69
CCDC88B-208ENST00000492980 ARHGAP11AQ6P4F7 1023 aa19.36■□□□□ 0.69
CCDC88B-208ENST00000492980 Q7L0L9 218 aa19.36■□□□□ 0.69
CCDC88B-208ENST00000492980 KMT5CQ86Y97 462 aa19.36■□□□□ 0.69
CCDC88B-208ENST00000492980 KLBQ86Z14 1044 aa19.36■□□□□ 0.69
CCDC88B-208ENST00000492980 SLITRK4Q8IW52 837 aa19.36■□□□□ 0.69
CCDC88B-208ENST00000492980 ZNF527Q8NB42 609 aa19.36■□□□□ 0.69
CCDC88B-208ENST00000492980 SYT14Q8NB59 555 aa19.36■□□□□ 0.69
CCDC88B-208ENST00000492980 CEP19Q96LK0 163 aa19.36■□□□□ 0.69
CCDC88B-208ENST00000492980 TEAD3Q99594 435 aa19.36■□□□□ 0.69
CCDC88B-208ENST00000492980 ELF4Q99607 663 aaPredicted RBP19.36■□□□□ 0.69
CCDC88B-208ENST00000492980 OR51V1Q9H2C8 321 aa19.36■□□□□ 0.69
CCDC88B-208ENST00000492980 ISG20L2Q9H9L3 353 aaKnown RBP19.36■□□□□ 0.69
CCDC88B-208ENST00000492980 PCDHGB6Q9Y5F9 930 aa19.36■□□□□ 0.69
CCDC88B-208ENST00000492980 LAMA1P25391 3075 aa19.35■□□□□ 0.69
CCDC88B-208ENST00000492980 TRDV1A0A1B0GX56 115 aa19.35■□□□□ 0.69
CCDC88B-208ENST00000492980 GTF2E2P29084 291 aaKnown RBP19.35■□□□□ 0.69
CCDC88B-208ENST00000492980 SLC9A3P48764 834 aa19.35■□□□□ 0.69
CCDC88B-208ENST00000492980 RPS7P62081 194 aaKnown RBP19.35■□□□□ 0.69
CCDC88B-208ENST00000492980 RUNX1T1Q06455 604 aa19.35■□□□□ 0.69
CCDC88B-208ENST00000492980 VWA2Q5GFL6 755 aa19.35■□□□□ 0.69
CCDC88B-208ENST00000492980 VASNQ6EMK4 673 aa19.35■□□□□ 0.69
CCDC88B-208ENST00000492980 ARIH2OSQ8N7S6 290 aa19.35■□□□□ 0.69
CCDC88B-208ENST00000492980 CYB561A3Q8NBI2 242 aa19.35■□□□□ 0.69
CCDC88B-208ENST00000492980 ADIPOR1Q96A54 375 aa19.35■□□□□ 0.69
CCDC88B-208ENST00000492980 ZNF501Q96CX3 271 aaPredicted RBP19.35■□□□□ 0.69
CCDC88B-208ENST00000492980 LCORQ96JN0 433 aaPredicted RBP19.35■□□□□ 0.69
CCDC88B-208ENST00000492980 SLC30A2Q9BRI3 323 aa19.35■□□□□ 0.69
CCDC88B-208ENST00000492980 NUDT22Q9BRQ3 303 aa19.35■□□□□ 0.69
CCDC88B-208ENST00000492980 ALG8Q9BVK2 526 aa19.35■□□□□ 0.69
CCDC88B-208ENST00000492980 SERTAD3Q9UJW9 196 aa19.35■□□□□ 0.69
CCDC88B-208ENST00000492980 LRRN3E7EW58 273 aa19.34■□□□□ 0.69
CCDC88B-208ENST00000492980 REM1O75628 298 aa19.34■□□□□ 0.69
CCDC88B-208ENST00000492980 UTS2O95399 124 aa19.34■□□□□ 0.69
CCDC88B-208ENST00000492980 CLUP10909 449 aa19.34■□□□□ 0.69
CCDC88B-208ENST00000492980 CELP19835 753 aa19.34■□□□□ 0.69
CCDC88B-208ENST00000492980 SDC2P34741 201 aa19.34■□□□□ 0.69
CCDC88B-208ENST00000492980 HNRNPA0Q13151 305 aaKnown RBP19.34■□□□□ 0.69
CCDC88B-208ENST00000492980 SKP2Q13309 424 aa19.34■□□□□ 0.69
CCDC88B-208ENST00000492980 TBC1D25Q3MII6 688 aa19.34■□□□□ 0.69
CCDC88B-208ENST00000492980 C1orf189Q5VU69 101 aa19.34■□□□□ 0.69
CCDC88B-208ENST00000492980 TMPRSS11AQ6ZMR5 421 aa19.34■□□□□ 0.69
CCDC88B-208ENST00000492980 LRRC17Q8N6Y2 441 aa19.34■□□□□ 0.69
CCDC88B-208ENST00000492980 OR5M3Q8NGP4 307 aa19.34■□□□□ 0.69
CCDC88B-208ENST00000492980 NUDT9Q9BW91 350 aa19.34■□□□□ 0.69
CCDC88B-208ENST00000492980 LRRN3Q9H3W5 708 aa19.34■□□□□ 0.69
CCDC88B-208ENST00000492980 CHRNA9Q9UGM1 479 aa19.34■□□□□ 0.69
CCDC88B-208ENST00000492980 UNC13CQ8NB66 2214 aa19.34■□□□□ 0.69
CCDC88B-208ENST00000492980 LOC110117498-PIK3R3F6TDL0 507 aa19.34■□□□□ 0.69
CCDC88B-208ENST00000492980 SCDO00767 359 aa19.34■□□□□ 0.69
Retrieved 100 of 20,778 RNA–protein pairs in 30.7 ms