RNA–Protein interactions for RNA: ENST00000491791.1

USP4-214, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 3

Gene USP4, Length 821 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-214ENST00000491791 ART5Q96L15 291 aa9.87□□□□□ -0.83
USP4-214ENST00000491791 GPX7Q96SL4 187 aaPredicted RBP9.87□□□□□ -0.83
USP4-214ENST00000491791 TMEM43Q9BTV4 400 aa9.87□□□□□ -0.83
USP4-214ENST00000491791 CCDC32Q9BV29 185 aa9.87□□□□□ -0.83
USP4-214ENST00000491791 EDEM2Q9BV94 578 aa9.87□□□□□ -0.83
USP4-214ENST00000491791 TGIF2Q9GZN2 237 aa9.87□□□□□ -0.83
USP4-214ENST00000491791 MIR1-1HGQ9H1L0 117 aa9.87□□□□□ -0.83
USP4-214ENST00000491791 SP140LQ9H930 580 aa9.87□□□□□ -0.83
USP4-214ENST00000491791 TXNL4BQ9NX01 149 aaKnown RBP9.87□□□□□ -0.83
USP4-214ENST00000491791 SOHLH2Q9NX45 425 aa9.87□□□□□ -0.83
USP4-214ENST00000491791 ERVK13-1Q9NX77 482 aa9.87□□□□□ -0.83
USP4-214ENST00000491791 H2AFY2Q9P0M6 372 aaPredicted RBP9.87□□□□□ -0.83
USP4-214ENST00000491791 IL20RAQ9UHF4 553 aa9.87□□□□□ -0.83
USP4-214ENST00000491791 MRTO4Q9UKD2 239 aaKnown RBP9.87□□□□□ -0.83
USP4-214ENST00000491791 ERVK-19Q9WJR5 959 aa9.87□□□□□ -0.83
USP4-214ENST00000491791 POLHQ9Y253 713 aa9.87□□□□□ -0.83
USP4-214ENST00000491791 GPR52Q9Y2T5 361 aa9.87□□□□□ -0.83
USP4-214ENST00000491791 CACNA1GO43497 2377 aa9.87□□□□□ -0.83
USP4-214ENST00000491791 EML5Q05BV3 1969 aa9.86□□□□□ -0.83
USP4-214ENST00000491791 TDRD6O60522 2096 aaKnown RBP9.86□□□□□ -0.83
USP4-214ENST00000491791 IGLV3-12A0A075B6K2 115 aa9.86□□□□□ -0.83
USP4-214ENST00000491791 C2orf92A0A1B0GVN3 265 aa9.86□□□□□ -0.83
USP4-214ENST00000491791 A0A1W2PQD3 144 aa9.86□□□□□ -0.83
USP4-214ENST00000491791 OR6C76A6NM76 312 aa9.86□□□□□ -0.83
USP4-214ENST00000491791 C17orf105B2RV13 164 aa9.86□□□□□ -0.83
USP4-214ENST00000491791 TMEM150CB9EJG8 249 aa9.86□□□□□ -0.83
USP4-214ENST00000491791 TM4SF5O14894 197 aa9.86□□□□□ -0.83
USP4-214ENST00000491791 DYRK3O43781 588 aa9.86□□□□□ -0.83
USP4-214ENST00000491791 DDAH2O95865 285 aa9.86□□□□□ -0.83
USP4-214ENST00000491791 IFNGP01579 166 aa9.86□□□□□ -0.83
USP4-214ENST00000491791 CD1AP06126 327 aa9.86□□□□□ -0.83
USP4-214ENST00000491791 TSPAN19P0C672 248 aa9.86□□□□□ -0.83
USP4-214ENST00000491791 OCM2P0CE71 109 aa9.86□□□□□ -0.83
USP4-214ENST00000491791 OCMP0CE72 109 aaPredicted RBP9.86□□□□□ -0.83
USP4-214ENST00000491791 PNMTP11086 282 aa9.86□□□□□ -0.83
USP4-214ENST00000491791 APEHP13798 732 aaKnown RBP9.86□□□□□ -0.83
USP4-214ENST00000491791 MAOAP21397 527 aa9.86□□□□□ -0.83
USP4-214ENST00000491791 RPS19P39019 145 aaKnown RBP9.86□□□□□ -0.83
USP4-214ENST00000491791 SOX3P41225 446 aa9.86□□□□□ -0.83
USP4-214ENST00000491791 CSNK1EP49674 416 aaKnown RBP9.86□□□□□ -0.83
USP4-214ENST00000491791 OR1D5P58170 312 aa9.86□□□□□ -0.83
USP4-214ENST00000491791 RPS4XP62701 263 aaKnown RBP9.86□□□□□ -0.83
USP4-214ENST00000491791 POU4F2Q12837 409 aa9.86□□□□□ -0.83
USP4-214ENST00000491791 KRR1Q13601 381 aaKnown RBP9.86□□□□□ -0.83
USP4-214ENST00000491791 ERV3-1Q14264 604 aa9.86□□□□□ -0.83
USP4-214ENST00000491791 GGTLC2Q14390 218 aa9.86□□□□□ -0.83
USP4-214ENST00000491791 ALG10BQ5I7T1 473 aa9.86□□□□□ -0.83
USP4-214ENST00000491791 ARHGAP11AQ6P4F7 1023 aa9.86□□□□□ -0.83
USP4-214ENST00000491791 ZNF322Q6U7Q0 402 aaPredicted RBP9.86□□□□□ -0.83
USP4-214ENST00000491791 HSDL2Q6YN16 418 aa9.86□□□□□ -0.83
USP4-214ENST00000491791 THSD4Q6ZMP0 1018 aa9.86□□□□□ -0.83
USP4-214ENST00000491791 PLEKHG7Q6ZR37 379 aa9.86□□□□□ -0.83
USP4-214ENST00000491791 BTLAQ7Z6A9 289 aa9.86□□□□□ -0.83
USP4-214ENST00000491791 SLC35F3Q8IY50 421 aa9.86□□□□□ -0.83
USP4-214ENST00000491791 FAM181AQ8N9Y4 354 aa9.86□□□□□ -0.83
USP4-214ENST00000491791 ZNF527Q8NB42 609 aa9.86□□□□□ -0.83
USP4-214ENST00000491791 OR4C3Q8NH37 302 aa9.86□□□□□ -0.83
USP4-214ENST00000491791 OR1L3Q8NH93 324 aa9.86□□□□□ -0.83
USP4-214ENST00000491791 OR14A16Q8NHC5 309 aa9.86□□□□□ -0.83
USP4-214ENST00000491791 DOK4Q8TEW6 326 aa9.86□□□□□ -0.83
USP4-214ENST00000491791 ZNF721Q8TF20 911 aa9.86□□□□□ -0.83
USP4-214ENST00000491791 UFD1Q92890 307 aa9.86□□□□□ -0.83
USP4-214ENST00000491791 KISS1RQ969F8 398 aaPredicted RBP9.86□□□□□ -0.83
USP4-214ENST00000491791 ADIPOR1Q96A54 375 aa9.86□□□□□ -0.83
USP4-214ENST00000491791 TRMT61AQ96FX7 289 aaKnown RBP9.86□□□□□ -0.83
USP4-214ENST00000491791 AHCYL2Q96HN2 611 aaKnown RBP9.86□□□□□ -0.83
USP4-214ENST00000491791 DDOQ99489 341 aa9.86□□□□□ -0.83
USP4-214ENST00000491791 TIMP4Q99727 224 aa9.86□□□□□ -0.83
USP4-214ENST00000491791 NUAK2Q9H093 628 aa9.86□□□□□ -0.83
USP4-214ENST00000491791 ENKD1Q9H0I2 346 aa9.86□□□□□ -0.83
USP4-214ENST00000491791 ZNF768Q9H5H4 540 aaKnown RBP9.86□□□□□ -0.83
USP4-214ENST00000491791 RNF167Q9H6Y7 350 aa9.86□□□□□ -0.83
USP4-214ENST00000491791 MCCC2Q9HCC0 563 aa9.86□□□□□ -0.83
USP4-214ENST00000491791 MKKSQ9NPJ1 570 aaPredicted RBP9.86□□□□□ -0.83
USP4-214ENST00000491791 ATP13A2Q9NQ11 1180 aa9.86□□□□□ -0.83
USP4-214ENST00000491791 RXFP3Q9NSD7 469 aa9.86□□□□□ -0.83
USP4-214ENST00000491791 TNFRSF10DQ9UBN6 386 aa9.86□□□□□ -0.83
USP4-214ENST00000491791 SPIN1Q9Y657 262 aaPredicted RBP9.86□□□□□ -0.83
USP4-214ENST00000491791 CFAP47Q6ZTR5 3102 aa9.86□□□□□ -0.83
USP4-214ENST00000491791 TP53BP1Q12888 1972 aaPredicted RBP9.85□□□□□ -0.83
USP4-214ENST00000491791 CCDC182A6NF36 153 aa9.85□□□□□ -0.83
USP4-214ENST00000491791 IMPA2O14732 288 aa9.85□□□□□ -0.83
USP4-214ENST00000491791 KHNYNO15037 678 aaKnown RBP9.85□□□□□ -0.83
USP4-214ENST00000491791 PFDN1O60925 122 aa9.85□□□□□ -0.83
USP4-214ENST00000491791 NDUFB2O95178 105 aa9.85□□□□□ -0.83
USP4-214ENST00000491791 SLC2A10O95528 541 aa9.85□□□□□ -0.83
USP4-214ENST00000491791 CSTAP01040 98 aa9.85□□□□□ -0.83
USP4-214ENST00000491791 HLA-DPB1P04440 258 aa9.85□□□□□ -0.83
USP4-214ENST00000491791 CYC1P08574 325 aa9.85□□□□□ -0.83
USP4-214ENST00000491791 HK1P19367 917 aa9.85□□□□□ -0.83
USP4-214ENST00000491791 CFL1P23528 166 aaKnown RBP9.85□□□□□ -0.83
USP4-214ENST00000491791 CSF2RBP32927 897 aa9.85□□□□□ -0.83
USP4-214ENST00000491791 NOVA1P51513 510 aaKnown RBP9.85□□□□□ -0.83
USP4-214ENST00000491791 ACTC1P68032 377 aa9.85□□□□□ -0.83
USP4-214ENST00000491791 ACTA1P68133 377 aa9.85□□□□□ -0.83
USP4-214ENST00000491791 IL10RAQ13651 578 aa9.85□□□□□ -0.83
USP4-214ENST00000491791 GALEQ14376 348 aa9.85□□□□□ -0.83
USP4-214ENST00000491791 TRAM1Q15629 374 aa9.85□□□□□ -0.83
USP4-214ENST00000491791 CLPPQ16740 277 aaPredicted RBP9.85□□□□□ -0.83
USP4-214ENST00000491791 LIPKQ5VXJ0 399 aa9.85□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 27 ms