RNA–Protein interactions for RNA: ENST00000478840.1

UPF3B-203, Transcript of UPF3B, regulator of nonsense mediated mRNA decay, humanhuman

TSL 3

Gene UPF3B, Length 748 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3B-203ENST00000478840 GFI1BQ5VTD9 330 aa3.98□□□□□ -1.77
UPF3B-203ENST00000478840 SLC25A42Q86VD7 318 aa3.98□□□□□ -1.77
UPF3B-203ENST00000478840 TCTEX1D2Q8WW35 142 aa3.98□□□□□ -1.77
UPF3B-203ENST00000478840 ST8SIA1Q92185 356 aa3.98□□□□□ -1.77
UPF3B-203ENST00000478840 NR4A3Q92570 626 aa3.98□□□□□ -1.77
UPF3B-203ENST00000478840 TRIM62Q9BVG3 475 aa3.98□□□□□ -1.77
UPF3B-203ENST00000478840 NCOR1P1Q9H4R4 102 aa3.98□□□□□ -1.77
UPF3B-203ENST00000478840 NANSQ9NR45 359 aa3.98□□□□□ -1.77
UPF3B-203ENST00000478840 WARS2Q9UGM6 360 aaKnown RBP3.98□□□□□ -1.77
UPF3B-203ENST00000478840 CAB39Q9Y376 341 aaPredicted RBP3.98□□□□□ -1.77
UPF3B-203ENST00000478840 PPIAL4AQ9Y536 164 aa3.98□□□□□ -1.77
UPF3B-203ENST00000478840 ANKRD30BQ9BXX2 1392 aa3.98□□□□□ -1.77
UPF3B-203ENST00000478840 TRDCB7Z8K6 153 aa3.97□□□□□ -1.77
UPF3B-203ENST00000478840 HAS3O00219 553 aa3.97□□□□□ -1.77
UPF3B-203ENST00000478840 OR10H3O60404 316 aa3.97□□□□□ -1.77
UPF3B-203ENST00000478840 PFKFB2O60825 505 aa3.97□□□□□ -1.77
UPF3B-203ENST00000478840 GNA14O95837 355 aa3.97□□□□□ -1.77
UPF3B-203ENST00000478840 LGALS2P05162 132 aa3.97□□□□□ -1.77
UPF3B-203ENST00000478840 CCDC130P13994 396 aa3.97□□□□□ -1.77
UPF3B-203ENST00000478840 GNA11P29992 359 aa3.97□□□□□ -1.77
UPF3B-203ENST00000478840 CRYBB2P43320 205 aa3.97□□□□□ -1.77
UPF3B-203ENST00000478840 RPL29P47914 159 aaKnown RBP3.97□□□□□ -1.77
UPF3B-203ENST00000478840 LMO4P61968 165 aa3.97□□□□□ -1.77
UPF3B-203ENST00000478840 BST2Q10589 180 aaKnown RBP3.97□□□□□ -1.77
UPF3B-203ENST00000478840 GLYR1Q49A26 553 aaPredicted RBP3.97□□□□□ -1.77
UPF3B-203ENST00000478840 HSP90AB3PQ58FF7 597 aa3.97□□□□□ -1.77
UPF3B-203ENST00000478840 KDM7AQ6ZMT4 941 aa3.97□□□□□ -1.77
UPF3B-203ENST00000478840 BHLHA9Q7RTU4 235 aa3.97□□□□□ -1.77
UPF3B-203ENST00000478840 C17orf82Q86X59 251 aaPredicted RBP3.97□□□□□ -1.77
UPF3B-203ENST00000478840 MCOLN2Q8IZK6 566 aa3.97□□□□□ -1.77
UPF3B-203ENST00000478840 PSMG2Q969U7 264 aa3.97□□□□□ -1.77
UPF3B-203ENST00000478840 C1orf147Q96MC9 270 aaPredicted RBP3.97□□□□□ -1.77
UPF3B-203ENST00000478840 TCEANC2Q96MN5 208 aa3.97□□□□□ -1.77
UPF3B-203ENST00000478840 RANBP9Q96S59 729 aa3.97□□□□□ -1.77
UPF3B-203ENST00000478840 NUP58Q9BVL2 599 aa3.97□□□□□ -1.77
UPF3B-203ENST00000478840 SLITRK2Q9H156 845 aa3.97□□□□□ -1.77
UPF3B-203ENST00000478840 ANKRD19PQ9H560 264 aa3.97□□□□□ -1.77
UPF3B-203ENST00000478840 NIPAL2Q9H841 368 aa3.97□□□□□ -1.77
UPF3B-203ENST00000478840 PDE10AQ9Y233 779 aa3.97□□□□□ -1.77
UPF3B-203ENST00000478840 IGHV3-35A0A0C4DH35 117 aa3.96□□□□□ -1.78
UPF3B-203ENST00000478840 BTBD17A6NE02 478 aa3.96□□□□□ -1.78
UPF3B-203ENST00000478840 IDSB3KWA1 339 aa3.96□□□□□ -1.78
UPF3B-203ENST00000478840 GOLGA8SH3BPF8 625 aa3.96□□□□□ -1.78
UPF3B-203ENST00000478840 CACNG3O60359 315 aa3.96□□□□□ -1.78
UPF3B-203ENST00000478840 WBP4O75554 376 aaKnown RBP3.96□□□□□ -1.78
UPF3B-203ENST00000478840 STSP08842 583 aa3.96□□□□□ -1.78
UPF3B-203ENST00000478840 FOLR2P14207 255 aa3.96□□□□□ -1.78
UPF3B-203ENST00000478840 ATP1B2P14415 290 aaPredicted RBP3.96□□□□□ -1.78
UPF3B-203ENST00000478840 GALP22466 123 aa3.96□□□□□ -1.78
UPF3B-203ENST00000478840 ADORA2BP29275 332 aa3.96□□□□□ -1.78
UPF3B-203ENST00000478840 OPRD1P41143 372 aa3.96□□□□□ -1.78
UPF3B-203ENST00000478840 LEPP41159 167 aa3.96□□□□□ -1.78
UPF3B-203ENST00000478840 PTGDSP41222 190 aa3.96□□□□□ -1.78
UPF3B-203ENST00000478840 KIR2DS2P43631 304 aa3.96□□□□□ -1.78
UPF3B-203ENST00000478840 GYG1P46976 350 aa3.96□□□□□ -1.78
UPF3B-203ENST00000478840 ATP5OP48047 213 aa3.96□□□□□ -1.78
UPF3B-203ENST00000478840 HLCSP50747 726 aa3.96□□□□□ -1.78
UPF3B-203ENST00000478840 PRRX1P54821 245 aa3.96□□□□□ -1.78
UPF3B-203ENST00000478840 RPS8P62241 208 aaKnown RBP3.96□□□□□ -1.78
UPF3B-203ENST00000478840 RUNX3Q13761 415 aa3.96□□□□□ -1.78
UPF3B-203ENST00000478840 GK3PQ14409 553 aa3.96□□□□□ -1.78
UPF3B-203ENST00000478840 TRIM16LQ309B1 348 aa3.96□□□□□ -1.78
UPF3B-203ENST00000478840 PRAMEF20Q5VT98 475 aa3.96□□□□□ -1.78
UPF3B-203ENST00000478840 OLFML2AQ68BL7 652 aa3.96□□□□□ -1.78
UPF3B-203ENST00000478840 OR5M10Q6IEU7 315 aa3.96□□□□□ -1.78
UPF3B-203ENST00000478840 CCDC137Q6PK04 289 aaKnown RBP3.96□□□□□ -1.78
UPF3B-203ENST00000478840 GPR137CQ8N3F9 429 aa3.96□□□□□ -1.78
UPF3B-203ENST00000478840 POM121L12Q8N7R1 296 aa3.96□□□□□ -1.78
UPF3B-203ENST00000478840 CCDC26Q8TAB7 109 aa3.96□□□□□ -1.78
UPF3B-203ENST00000478840 KCNG3Q8TAE7 436 aa3.96□□□□□ -1.78
UPF3B-203ENST00000478840 HTR3CQ8WXA8 447 aa3.96□□□□□ -1.78
UPF3B-203ENST00000478840 TIMD4Q96H15 378 aa3.96□□□□□ -1.78
UPF3B-203ENST00000478840 SOSTQ9BQB4 213 aa3.96□□□□□ -1.78
UPF3B-203ENST00000478840 NHEJ1Q9H9Q4 299 aaPredicted RBP3.96□□□□□ -1.78
UPF3B-203ENST00000478840 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP3.96□□□□□ -1.78
UPF3B-203ENST00000478840 SLC2A8Q9NY64 477 aa3.96□□□□□ -1.78
UPF3B-203ENST00000478840 PISDQ9UG56 409 aa3.96□□□□□ -1.78
UPF3B-203ENST00000478840 PEX16Q9Y5Y5 336 aa3.96□□□□□ -1.78
UPF3B-203ENST00000478840 KIF26BQ2KJY2 2108 aa3.95□□□□□ -1.78
UPF3B-203ENST00000478840 A0A1W2PPV9 198 aa3.95□□□□□ -1.78
UPF3B-203ENST00000478840 HEATR9A2RTY3 570 aa3.95□□□□□ -1.78
UPF3B-203ENST00000478840 FRG2CA6NGY1 282 aa3.95□□□□□ -1.78
UPF3B-203ENST00000478840 HCN1O60741 890 aa3.95□□□□□ -1.78
UPF3B-203ENST00000478840 ATP5LO75964 103 aa3.95□□□□□ -1.78
UPF3B-203ENST00000478840 DUSP14O95147 198 aaKnown RBP3.95□□□□□ -1.78
UPF3B-203ENST00000478840 LALBAP00709 142 aa3.95□□□□□ -1.78
UPF3B-203ENST00000478840 ZNF883P0CG24 379 aa3.95□□□□□ -1.78
UPF3B-203ENST00000478840 PGAM2P15259 253 aa3.95□□□□□ -1.78
UPF3B-203ENST00000478840 HMGB2P26583 209 aaKnown RBP3.95□□□□□ -1.78
UPF3B-203ENST00000478840 MAGEA9P43362 315 aa3.95□□□□□ -1.78
UPF3B-203ENST00000478840 TPMTP51580 245 aa3.95□□□□□ -1.78
UPF3B-203ENST00000478840 SLC8A3P57103 927 aa3.95□□□□□ -1.78
UPF3B-203ENST00000478840 CDK16Q00536 496 aa3.95□□□□□ -1.78
UPF3B-203ENST00000478840 VGLL4Q14135 290 aa3.95□□□□□ -1.78
UPF3B-203ENST00000478840 GRB7Q14451 532 aa3.95□□□□□ -1.78
UPF3B-203ENST00000478840 RCN1Q15293 331 aa3.95□□□□□ -1.78
UPF3B-203ENST00000478840 TGIF1Q15583 401 aa3.95□□□□□ -1.78
UPF3B-203ENST00000478840 ISXQ2M1V0 245 aa3.95□□□□□ -1.78
UPF3B-203ENST00000478840 BCL7AQ4VC05 210 aa3.95□□□□□ -1.78
UPF3B-203ENST00000478840 SLC22A10Q63ZE4 541 aa3.95□□□□□ -1.78
Retrieved 100 of 20,778 RNA–protein pairs in 47.9 ms