RNA–Protein interactions for RNA: ENST00000491659.5

USP39-217, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 3

Gene USP39, Length 648 nt, Biotype processed transcript, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-217ENST00000491659 KLHL4Q9C0H6 718 aa13.47□□□□□ -0.25
USP39-217ENST00000491659 GP6Q9HCN6 339 aa13.47□□□□□ -0.25
USP39-217ENST00000491659 KLHL9Q9P2J3 617 aa13.47□□□□□ -0.25
USP39-217ENST00000491659 HRNRQ86YZ3 2850 aaPredicted RBP13.47□□□□□ -0.25
USP39-217ENST00000491659 IGHV3-15A0A0B4J1V0 119 aa13.46□□□□□ -0.25
USP39-217ENST00000491659 NR5A2O00482 541 aa13.46□□□□□ -0.25
USP39-217ENST00000491659 HRGP04196 525 aa13.46□□□□□ -0.25
USP39-217ENST00000491659 TFPIP10646 304 aa13.46□□□□□ -0.25
USP39-217ENST00000491659 NID1P14543 1247 aa13.46□□□□□ -0.25
USP39-217ENST00000491659 CD1EP15812 388 aa13.46□□□□□ -0.25
USP39-217ENST00000491659 ENPP1P22413 925 aa13.46□□□□□ -0.25
USP39-217ENST00000491659 DNASE1P24855 282 aa13.46□□□□□ -0.25
USP39-217ENST00000491659 HTR3AP46098 478 aa13.46□□□□□ -0.25
USP39-217ENST00000491659 MVDP53602 400 aa13.46□□□□□ -0.25
USP39-217ENST00000491659 IST1P53990 364 aa13.46□□□□□ -0.25
USP39-217ENST00000491659 CSNK2A1P68400 391 aaPredicted RBP13.46□□□□□ -0.25
USP39-217ENST00000491659 FADDQ13158 208 aa13.46□□□□□ -0.25
USP39-217ENST00000491659 LIN52Q52LA3 116 aa13.46□□□□□ -0.25
USP39-217ENST00000491659 SYT14P1Q58G82 188 aa13.46□□□□□ -0.25
USP39-217ENST00000491659 MRPL2Q5T653 305 aaKnown RBP13.46□□□□□ -0.25
USP39-217ENST00000491659 PAMR1Q6UXH9 720 aa13.46□□□□□ -0.25
USP39-217ENST00000491659 ZNF550Q7Z398 422 aa13.46□□□□□ -0.25
USP39-217ENST00000491659 CKAP2Q8WWK9 683 aa13.46□□□□□ -0.25
USP39-217ENST00000491659 GTF2H4Q92759 462 aa13.46□□□□□ -0.25
USP39-217ENST00000491659 WFIKKN1Q96NZ8 548 aa13.46□□□□□ -0.25
USP39-217ENST00000491659 CCDC106Q9BWC9 280 aa13.46□□□□□ -0.25
USP39-217ENST00000491659 LIME1Q9H400 295 aa13.46□□□□□ -0.25
USP39-217ENST00000491659 CTPS2Q9NRF8 586 aa13.46□□□□□ -0.25
USP39-217ENST00000491659 CCDC167Q9P0B6 97 aa13.46□□□□□ -0.25
USP39-217ENST00000491659 CHRNA9Q9UGM1 479 aa13.46□□□□□ -0.25
USP39-217ENST00000491659 DSPPQ9NZW4 1301 aa13.45□□□□□ -0.26
USP39-217ENST00000491659 A0A096LPI6 279 aa13.45□□□□□ -0.26
USP39-217ENST00000491659 SULT2B1O00204 365 aa13.45□□□□□ -0.26
USP39-217ENST00000491659 AP3D1O14617 1153 aa13.45□□□□□ -0.26
USP39-217ENST00000491659 PPP3CBP16298 524 aa13.45□□□□□ -0.26
USP39-217ENST00000491659 CRYGSP22914 178 aa13.45□□□□□ -0.26
USP39-217ENST00000491659 FKBP2P26885 142 aaKnown RBP13.45□□□□□ -0.26
USP39-217ENST00000491659 IDH2P48735 452 aaKnown RBP13.45□□□□□ -0.26
USP39-217ENST00000491659 DIO1P49895 249 aa13.45□□□□□ -0.26
USP39-217ENST00000491659 ATP4BP51164 291 aa13.45□□□□□ -0.26
USP39-217ENST00000491659 PLAURQ03405 335 aa13.45□□□□□ -0.26
USP39-217ENST00000491659 SQLEQ14534 574 aa13.45□□□□□ -0.26
USP39-217ENST00000491659 TESK1Q15569 626 aa13.45□□□□□ -0.26
USP39-217ENST00000491659 ZNF836Q6ZNA1 936 aa13.45□□□□□ -0.26
USP39-217ENST00000491659 TUSC5Q8IXB3 177 aa13.45□□□□□ -0.26
USP39-217ENST00000491659 ZNF440Q8IYI8 595 aa13.45□□□□□ -0.26
USP39-217ENST00000491659 OR52P1PQ8NH57 321 aa13.45□□□□□ -0.26
USP39-217ENST00000491659 SPDL1Q96EA4 605 aa13.45□□□□□ -0.26
USP39-217ENST00000491659 ZHX1-C8orf76Q96EF9 292 aa13.45□□□□□ -0.26
USP39-217ENST00000491659 ZC3HAV1LQ96H79 300 aaKnown RBP13.45□□□□□ -0.26
USP39-217ENST00000491659 PAIP1Q9H074 479 aaKnown RBP13.45□□□□□ -0.26
USP39-217ENST00000491659 C6orf203Q9P0P8 240 aaPredicted RBP13.45□□□□□ -0.26
USP39-217ENST00000491659 PLEKHA6Q9Y2H5 1048 aa13.45□□□□□ -0.26
USP39-217ENST00000491659 PCDHB14Q9Y5E9 798 aa13.45□□□□□ -0.26
USP39-217ENST00000491659 CFAP73A6NFT4 308 aa13.44□□□□□ -0.26
USP39-217ENST00000491659 CLIC1O00299 241 aa13.44□□□□□ -0.26
USP39-217ENST00000491659 SMAD9O15198 467 aaKnown RBP13.44□□□□□ -0.26
USP39-217ENST00000491659 RAF1P04049 648 aa13.44□□□□□ -0.26
USP39-217ENST00000491659 FESP07332 822 aa13.44□□□□□ -0.26
USP39-217ENST00000491659 YES1P07947 543 aa13.44□□□□□ -0.26
USP39-217ENST00000491659 TFPTP0C1Z6 253 aa13.44□□□□□ -0.26
USP39-217ENST00000491659 POLR2HP52434 150 aaKnown RBP13.44□□□□□ -0.26
USP39-217ENST00000491659 RASGEF1BQ0VAM2 473 aa13.44□□□□□ -0.26
USP39-217ENST00000491659 RGNQ15493 299 aa13.44□□□□□ -0.26
USP39-217ENST00000491659 MAPK11Q15759 364 aa13.44□□□□□ -0.26
USP39-217ENST00000491659 BLOC1S3Q6QNY0 202 aa13.44□□□□□ -0.26
USP39-217ENST00000491659 TFAP2EQ6VUC0 442 aa13.44□□□□□ -0.26
USP39-217ENST00000491659 SPNS3Q6ZMD2 512 aa13.44□□□□□ -0.26
USP39-217ENST00000491659 TMPPEQ6ZT21 453 aa13.44□□□□□ -0.26
USP39-217ENST00000491659 SLC38A5Q8WUX1 472 aa13.44□□□□□ -0.26
USP39-217ENST00000491659 STON2Q8WXE9 905 aa13.44□□□□□ -0.26
USP39-217ENST00000491659 TMEM19Q96HH6 336 aa13.44□□□□□ -0.26
USP39-217ENST00000491659 PSD2Q9BQI7 771 aa13.44□□□□□ -0.26
USP39-217ENST00000491659 ARMC7Q9H6L4 198 aa13.44□□□□□ -0.26
USP39-217ENST00000491659 BCO1Q9HAY6 547 aa13.44□□□□□ -0.26
USP39-217ENST00000491659 CCM2LQ9NUG4 571 aaPredicted RBP13.44□□□□□ -0.26
USP39-217ENST00000491659 TMEM45AQ9NWC5 275 aa13.44□□□□□ -0.26
USP39-217ENST00000491659 ZNF443Q9Y2A4 671 aaPredicted RBP13.44□□□□□ -0.26
USP39-217ENST00000491659 SPG11Q96JI7 2443 aa13.43□□□□□ -0.26
USP39-217ENST00000491659 TMED7-TICAM2A0A0A6YYA0 188 aa13.43□□□□□ -0.26
USP39-217ENST00000491659 A0A0G2JPF8 293 aa13.43□□□□□ -0.26
USP39-217ENST00000491659 CDHR4A6H8M9 788 aa13.43□□□□□ -0.26
USP39-217ENST00000491659 HNRNPCL2B2RXH8 293 aa13.43□□□□□ -0.26
USP39-217ENST00000491659 HNRNPCL3B7ZW38 293 aa13.43□□□□□ -0.26
USP39-217ENST00000491659 C5orf58C9J3I9 102 aa13.43□□□□□ -0.26
USP39-217ENST00000491659 FAAHO00519 579 aa13.43□□□□□ -0.26
USP39-217ENST00000491659 CYTIPO60759 359 aa13.43□□□□□ -0.26
USP39-217ENST00000491659 HNRNPCL1O60812 293 aaKnown RBP13.43□□□□□ -0.26
USP39-217ENST00000491659 ADAM11O75078 769 aa13.43□□□□□ -0.26
USP39-217ENST00000491659 SASH3O75995 380 aa13.43□□□□□ -0.26
USP39-217ENST00000491659 THBS1P07996 1170 aa13.43□□□□□ -0.26
USP39-217ENST00000491659 HNRNPCL4P0DMR1 293 aa13.43□□□□□ -0.26
USP39-217ENST00000491659 PPIBP23284 216 aaKnown RBP13.43□□□□□ -0.26
USP39-217ENST00000491659 CLK1P49759 484 aaKnown RBP13.43□□□□□ -0.26
USP39-217ENST00000491659 EPS8Q12929 822 aa13.43□□□□□ -0.26
USP39-217ENST00000491659 KEAP1Q14145 624 aa13.43□□□□□ -0.26
USP39-217ENST00000491659 LARS2Q15031 903 aaKnown RBP13.43□□□□□ -0.26
USP39-217ENST00000491659 ZSWIM7Q19AV6 140 aa13.43□□□□□ -0.26
USP39-217ENST00000491659 AGKQ53H12 422 aa13.43□□□□□ -0.26
USP39-217ENST00000491659 RPS26P11Q5JNZ5 115 aaPredicted RBP13.43□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 28.3 ms