RNA–Protein interactions for RNA: ENST00000476903.1

CCDC88A-213, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 3

Gene CCDC88A, Length 419 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-213ENST00000476903 CLDN15P56746 228 aa6.1□□□□□ -1.43
CCDC88A-213ENST00000476903 CLDN8P56748 225 aa6.1□□□□□ -1.43
CCDC88A-213ENST00000476903 CLDN20P56880 219 aa6.1□□□□□ -1.43
CCDC88A-213ENST00000476903 PON3Q15166 354 aa6.1□□□□□ -1.43
CCDC88A-213ENST00000476903 SGCBQ16585 318 aa6.1□□□□□ -1.43
CCDC88A-213ENST00000476903 PGS1Q32NB8 556 aa6.1□□□□□ -1.43
CCDC88A-213ENST00000476903 PLPPR5Q32ZL2 321 aa6.1□□□□□ -1.43
CCDC88A-213ENST00000476903 C4orf46Q504U0 113 aa6.1□□□□□ -1.43
CCDC88A-213ENST00000476903 TNFAIP8L3Q5GJ75 292 aa6.1□□□□□ -1.43
CCDC88A-213ENST00000476903 DCST2Q5T1A1 773 aa6.1□□□□□ -1.43
CCDC88A-213ENST00000476903 MTERF4Q7Z6M4 381 aaKnown RBP6.1□□□□□ -1.43
CCDC88A-213ENST00000476903 CDC20BQ86Y33 519 aa6.1□□□□□ -1.43
CCDC88A-213ENST00000476903 WDR75Q8IWA0 830 aaKnown RBP6.1□□□□□ -1.43
CCDC88A-213ENST00000476903 RIMKLAQ8IXN7 391 aa6.1□□□□□ -1.43
CCDC88A-213ENST00000476903 LRRC34Q8IZ02 419 aa6.1□□□□□ -1.43
CCDC88A-213ENST00000476903 GTPBP8Q8N3Z3 284 aaPredicted RBP6.1□□□□□ -1.43
CCDC88A-213ENST00000476903 ZNF781Q8N8C0 355 aa6.1□□□□□ -1.43
CCDC88A-213ENST00000476903 B4GALNT2Q8NHY0 566 aa6.1□□□□□ -1.43
CCDC88A-213ENST00000476903 LINC01560Q8TB33 94 aa6.1□□□□□ -1.43
CCDC88A-213ENST00000476903 FNDC9Q8TBE3 224 aa6.1□□□□□ -1.43
CCDC88A-213ENST00000476903 FIG4Q92562 907 aa6.1□□□□□ -1.43
CCDC88A-213ENST00000476903 NRGNQ92686 78 aa6.1□□□□□ -1.43
CCDC88A-213ENST00000476903 PGM2Q96G03 612 aa6.1□□□□□ -1.43
CCDC88A-213ENST00000476903 ZNF845Q96IR2 970 aaPredicted RBP6.1□□□□□ -1.43
CCDC88A-213ENST00000476903 PPP1R36Q96LQ0 422 aa6.1□□□□□ -1.43
CCDC88A-213ENST00000476903 DACH2Q96NX9 599 aa6.1□□□□□ -1.43
CCDC88A-213ENST00000476903 SLC39A3Q9BRY0 314 aa6.1□□□□□ -1.43
CCDC88A-213ENST00000476903 DUSP26Q9BV47 211 aa6.1□□□□□ -1.43
CCDC88A-213ENST00000476903 HOXD1Q9GZZ0 328 aa6.1□□□□□ -1.43
CCDC88A-213ENST00000476903 CXorf36Q9H7Y0 433 aa6.1□□□□□ -1.43
CCDC88A-213ENST00000476903 RNF122Q9H9V4 155 aa6.1□□□□□ -1.43
CCDC88A-213ENST00000476903 KCNK9Q9NPC2 374 aa6.1□□□□□ -1.43
CCDC88A-213ENST00000476903 MED17Q9NVC6 651 aa6.1□□□□□ -1.43
CCDC88A-213ENST00000476903 FBXO34Q9NWN3 711 aa6.1□□□□□ -1.43
CCDC88A-213ENST00000476903 PAQR5Q9NXK6 330 aaPredicted RBP6.1□□□□□ -1.43
CCDC88A-213ENST00000476903 NDRG3Q9UGV2 375 aa6.1□□□□□ -1.43
CCDC88A-213ENST00000476903 HAO1Q9UJM8 370 aa6.1□□□□□ -1.43
CCDC88A-213ENST00000476903 VDAC3Q9Y277 283 aa6.1□□□□□ -1.43
CCDC88A-213ENST00000476903 HRNRQ86YZ3 2850 aaPredicted RBP6.1□□□□□ -1.43
CCDC88A-213ENST00000476903 TEP1Q99973 2627 aaKnown RBP6.09□□□□□ -1.43
CCDC88A-213ENST00000476903 PRRC2AP48634 2157 aaKnown RBP6.09□□□□□ -1.43
CCDC88A-213ENST00000476903 UQCRHLA0A096LP55 91 aa6.09□□□□□ -1.43
CCDC88A-213ENST00000476903 DUXAA6NLW8 204 aa6.09□□□□□ -1.43
CCDC88A-213ENST00000476903 RNASET2O00584 256 aaKnown RBP6.09□□□□□ -1.43
CCDC88A-213ENST00000476903 CASKO14936 926 aa6.09□□□□□ -1.43
CCDC88A-213ENST00000476903 SYNGR4O95473 234 aa6.09□□□□□ -1.43
CCDC88A-213ENST00000476903 AK1P00568 194 aa6.09□□□□□ -1.43
CCDC88A-213ENST00000476903 PLGP00747 810 aaPredicted RBP6.09□□□□□ -1.43
CCDC88A-213ENST00000476903 BGNP21810 368 aa6.09□□□□□ -1.43
CCDC88A-213ENST00000476903 ME2P23368 584 aa6.09□□□□□ -1.43
CCDC88A-213ENST00000476903 EIF1P41567 113 aaKnown RBP6.09□□□□□ -1.43
CCDC88A-213ENST00000476903 PCYT1AP49585 367 aa6.09□□□□□ -1.43
CCDC88A-213ENST00000476903 ART1P52961 327 aa6.09□□□□□ -1.43
CCDC88A-213ENST00000476903 IST1P53990 364 aa6.09□□□□□ -1.43
CCDC88A-213ENST00000476903 ATP12AP54707 1039 aa6.09□□□□□ -1.43
CCDC88A-213ENST00000476903 SUMO3P55854 103 aaPredicted RBP6.09□□□□□ -1.43
CCDC88A-213ENST00000476903 HBA1P69905 142 aa6.09□□□□□ -1.43
CCDC88A-213ENST00000476903 SIRPAP78324 504 aa6.09□□□□□ -1.43
CCDC88A-213ENST00000476903 STX3Q13277 289 aa6.09□□□□□ -1.43
CCDC88A-213ENST00000476903 CD226Q15762 336 aa6.09□□□□□ -1.43
CCDC88A-213ENST00000476903 KLHL26Q53HC5 615 aa6.09□□□□□ -1.43
CCDC88A-213ENST00000476903 PDSS1Q5T2R2 415 aa6.09□□□□□ -1.43
CCDC88A-213ENST00000476903 PPP4R4Q6NUP7 873 aa6.09□□□□□ -1.43
CCDC88A-213ENST00000476903 VWA1Q6PCB0 445 aa6.09□□□□□ -1.43
CCDC88A-213ENST00000476903 ESPNLQ6ZVH7 1005 aa6.09□□□□□ -1.43
CCDC88A-213ENST00000476903 VPS37AQ8NEZ2 397 aa6.09□□□□□ -1.43
CCDC88A-213ENST00000476903 OR8J2Q8NGG1 315 aa6.09□□□□□ -1.43
CCDC88A-213ENST00000476903 OR4A15Q8NGL6 344 aa6.09□□□□□ -1.43
CCDC88A-213ENST00000476903 OR10D3Q8NH80 312 aa6.09□□□□□ -1.43
CCDC88A-213ENST00000476903 OR5AK3PQ8NH89 298 aa6.09□□□□□ -1.43
CCDC88A-213ENST00000476903 PHOSPHO1Q8TCT1 267 aa6.09□□□□□ -1.43
CCDC88A-213ENST00000476903 PMM1Q92871 262 aa6.09□□□□□ -1.43
CCDC88A-213ENST00000476903 STARD4Q96DR4 205 aa6.09□□□□□ -1.43
CCDC88A-213ENST00000476903 SH3YL1Q96HL8 342 aaPredicted RBP6.09□□□□□ -1.43
CCDC88A-213ENST00000476903 RNF145Q96MT1 663 aa6.09□□□□□ -1.43
CCDC88A-213ENST00000476903 OR7D2Q96RA2 312 aa6.09□□□□□ -1.43
CCDC88A-213ENST00000476903 SORT1Q99523 831 aa6.09□□□□□ -1.43
CCDC88A-213ENST00000476903 FOXC2Q99958 501 aa6.09□□□□□ -1.43
CCDC88A-213ENST00000476903 PAIP2Q9BPZ3 127 aaKnown RBP6.09□□□□□ -1.43
CCDC88A-213ENST00000476903 PRRG4Q9BZD6 226 aa6.09□□□□□ -1.43
CCDC88A-213ENST00000476903 DPY30Q9C005 99 aa6.09□□□□□ -1.43
CCDC88A-213ENST00000476903 C20orf27Q9GZN8 174 aa6.09□□□□□ -1.43
CCDC88A-213ENST00000476903 ELOVL5Q9NYP7 299 aa6.09□□□□□ -1.43
CCDC88A-213ENST00000476903 MCTS1Q9ULC4 181 aaKnown RBP6.09□□□□□ -1.43
CCDC88A-213ENST00000476903 PCDHGB4Q9UN71 923 aa6.09□□□□□ -1.43
CCDC88A-213ENST00000476903 EMC9Q9Y3B6 208 aa6.09□□□□□ -1.43
CCDC88A-213ENST00000476903 DTNAQ9Y4J8 743 aa6.09□□□□□ -1.43
CCDC88A-213ENST00000476903 HIVEP1P15822 2718 aa6.08□□□□□ -1.44
CCDC88A-213ENST00000476903 NPIPA5A0A0B4J1W7 369 aa6.08□□□□□ -1.44
CCDC88A-213ENST00000476903 RNF103-CHMP3A0A140T963 221 aa6.08□□□□□ -1.44
CCDC88A-213ENST00000476903 GJE1A6NN92 205 aa6.08□□□□□ -1.44
CCDC88A-213ENST00000476903 NPIPA7E9PJI5 369 aa6.08□□□□□ -1.44
CCDC88A-213ENST00000476903 GTPBP1O00178 669 aaKnown RBP6.08□□□□□ -1.44
CCDC88A-213ENST00000476903 TNFSF11O14788 317 aa6.08□□□□□ -1.44
CCDC88A-213ENST00000476903 ADAMDEC1O15204 470 aa6.08□□□□□ -1.44
CCDC88A-213ENST00000476903 STX11O75558 287 aa6.08□□□□□ -1.44
CCDC88A-213ENST00000476903 AQP8O94778 261 aa6.08□□□□□ -1.44
CCDC88A-213ENST00000476903 NUDT14O95848 222 aa6.08□□□□□ -1.44
CCDC88A-213ENST00000476903 AGR2O95994 175 aa6.08□□□□□ -1.44
CCDC88A-213ENST00000476903 RAF1P04049 648 aa6.08□□□□□ -1.44
Retrieved 100 of 20,778 RNA–protein pairs in 27.3 ms