RNA–Protein interactions for RNA: ENST00000476739.5

HDAC3-208, Transcript of histone deacetylase 3, humanhuman

TSL 3

Gene HDAC3, Length 422 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3-208ENST00000476739 RNF220Q5VTB9 566 aa8.7□□□□□ -1.02
HDAC3-208ENST00000476739 SP5Q6BEB4 398 aaPredicted RBP8.7□□□□□ -1.02
HDAC3-208ENST00000476739 ZNF787Q6DD87 383 aa8.7□□□□□ -1.02
HDAC3-208ENST00000476739 SERPINA11Q86U17 422 aa8.7□□□□□ -1.02
HDAC3-208ENST00000476739 CALHM3Q86XJ0 350 aa8.7□□□□□ -1.02
HDAC3-208ENST00000476739 ADGRG3Q86Y34 549 aa8.7□□□□□ -1.02
HDAC3-208ENST00000476739 GRAMD2AQ8IUY3 354 aa8.7□□□□□ -1.02
HDAC3-208ENST00000476739 CMIPQ8IY22 773 aa8.7□□□□□ -1.02
HDAC3-208ENST00000476739 OR2V1Q8NHB1 315 aa8.7□□□□□ -1.02
HDAC3-208ENST00000476739 FNDC9Q8TBE3 224 aa8.7□□□□□ -1.02
HDAC3-208ENST00000476739 ASB5Q8WWX0 329 aa8.7□□□□□ -1.02
HDAC3-208ENST00000476739 ST8SIA1Q92185 356 aa8.7□□□□□ -1.02
HDAC3-208ENST00000476739 WNT2BQ93097 391 aa8.7□□□□□ -1.02
HDAC3-208ENST00000476739 DNAJA3Q96EY1 480 aa8.7□□□□□ -1.02
HDAC3-208ENST00000476739 KLHL15Q96M94 604 aa8.7□□□□□ -1.02
HDAC3-208ENST00000476739 SPATA9Q9BWV2 254 aa8.7□□□□□ -1.02
HDAC3-208ENST00000476739 SRXN1Q9BYN0 137 aa8.7□□□□□ -1.02
HDAC3-208ENST00000476739 NPDC1Q9NQX5 325 aaPredicted RBP8.7□□□□□ -1.02
HDAC3-208ENST00000476739 ACER3Q9NUN7 267 aa8.7□□□□□ -1.02
HDAC3-208ENST00000476739 MRGBPQ9NV56 204 aa8.7□□□□□ -1.02
HDAC3-208ENST00000476739 KLF2Q9Y5W3 355 aaPredicted RBP8.7□□□□□ -1.02
HDAC3-208ENST00000476739 HECTD1Q9ULT8 2610 aa8.7□□□□□ -1.02
HDAC3-208ENST00000476739 CFAP73A6NFT4 308 aa8.69□□□□□ -1.02
HDAC3-208ENST00000476739 SLC22A20A6NK97 555 aa8.69□□□□□ -1.02
HDAC3-208ENST00000476739 CCT8L1PA6NM43 557 aa8.69□□□□□ -1.02
HDAC3-208ENST00000476739 M0QX08 132 aa8.69□□□□□ -1.02
HDAC3-208ENST00000476739 AIM2O14862 343 aa8.69□□□□□ -1.02
HDAC3-208ENST00000476739 TNFSF13O75888 250 aa8.69□□□□□ -1.02
HDAC3-208ENST00000476739 MFN2O95140 757 aa8.69□□□□□ -1.02
HDAC3-208ENST00000476739 TMIGD3P0DMS9 266 aaPredicted RBP8.69□□□□□ -1.02
HDAC3-208ENST00000476739 CCNA2P20248 432 aa8.69□□□□□ -1.02
HDAC3-208ENST00000476739 CTSSP25774 331 aa8.69□□□□□ -1.02
HDAC3-208ENST00000476739 ELK4P28324 431 aa8.69□□□□□ -1.02
HDAC3-208ENST00000476739 TACR3P29371 465 aa8.69□□□□□ -1.02
HDAC3-208ENST00000476739 CPA2P48052 419 aa8.69□□□□□ -1.02
HDAC3-208ENST00000476739 CRYBA2P53672 197 aa8.69□□□□□ -1.02
HDAC3-208ENST00000476739 EEFSECP57772 596 aaKnown RBP8.69□□□□□ -1.02
HDAC3-208ENST00000476739 SELENBP1Q13228 472 aa8.69□□□□□ -1.02
HDAC3-208ENST00000476739 LARS2Q15031 903 aaKnown RBP8.69□□□□□ -1.02
HDAC3-208ENST00000476739 SF3B4Q15427 424 aaKnown RBP eCLIP8.69□□□□□ -1.024e-7■■■■■ 35.9
HDAC3-208ENST00000476739 SGCBQ16585 318 aa8.69□□□□□ -1.02
HDAC3-208ENST00000476739 HBMQ6B0K9 141 aa8.69□□□□□ -1.02
HDAC3-208ENST00000476739 PPP4R4Q6NUP7 873 aa8.69□□□□□ -1.02
HDAC3-208ENST00000476739 ESPNLQ6ZVH7 1005 aa8.69□□□□□ -1.02
HDAC3-208ENST00000476739 CHMP1BQ7LBR1 199 aa8.69□□□□□ -1.02
HDAC3-208ENST00000476739 GRINAQ7Z429 371 aa8.69□□□□□ -1.02
HDAC3-208ENST00000476739 P4HA3Q7Z4N8 544 aa8.69□□□□□ -1.02
HDAC3-208ENST00000476739 SMYD1Q8NB12 490 aa8.69□□□□□ -1.02
HDAC3-208ENST00000476739 C11orf65Q8NCR3 313 aa8.69□□□□□ -1.02
HDAC3-208ENST00000476739 HIPK4Q8NE63 616 aa8.69□□□□□ -1.02
HDAC3-208ENST00000476739 OR8J3Q8NGG0 315 aa8.69□□□□□ -1.02
HDAC3-208ENST00000476739 BCAS4Q8TDM0 211 aa8.69□□□□□ -1.02
HDAC3-208ENST00000476739 TMEM234Q8WY98 164 aa8.69□□□□□ -1.02
HDAC3-208ENST00000476739 ROBO4Q8WZ75 1007 aa8.69□□□□□ -1.02
HDAC3-208ENST00000476739 OSTF1Q92882 214 aa8.69□□□□□ -1.02
HDAC3-208ENST00000476739 ZNF583Q96ND8 569 aa8.69□□□□□ -1.02
HDAC3-208ENST00000476739 CCT8L2Q96SF2 557 aa8.69□□□□□ -1.02
HDAC3-208ENST00000476739 GPATCH1Q9BRR8 931 aaKnown RBP8.69□□□□□ -1.02
HDAC3-208ENST00000476739 PRR14Q9BWN1 585 aa8.69□□□□□ -1.02
HDAC3-208ENST00000476739 OR11A1Q9GZK7 315 aa8.69□□□□□ -1.02
HDAC3-208ENST00000476739 CMTM6Q9NX76 183 aa8.69□□□□□ -1.02
HDAC3-208ENST00000476739 OSGIN1Q9UJX0 560 aa8.69□□□□□ -1.02
HDAC3-208ENST00000476739 IFT52Q9Y366 437 aa8.69□□□□□ -1.02
HDAC3-208ENST00000476739 UTP20O75691 2785 aaKnown RBP8.68□□□□□ -1.02
HDAC3-208ENST00000476739 TMED7-TICAM2A0A0A6YYA0 188 aa8.68□□□□□ -1.02
HDAC3-208ENST00000476739 TMEM72A0PK05 275 aa8.68□□□□□ -1.02
HDAC3-208ENST00000476739 FAAHO00519 579 aa8.68□□□□□ -1.02
HDAC3-208ENST00000476739 TPST2O60704 377 aa8.68□□□□□ -1.02
HDAC3-208ENST00000476739 NPPAP01160 153 aa8.68□□□□□ -1.02
HDAC3-208ENST00000476739 ENPP1P22413 925 aa8.68□□□□□ -1.02
HDAC3-208ENST00000476739 ME2P23368 584 aa8.68□□□□□ -1.02
HDAC3-208ENST00000476739 HTR2AP28223 471 aa8.68□□□□□ -1.02
HDAC3-208ENST00000476739 PRKAR1BP31321 381 aa8.68□□□□□ -1.02
HDAC3-208ENST00000476739 APOBEC1P41238 236 aaKnown RBP8.68□□□□□ -1.02
HDAC3-208ENST00000476739 SH3BGRP55822 239 aaPredicted RBP8.68□□□□□ -1.02
HDAC3-208ENST00000476739 CARD18P57730 90 aa8.68□□□□□ -1.02
HDAC3-208ENST00000476739 RPS3AP61247 264 aaKnown RBP8.68□□□□□ -1.02
HDAC3-208ENST00000476739 RBBP4Q09028 425 aa8.68□□□□□ -1.02
HDAC3-208ENST00000476739 SNTB1Q13884 538 aaKnown RBP8.68□□□□□ -1.02
HDAC3-208ENST00000476739 DUSP7Q16829 419 aa8.68□□□□□ -1.02
HDAC3-208ENST00000476739 VMACQ2NL98 169 aa8.68□□□□□ -1.02
HDAC3-208ENST00000476739 C3orf33Q6P1S2 294 aa8.68□□□□□ -1.02
HDAC3-208ENST00000476739 C8orf82Q6P1X6 216 aaPredicted RBP8.68□□□□□ -1.02
HDAC3-208ENST00000476739 VWA1Q6PCB0 445 aa8.68□□□□□ -1.02
HDAC3-208ENST00000476739 DHRS4L2Q6PKH6 230 aa8.68□□□□□ -1.02
HDAC3-208ENST00000476739 SLC15A3Q8IY34 581 aa8.68□□□□□ -1.02
HDAC3-208ENST00000476739 PCYOX1LQ8NBM8 494 aa8.68□□□□□ -1.02
HDAC3-208ENST00000476739 GPR32P1Q8NGA4 272 aa8.68□□□□□ -1.02
HDAC3-208ENST00000476739 TAMM41Q96BW9 452 aa8.68□□□□□ -1.02
HDAC3-208ENST00000476739 ARL5BQ96KC2 179 aa8.68□□□□□ -1.02
HDAC3-208ENST00000476739 TM9SF2Q99805 663 aa8.68□□□□□ -1.02
HDAC3-208ENST00000476739 ECSITQ9BQ95 431 aa8.68□□□□□ -1.02
HDAC3-208ENST00000476739 ADAM19Q9H013 955 aa8.68□□□□□ -1.02
HDAC3-208ENST00000476739 RNF122Q9H9V4 155 aa8.68□□□□□ -1.02
HDAC3-208ENST00000476739 KCNJ16Q9NPI9 418 aa8.68□□□□□ -1.02
HDAC3-208ENST00000476739 GID8Q9NWU2 228 aa8.68□□□□□ -1.02
HDAC3-208ENST00000476739 ZNF629Q9UEG4 869 aaPredicted RBP8.68□□□□□ -1.02
HDAC3-208ENST00000476739 CHRNA9Q9UGM1 479 aa8.68□□□□□ -1.02
HDAC3-208ENST00000476739 CLEC4AQ9UMR7 237 aa8.68□□□□□ -1.02
HDAC3-208ENST00000476739 ZNF232Q9UNY5 417 aa8.68□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 30.1 ms