RNA–Protein interactions for RNA: ENST00000486227.5

HDAC6-228, Transcript of histone deacetylase 6, humanhuman

TSL 2

Gene HDAC6, Length 4,718 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-228ENST00000486227 A0A1W2PPL8 197 aa10.27□□□□□ -0.76
HDAC6-228ENST00000486227 RGS9O75916 674 aaPredicted RBP10.27□□□□□ -0.76
HDAC6-228ENST00000486227 CHMP24386 653 aa10.27□□□□□ -0.76
HDAC6-228ENST00000486227 MAN2A2P49641 1150 aa10.27□□□□□ -0.76
HDAC6-228ENST00000486227 CLRN1P58418 232 aa10.27□□□□□ -0.76
HDAC6-228ENST00000486227 KIAA1024LP59773 190 aa10.27□□□□□ -0.76
HDAC6-228ENST00000486227 RRAS2P62070 204 aaPredicted RBP10.27□□□□□ -0.76
HDAC6-228ENST00000486227 SLC48A1Q6P1K1 146 aa10.27□□□□□ -0.76
HDAC6-228ENST00000486227 KCTD18Q6PI47 426 aaPredicted RBP10.27□□□□□ -0.76
HDAC6-228ENST00000486227 ARSKQ6UWY0 536 aa10.27□□□□□ -0.76
HDAC6-228ENST00000486227 TMPPEQ6ZT21 453 aa10.27□□□□□ -0.76
HDAC6-228ENST00000486227 GALNTL5Q7Z4T8 443 aa10.27□□□□□ -0.76
HDAC6-228ENST00000486227 INO80EQ8NBZ0 244 aaPredicted RBP10.27□□□□□ -0.76
HDAC6-228ENST00000486227 FKBP10Q96AY3 582 aa10.27□□□□□ -0.76
HDAC6-228ENST00000486227 BTBD2Q9BX70 525 aa10.27□□□□□ -0.76
HDAC6-228ENST00000486227 SAV1Q9H4B6 383 aaPredicted RBP10.27□□□□□ -0.76
HDAC6-228ENST00000486227 YBX2Q9Y2T7 364 aaKnown RBP10.27□□□□□ -0.76
HDAC6-228ENST00000486227 LOC102723532A0A0G2JNH3 316 aa10.27□□□□□ -0.77
HDAC6-228ENST00000486227 METTL21EPA6NDL7 271 aa10.27□□□□□ -0.77
HDAC6-228ENST00000486227 FAM183AA6NL82 134 aa10.27□□□□□ -0.77
HDAC6-228ENST00000486227 EIF5AP63241 154 aaKnown RBP10.27□□□□□ -0.77
HDAC6-228ENST00000486227 AGBL4Q5VU57 503 aa10.27□□□□□ -0.77
HDAC6-228ENST00000486227 KIAA1211LQ6NV74 962 aa10.27□□□□□ -0.77
HDAC6-228ENST00000486227 CLDN22Q8N7P3 220 aa10.27□□□□□ -0.77
HDAC6-228ENST00000486227 FRMD1Q8N878 549 aa10.27□□□□□ -0.77
HDAC6-228ENST00000486227 PNLDC1Q8NA58 520 aaKnown RBP10.27□□□□□ -0.77
HDAC6-228ENST00000486227 IL17RCQ8NAC3 791 aa10.27□□□□□ -0.77
HDAC6-228ENST00000486227 S100A16Q96FQ6 103 aaKnown RBP10.27□□□□□ -0.77
HDAC6-228ENST00000486227 CNN2Q99439 309 aaKnown RBP10.27□□□□□ -0.77
HDAC6-228ENST00000486227 C11orf54Q9H0W9 315 aaPredicted RBP10.27□□□□□ -0.77
HDAC6-228ENST00000486227 IFT46Q9NQC8 304 aa10.27□□□□□ -0.77
HDAC6-228ENST00000486227 CUTCQ9NTM9 273 aa10.27□□□□□ -0.77
HDAC6-228ENST00000486227 ACAD8Q9UKU7 415 aa10.27□□□□□ -0.77
HDAC6-228ENST00000486227 ATXN7L1Q9ULK2 861 aaPredicted RBP10.27□□□□□ -0.77
HDAC6-228ENST00000486227 IER3IP1Q9Y5U9 82 aa10.27□□□□□ -0.77
HDAC6-228ENST00000486227 FER1L6Q2WGJ9 1857 aa10.27□□□□□ -0.77
HDAC6-228ENST00000486227 TNS1Q9HBL0 1735 aaKnown RBP10.27□□□□□ -0.77
HDAC6-228ENST00000486227 PRODHO43272 600 aa10.27□□□□□ -0.77
HDAC6-228ENST00000486227 TMPRSS11DO60235 418 aa10.27□□□□□ -0.77
HDAC6-228ENST00000486227 CSN2P05814 226 aa10.27□□□□□ -0.77
HDAC6-228ENST00000486227 ZNF28P17035 718 aa10.27□□□□□ -0.77
HDAC6-228ENST00000486227 MAPK3P27361 379 aaPredicted RBP10.27□□□□□ -0.77
HDAC6-228ENST00000486227 CHAF1BQ13112 559 aa10.27□□□□□ -0.77
HDAC6-228ENST00000486227 ZNF385BQ569K4 471 aa10.27□□□□□ -0.77
HDAC6-228ENST00000486227 MRPL2Q5T653 305 aaKnown RBP10.27□□□□□ -0.77
HDAC6-228ENST00000486227 LRRN1Q6UXK5 716 aa10.27□□□□□ -0.77
HDAC6-228ENST00000486227 LAS2Q8IYD9 372 aa10.27□□□□□ -0.77
HDAC6-228ENST00000486227 ZMYND19Q96E35 227 aaPredicted RBP10.27□□□□□ -0.77
HDAC6-228ENST00000486227 RXFP3Q9NSD7 469 aa10.27□□□□□ -0.77
HDAC6-228ENST00000486227 RLIMQ9NVW2 624 aa10.27□□□□□ -0.77
HDAC6-228ENST00000486227 LCMT2O60294 686 aaKnown RBP10.26□□□□□ -0.77
HDAC6-228ENST00000486227 CREBL2O60519 120 aaPredicted RBP10.26□□□□□ -0.77
HDAC6-228ENST00000486227 PLATP00750 562 aa10.26□□□□□ -0.77
HDAC6-228ENST00000486227 RAB38P57729 211 aa10.26□□□□□ -0.77
HDAC6-228ENST00000486227 ARFRP1Q13795 201 aa10.26□□□□□ -0.77
HDAC6-228ENST00000486227 CARD17Q5XLA6 110 aa10.26□□□□□ -0.77
HDAC6-228ENST00000486227 RAB12Q6IQ22 244 aa10.26□□□□□ -0.77
HDAC6-228ENST00000486227 MAMDC2Q7Z304 686 aaPredicted RBP10.26□□□□□ -0.77
HDAC6-228ENST00000486227 SLC16A11Q8NCK7 471 aa10.26□□□□□ -0.77
HDAC6-228ENST00000486227 OR4C15Q8NGM1 316 aa10.26□□□□□ -0.77
HDAC6-228ENST00000486227 OR51Q1Q8NH59 317 aa10.26□□□□□ -0.77
HDAC6-228ENST00000486227 MRGPRX3Q96LB0 322 aa10.26□□□□□ -0.77
HDAC6-228ENST00000486227 OR52D1Q9H346 318 aa10.26□□□□□ -0.77
HDAC6-228ENST00000486227 KCNN3Q9UGI6 736 aa10.26□□□□□ -0.77
HDAC6-228ENST00000486227 CACNG2Q9Y698 323 aa10.26□□□□□ -0.77
HDAC6-228ENST00000486227 DISC1C4P0D8 188 aa10.26□□□□□ -0.77
HDAC6-228ENST00000486227 ZNF208O43345 1280 aa10.26□□□□□ -0.77
HDAC6-228ENST00000486227 EPHA5P54756 1037 aa10.26□□□□□ -0.77
HDAC6-228ENST00000486227 OR1Q1Q15612 314 aa10.26□□□□□ -0.77
HDAC6-228ENST00000486227 C1orf94Q6P1W5 598 aa10.26□□□□□ -0.77
HDAC6-228ENST00000486227 PAQR7Q86WK9 346 aa10.26□□□□□ -0.77
HDAC6-228ENST00000486227 SYT14Q8NB59 555 aa10.26□□□□□ -0.77
HDAC6-228ENST00000486227 MS4A6EQ96DS6 147 aa10.26□□□□□ -0.77
HDAC6-228ENST00000486227 TSNAXQ99598 290 aaKnown RBP10.26□□□□□ -0.77
HDAC6-228ENST00000486227 LTB4R2Q9NPC1 389 aa10.26□□□□□ -0.77
HDAC6-228ENST00000486227 PCDHB16Q9NRJ7 776 aa10.26□□□□□ -0.77
HDAC6-228ENST00000486227 FGF21Q9NSA1 209 aa10.26□□□□□ -0.77
HDAC6-228ENST00000486227 NDUFAF4Q9P032 175 aa10.26□□□□□ -0.77
HDAC6-228ENST00000486227 TMEM14AQ9Y6G1 99 aa10.26□□□□□ -0.77
HDAC6-228ENST00000486227 ZNFX1Q9P2E3 1918 aaKnown RBP10.26□□□□□ -0.77
HDAC6-228ENST00000486227 GJE1A6NN92 205 aa10.26□□□□□ -0.77
HDAC6-228ENST00000486227 SLC43A1O75387 559 aa10.26□□□□□ -0.77
HDAC6-228ENST00000486227 SCG5P05408 212 aa10.26□□□□□ -0.77
HDAC6-228ENST00000486227 CD1EP15812 388 aa10.26□□□□□ -0.77
HDAC6-228ENST00000486227 S1PR1P21453 382 aa10.26□□□□□ -0.77
HDAC6-228ENST00000486227 CBX5P45973 191 aa10.26□□□□□ -0.77
HDAC6-228ENST00000486227 PITPNBP48739 271 aa10.26□□□□□ -0.77
HDAC6-228ENST00000486227 HSD11B2P80365 405 aa10.26□□□□□ -0.77
HDAC6-228ENST00000486227 CD300CQ08708 224 aa10.26□□□□□ -0.77
HDAC6-228ENST00000486227 POU4F2Q12837 409 aa10.26□□□□□ -0.77
HDAC6-228ENST00000486227 RIN1Q13671 783 aa10.26□□□□□ -0.77
HDAC6-228ENST00000486227 SMCO1Q147U7 214 aa10.26□□□□□ -0.77
HDAC6-228ENST00000486227 LRFN4Q6PJG9 635 aa10.26□□□□□ -0.77
HDAC6-228ENST00000486227 OR2T4Q8NH00 348 aa10.26□□□□□ -0.77
HDAC6-228ENST00000486227 ZFAND1Q8TCF1 268 aa10.26□□□□□ -0.77
HDAC6-228ENST00000486227 SLC35B4Q969S0 331 aa10.26□□□□□ -0.77
HDAC6-228ENST00000486227 ELP4Q96EB1 424 aa10.26□□□□□ -0.77
HDAC6-228ENST00000486227 SFXN2Q96NB2 322 aa10.26□□□□□ -0.77
HDAC6-228ENST00000486227 PRR14Q9BWN1 585 aa10.26□□□□□ -0.77
HDAC6-228ENST00000486227 TMEM38AQ9H6F2 299 aa10.26□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 35.2 ms