RNA–Protein interactions for RNA: ENST00000484528.1

USP40-215, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2

Gene USP40, Length 933 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-215ENST00000484528 CASP8Q14790 479 aa19.11■□□□□ 0.65
USP40-215ENST00000484528 STK11Q15831 433 aa19.11■□□□□ 0.65
USP40-215ENST00000484528 FAM174BQ3ZCQ3 159 aa19.11■□□□□ 0.65
USP40-215ENST00000484528 NCMAPQ5T1S8 102 aa19.11■□□□□ 0.65
USP40-215ENST00000484528 FRRS1Q6ZNA5 592 aa19.11■□□□□ 0.65
USP40-215ENST00000484528 BHLHA15Q7RTS1 189 aaPredicted RBP19.11■□□□□ 0.65
USP40-215ENST00000484528 TMEM234Q8WY98 164 aa19.11■□□□□ 0.65
USP40-215ENST00000484528 ARL8AQ96BM9 186 aa19.11■□□□□ 0.65
USP40-215ENST00000484528 TESCQ96BS2 214 aa19.11■□□□□ 0.65
USP40-215ENST00000484528 ZG16BQ96DA0 208 aa19.11■□□□□ 0.65
USP40-215ENST00000484528 TEX37Q96LM6 180 aa19.11■□□□□ 0.65
USP40-215ENST00000484528 SLC35A5Q9BS91 424 aa19.11■□□□□ 0.65
USP40-215ENST00000484528 CXorf56Q9H5V9 222 aa19.11■□□□□ 0.65
USP40-215ENST00000484528 SERINC1Q9NRX5 453 aa19.11■□□□□ 0.65
USP40-215ENST00000484528 ACER3Q9NUN7 267 aa19.11■□□□□ 0.65
USP40-215ENST00000484528 MARCOQ9UEW3 520 aaPredicted RBP19.11■□□□□ 0.65
USP40-215ENST00000484528 SONP18583 2426 aaKnown RBP19.1■□□□□ 0.65
USP40-215ENST00000484528 PRAMEF27A3QJZ7 478 aa19.1■□□□□ 0.65
USP40-215ENST00000484528 CLDN24A6NM45 220 aa19.1■□□□□ 0.65
USP40-215ENST00000484528 FAM171A2A8MVW0 826 aa19.1■□□□□ 0.65
USP40-215ENST00000484528 E9PBE3 544 aa19.1■□□□□ 0.65
USP40-215ENST00000484528 SULT2B1O00204 365 aa19.1■□□□□ 0.65
USP40-215ENST00000484528 AGR2O95994 175 aa19.1■□□□□ 0.65
USP40-215ENST00000484528 CD3EP07766 207 aa19.1■□□□□ 0.65
USP40-215ENST00000484528 S100A3P33764 101 aa19.1■□□□□ 0.65
USP40-215ENST00000484528 ATP5J2P56134 94 aa19.1■□□□□ 0.65
USP40-215ENST00000484528 BST1Q10588 318 aa19.1■□□□□ 0.65
USP40-215ENST00000484528 STX3Q13277 289 aa19.1■□□□□ 0.65
USP40-215ENST00000484528 ITGADQ13349 1161 aa19.1■□□□□ 0.65
USP40-215ENST00000484528 P2RY6Q15077 328 aa19.1■□□□□ 0.65
USP40-215ENST00000484528 GPAT3Q53EU6 434 aa19.1■□□□□ 0.65
USP40-215ENST00000484528 SYT14P1Q58G82 188 aa19.1■□□□□ 0.65
USP40-215ENST00000484528 SEZ6L2Q6UXD5 910 aa19.1■□□□□ 0.65
USP40-215ENST00000484528 Q6ZT83 130 aa19.1■□□□□ 0.65
USP40-215ENST00000484528 FAM71CQ8NEG0 241 aa19.1■□□□□ 0.65
USP40-215ENST00000484528 VPS37AQ8NEZ2 397 aa19.1■□□□□ 0.65
USP40-215ENST00000484528 LILRB1Q8NHL6 650 aaPredicted RBP19.1■□□□□ 0.65
USP40-215ENST00000484528 ZNF563Q8TA94 476 aa19.1■□□□□ 0.65
USP40-215ENST00000484528 NEURL3Q96EH8 262 aa19.1■□□□□ 0.65
USP40-215ENST00000484528 POTEKPQ9BYX7 375 aa19.1■□□□□ 0.65
USP40-215ENST00000484528 CTPS2Q9NRF8 586 aa19.1■□□□□ 0.65
USP40-215ENST00000484528 ZNF701Q9NV72 531 aaPredicted RBP19.1■□□□□ 0.65
USP40-215ENST00000484528 ALDOCP09972 364 aaKnown RBP19.09■□□□□ 0.65
USP40-215ENST00000484528 CLNS1AP54105 237 aaKnown RBP19.09■□□□□ 0.65
USP40-215ENST00000484528 UFM1P61960 85 aa19.09■□□□□ 0.65
USP40-215ENST00000484528 HPCAP84074 193 aa19.09■□□□□ 0.65
USP40-215ENST00000484528 PLAURQ03405 335 aa19.09■□□□□ 0.65
USP40-215ENST00000484528 CHRNEQ04844 493 aa19.09■□□□□ 0.65
USP40-215ENST00000484528 TMPPEQ6ZT21 453 aa19.09■□□□□ 0.65
USP40-215ENST00000484528 ANKRD42Q8N9B4 389 aa19.09■□□□□ 0.65
USP40-215ENST00000484528 KBTBD8Q8NFY9 601 aa19.09■□□□□ 0.65
USP40-215ENST00000484528 HSD17B8Q92506 261 aa19.09■□□□□ 0.65
USP40-215ENST00000484528 ZNF75CPQ92670 426 aaPredicted RBP19.09■□□□□ 0.65
USP40-215ENST00000484528 OR11A1Q9GZK7 315 aa19.09■□□□□ 0.65
USP40-215ENST00000484528 ESRP2Q9H6T0 727 aaKnown RBP19.09■□□□□ 0.65
USP40-215ENST00000484528 MEAF6Q9HAF1 191 aa19.09■□□□□ 0.65
USP40-215ENST00000484528 NGBQ9NPG2 151 aa19.09■□□□□ 0.65
USP40-215ENST00000484528 HAO1Q9UJM8 370 aa19.09■□□□□ 0.65
USP40-215ENST00000484528 SLC35A3Q9Y2D2 325 aa19.09■□□□□ 0.65
USP40-215ENST00000484528 HMGN4O00479 90 aa19.08■□□□□ 0.64
USP40-215ENST00000484528 IGHV3-9P01782 118 aa19.08■□□□□ 0.64
USP40-215ENST00000484528 CCNA2P20248 432 aa19.08■□□□□ 0.64
USP40-215ENST00000484528 PCSK6P29122 969 aa19.08■□□□□ 0.64
USP40-215ENST00000484528 BSPH1Q075Z2 132 aa19.08■□□□□ 0.64
USP40-215ENST00000484528 DPY19L1Q2PZI1 675 aa19.08■□□□□ 0.64
USP40-215ENST00000484528 ABLIM2Q6H8Q1 611 aa19.08■□□□□ 0.64
USP40-215ENST00000484528 ADAM5Q6NVV9 412 aa19.08■□□□□ 0.64
USP40-215ENST00000484528 GALNT5Q7Z7M9 940 aa19.08■□□□□ 0.64
USP40-215ENST00000484528 RNF130Q86XS8 419 aa19.08■□□□□ 0.64
USP40-215ENST00000484528 ZNF100Q8IYN0 542 aa19.08■□□□□ 0.64
USP40-215ENST00000484528 ANKFN1Q8N957 763 aa19.08■□□□□ 0.64
USP40-215ENST00000484528 SLC25A43Q8WUT9 341 aaPredicted RBP19.08■□□□□ 0.64
USP40-215ENST00000484528 FBXW5Q969U6 566 aa19.08■□□□□ 0.64
USP40-215ENST00000484528 ARL5BQ96KC2 179 aa19.08■□□□□ 0.64
USP40-215ENST00000484528 INPP5KQ9BT40 448 aa19.08■□□□□ 0.64
USP40-215ENST00000484528 CCDC106Q9BWC9 280 aa19.08■□□□□ 0.64
USP40-215ENST00000484528 SAP130Q9H0E3 1048 aa19.08■□□□□ 0.64
USP40-215ENST00000484528 POLE3Q9NRF9 147 aa19.08■□□□□ 0.64
USP40-215ENST00000484528 GOLGA8QA0A0J9YX86 632 aa19.07■□□□□ 0.64
USP40-215ENST00000484528 GOLGA8OA6NCC3 632 aa19.07■□□□□ 0.64
USP40-215ENST00000484528 ZNF724A8MTY0 619 aa19.07■□□□□ 0.64
USP40-215ENST00000484528 GOLGA8NF8WBI6 632 aa19.07■□□□□ 0.64
USP40-215ENST00000484528 SDHDO14521 159 aa19.07■□□□□ 0.64
USP40-215ENST00000484528 AP3D1O14617 1153 aa19.07■□□□□ 0.64
USP40-215ENST00000484528 ADAM11O75078 769 aa19.07■□□□□ 0.64
USP40-215ENST00000484528 GSNP06396 782 aa19.07■□□□□ 0.64
USP40-215ENST00000484528 SOD3P08294 240 aa19.07■□□□□ 0.64
USP40-215ENST00000484528 IGHV1-2P23083 117 aa19.07■□□□□ 0.64
USP40-215ENST00000484528 CDKN2CP42773 168 aa19.07■□□□□ 0.64
USP40-215ENST00000484528 RPS4XP62701 263 aaKnown RBP19.07■□□□□ 0.64
USP40-215ENST00000484528 CSNK2A1P68400 391 aaPredicted RBP19.07■□□□□ 0.64
USP40-215ENST00000484528 SYPL1Q16563 259 aa19.07■□□□□ 0.64
USP40-215ENST00000484528 TNFAIP8L3Q5GJ75 292 aa19.07■□□□□ 0.64
USP40-215ENST00000484528 HHATQ5VTY9 493 aa19.07■□□□□ 0.64
USP40-215ENST00000484528 PIWIL2Q8TC59 973 aaKnown RBP19.07■□□□□ 0.64
USP40-215ENST00000484528 PNPT1Q8TCS8 783 aaKnown RBP19.07■□□□□ 0.64
USP40-215ENST00000484528 CNOT9Q92600 299 aaKnown RBP19.07■□□□□ 0.64
USP40-215ENST00000484528 CCDC115Q96NT0 180 aa19.07■□□□□ 0.64
USP40-215ENST00000484528 AIG1Q9NVV5 245 aa19.07■□□□□ 0.64
USP40-215ENST00000484528 CHRNA9Q9UGM1 479 aa19.07■□□□□ 0.64
Retrieved 100 of 20,778 RNA–protein pairs in 42.2 ms