RNA–Protein interactions for RNA: ENST00000487938.5

VIM-206, Transcript of vimentin, humanhuman

TSL 5

Gene VIM, Length 2,272 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-206ENST00000487938 CCDC86Q9H6F5 360 aaKnown RBP16.57■□□□□ 0.24
VIM-206ENST00000487938 SLC28A3Q9HAS3 691 aa16.57■□□□□ 0.24
VIM-206ENST00000487938 A0A0B4J2E0 115 aa16.56■□□□□ 0.24
VIM-206ENST00000487938 A0A0G2JK05 382 aa16.56■□□□□ 0.24
VIM-206ENST00000487938 A0A1B0GX12 115 aa16.56■□□□□ 0.24
VIM-206ENST00000487938 AKR7A2O43488 359 aa16.56■□□□□ 0.24
VIM-206ENST00000487938 FMO6PO60774 539 aa16.56■□□□□ 0.24
VIM-206ENST00000487938 APBB3O95704 486 aa16.56■□□□□ 0.24
VIM-206ENST00000487938 ZNF3P17036 446 aa16.56■□□□□ 0.24
VIM-206ENST00000487938 EVI2BP34910 448 aa16.56■□□□□ 0.24
VIM-206ENST00000487938 MAP3K8P41279 467 aa16.56■□□□□ 0.24
VIM-206ENST00000487938 SNRPD2P62316 118 aaKnown RBP16.56■□□□□ 0.24
VIM-206ENST00000487938 TP53I3Q53FA7 332 aa16.56■□□□□ 0.24
VIM-206ENST00000487938 RNASE12Q5GAN4 147 aaKnown RBP16.56■□□□□ 0.24
VIM-206ENST00000487938 KRT74Q7RTS7 529 aa16.56■□□□□ 0.24
VIM-206ENST00000487938 GHDCQ8N2G8 530 aa16.56■□□□□ 0.24
VIM-206ENST00000487938 C7orf57Q8NEG2 295 aa16.56■□□□□ 0.24
VIM-206ENST00000487938 ZMYND19Q96E35 227 aaPredicted RBP16.56■□□□□ 0.24
VIM-206ENST00000487938 PGLYRP3Q96LB9 341 aa16.56■□□□□ 0.24
VIM-206ENST00000487938 PBX4Q9BYU1 374 aa16.56■□□□□ 0.24
VIM-206ENST00000487938 ABCG5Q9H222 651 aa16.56■□□□□ 0.24
VIM-206ENST00000487938 INPP5EQ9NRR6 644 aa16.56■□□□□ 0.24
VIM-206ENST00000487938 ACOXLQ9NUZ1 547 aa16.56■□□□□ 0.24
VIM-206ENST00000487938 HRASLS2Q9NWW9 162 aa16.56■□□□□ 0.24
VIM-206ENST00000487938 ING3Q9NXR8 418 aa16.56■□□□□ 0.24
VIM-206ENST00000487938 A0A0B4J203 849 aa16.56■□□□□ 0.24
VIM-206ENST00000487938 ERP29P30040 261 aaKnown RBP16.56■□□□□ 0.24
VIM-206ENST00000487938 GZMKP49863 264 aa16.56■□□□□ 0.24
VIM-206ENST00000487938 ZNF542PQ5EBM4 170 aa16.56■□□□□ 0.24
VIM-206ENST00000487938 ZNF613Q6PF04 617 aa16.56■□□□□ 0.24
VIM-206ENST00000487938 GPALPP1Q8IXQ4 340 aa16.56■□□□□ 0.24
VIM-206ENST00000487938 OR52E2Q8NGJ4 325 aa16.56■□□□□ 0.24
VIM-206ENST00000487938 OR5H6Q8NGV6 325 aa16.56■□□□□ 0.24
VIM-206ENST00000487938 BAHD1Q8TBE0 780 aaPredicted RBP16.56■□□□□ 0.24
VIM-206ENST00000487938 ERMAPQ96PL5 475 aaPredicted RBP16.56■□□□□ 0.24
VIM-206ENST00000487938 SLX1AQ9BQ83 275 aa16.56■□□□□ 0.24
VIM-206ENST00000487938 A0A0C4DFX4 3053 aa16.55■□□□□ 0.24
VIM-206ENST00000487938 CHP2O43745 196 aa16.55■□□□□ 0.24
VIM-206ENST00000487938 GALR3O60755 368 aaPredicted RBP16.55■□□□□ 0.24
VIM-206ENST00000487938 FZD7O75084 574 aa16.55■□□□□ 0.24
VIM-206ENST00000487938 RDH16O75452 317 aa16.55■□□□□ 0.24
VIM-206ENST00000487938 CBX7O95931 251 aa16.55■□□□□ 0.24
VIM-206ENST00000487938 IGKV1D-16P01601 117 aa16.55■□□□□ 0.24
VIM-206ENST00000487938 NPR2P20594 1047 aa16.55■□□□□ 0.24
VIM-206ENST00000487938 SLC6A1P30531 599 aa16.55■□□□□ 0.24
VIM-206ENST00000487938 ATP12AP54707 1039 aa16.55■□□□□ 0.24
VIM-206ENST00000487938 CRYZQ08257 329 aaKnown RBP16.55■□□□□ 0.24
VIM-206ENST00000487938 DEFB110Q30KQ9 67 aa16.55■□□□□ 0.24
VIM-206ENST00000487938 ZCCHC12Q6PEW1 402 aa16.55■□□□□ 0.24
VIM-206ENST00000487938 RTL4Q6ZR62 310 aa16.55■□□□□ 0.24
VIM-206ENST00000487938 CADM2Q8N3J6 435 aa16.55■□□□□ 0.24
VIM-206ENST00000487938 CSNK1A1LQ8N752 337 aa16.55■□□□□ 0.24
VIM-206ENST00000487938 SDR9C7Q8NEX9 313 aa16.55■□□□□ 0.24
VIM-206ENST00000487938 OR4K13Q8NH42 304 aa16.55■□□□□ 0.24
VIM-206ENST00000487938 ZFAND1Q8TCF1 268 aa16.55■□□□□ 0.24
VIM-206ENST00000487938 CDCA3Q99618 268 aaPredicted RBP16.55■□□□□ 0.24
VIM-206ENST00000487938 LMAN2LQ9H0V9 348 aa16.55■□□□□ 0.24
VIM-206ENST00000487938 TCEAL2Q9H3H9 227 aaPredicted RBP16.55■□□□□ 0.24
VIM-206ENST00000487938 MCCC2Q9HCC0 563 aa16.55■□□□□ 0.24
VIM-206ENST00000487938 OR10H2O60403 315 aa16.54■□□□□ 0.24
VIM-206ENST00000487938 PEPDP12955 493 aa16.54■□□□□ 0.24
VIM-206ENST00000487938 AHCYP23526 432 aa16.54■□□□□ 0.24
VIM-206ENST00000487938 ACAA2P42765 397 aaKnown RBP16.54■□□□□ 0.24
VIM-206ENST00000487938 GALK2Q01415 458 aa16.54■□□□□ 0.24
VIM-206ENST00000487938 FHL1Q13642 323 aa16.54■□□□□ 0.24
VIM-206ENST00000487938 ALG10BQ5I7T1 473 aa16.54■□□□□ 0.24
VIM-206ENST00000487938 TIGD3Q6B0B8 471 aa16.54■□□□□ 0.24
VIM-206ENST00000487938 THOC7Q6I9Y2 204 aaKnown RBP16.54■□□□□ 0.24
VIM-206ENST00000487938 TRIM63Q969Q1 353 aa16.54■□□□□ 0.24
VIM-206ENST00000487938 CTHRC1Q96CG8 243 aa16.54■□□□□ 0.24
VIM-206ENST00000487938 MRGPRX1Q96LB2 322 aa16.54■□□□□ 0.24
VIM-206ENST00000487938 TRAV6A0A075B6T7 132 aa16.54■□□□□ 0.24
VIM-206ENST00000487938 EPOPA6NHQ4 379 aa16.54■□□□□ 0.24
VIM-206ENST00000487938 C2orf74A8MZ97 194 aa16.54■□□□□ 0.24
VIM-206ENST00000487938 LRRN3E7EW58 273 aa16.54■□□□□ 0.24
VIM-206ENST00000487938 HRKO00198 91 aa16.54■□□□□ 0.24
VIM-206ENST00000487938 C1QBP02746 253 aa16.54■□□□□ 0.24
VIM-206ENST00000487938 HNRNPA2B1P22626 353 aaKnown RBP16.54■□□□□ 0.24
VIM-206ENST00000487938 RBMS1P29558 406 aaKnown RBP16.54■□□□□ 0.24
VIM-206ENST00000487938 PSG6Q00889 435 aa16.54■□□□□ 0.24
VIM-206ENST00000487938 DMKNQ6E0U4 476 aaPredicted RBP16.54■□□□□ 0.24
VIM-206ENST00000487938 PXKQ7Z7A4 578 aa16.54■□□□□ 0.24
VIM-206ENST00000487938 TPRA1Q86W33 373 aa16.54■□□□□ 0.24
VIM-206ENST00000487938 LRRC17Q8N6Y2 441 aa16.54■□□□□ 0.24
VIM-206ENST00000487938 BMPERQ8N8U9 685 aa16.54■□□□□ 0.24
VIM-206ENST00000487938 FAM98AQ8NCA5 519 aaKnown RBP16.54■□□□□ 0.24
VIM-206ENST00000487938 OR9A4Q8NGU2 314 aa16.54■□□□□ 0.24
VIM-206ENST00000487938 CREB3L1Q96BA8 519 aa16.54■□□□□ 0.24
VIM-206ENST00000487938 KCTD12Q96CX2 325 aaKnown RBP16.54■□□□□ 0.24
VIM-206ENST00000487938 LRRN3Q9H3W5 708 aa16.54■□□□□ 0.24
VIM-206ENST00000487938 PRDM9Q9NQV7 894 aa16.54■□□□□ 0.24
VIM-206ENST00000487938 CPNE7Q9UBL6 633 aa16.54■□□□□ 0.24
VIM-206ENST00000487938 MRPS7Q9Y2R9 242 aaKnown RBP16.54■□□□□ 0.24
VIM-206ENST00000487938 A0A0A6YYJ9 748 aa16.53■□□□□ 0.24
VIM-206ENST00000487938 TRIM3O75382 744 aaPredicted RBP16.53■□□□□ 0.24
VIM-206ENST00000487938 SC5DO75845 299 aa16.53■□□□□ 0.24
VIM-206ENST00000487938 SOX30O94993 753 aa16.53■□□□□ 0.24
VIM-206ENST00000487938 NKX2-2O95096 273 aa16.53■□□□□ 0.24
VIM-206ENST00000487938 CELA2BP08218 269 aaPredicted RBP16.53■□□□□ 0.24
VIM-206ENST00000487938 HIST1H1CP16403 213 aaKnown RBP16.53■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 47 ms