RNA–Protein interactions for RNA: ENST00000475549.1

HDAC3-207, Transcript of histone deacetylase 3, humanhuman

TSL 2

Gene HDAC3, Length 297 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3-207ENST00000475549 SVEP1Q4LDE5 3571 aa6.2□□□□□ -1.42
HDAC3-207ENST00000475549 CUBNO60494 3623 aa6.2□□□□□ -1.42
HDAC3-207ENST00000475549 TLN2Q9Y4G6 2542 aa6.2□□□□□ -1.42
HDAC3-207ENST00000475549 IGKV3D-15A0A087WSY6 115 aa6.2□□□□□ -1.42
HDAC3-207ENST00000475549 RNF103-CHMP3A0A140T963 221 aa6.2□□□□□ -1.42
HDAC3-207ENST00000475549 DUXAA6NLW8 204 aa6.2□□□□□ -1.42
HDAC3-207ENST00000475549 FAM171A2A8MVW0 826 aa6.2□□□□□ -1.42
HDAC3-207ENST00000475549 HMGN4O00479 90 aa6.2□□□□□ -1.42
HDAC3-207ENST00000475549 BIRC5O15392 142 aa6.2□□□□□ -1.42
HDAC3-207ENST00000475549 KIAA0513O60268 411 aa6.2□□□□□ -1.42
HDAC3-207ENST00000475549 CYP7B1O75881 506 aa6.2□□□□□ -1.42
HDAC3-207ENST00000475549 CPSF4O95639 269 aaKnown RBP6.2□□□□□ -1.42
HDAC3-207ENST00000475549 CSTAP01040 98 aa6.2□□□□□ -1.42
HDAC3-207ENST00000475549 IGHV3-9P01782 118 aa6.2□□□□□ -1.42
HDAC3-207ENST00000475549 IGHV4-39P01824 125 aa6.2□□□□□ -1.42
HDAC3-207ENST00000475549 FESP07332 822 aa6.2□□□□□ -1.42
HDAC3-207ENST00000475549 GUSBP08236 651 aa6.2□□□□□ -1.42
HDAC3-207ENST00000475549 KRT16P08779 473 aa6.2□□□□□ -1.42
HDAC3-207ENST00000475549 ALDOCP09972 364 aaKnown RBP6.2□□□□□ -1.42
HDAC3-207ENST00000475549 DDX5P17844 614 aaKnown RBP6.2□□□□□ -1.42
HDAC3-207ENST00000475549 BGNP21810 368 aa6.2□□□□□ -1.42
HDAC3-207ENST00000475549 UQCRC2P22695 453 aa6.2□□□□□ -1.42
HDAC3-207ENST00000475549 IL32P24001 234 aa6.2□□□□□ -1.42
HDAC3-207ENST00000475549 SLC7A1P30825 629 aa6.2□□□□□ -1.42
HDAC3-207ENST00000475549 RYKP34925 604 aa6.2□□□□□ -1.42
HDAC3-207ENST00000475549 SOAT1P35610 550 aa6.2□□□□□ -1.42
HDAC3-207ENST00000475549 CDKN1AP38936 164 aa6.2□□□□□ -1.42
HDAC3-207ENST00000475549 CDKN2CP42773 168 aa6.2□□□□□ -1.42
HDAC3-207ENST00000475549 SLC1A6P48664 564 aa6.2□□□□□ -1.42
HDAC3-207ENST00000475549 RPL14P50914 215 aaKnown RBP6.2□□□□□ -1.42
HDAC3-207ENST00000475549 UFM1P61960 85 aa6.2□□□□□ -1.42
HDAC3-207ENST00000475549 H3F3AP84243 136 aa6.2□□□□□ -1.42
HDAC3-207ENST00000475549 CHRNEQ04844 493 aa6.2□□□□□ -1.42
HDAC3-207ENST00000475549 MERTKQ12866 999 aa6.2□□□□□ -1.42
HDAC3-207ENST00000475549 ZNF672Q499Z4 452 aaPredicted RBP6.2□□□□□ -1.42
HDAC3-207ENST00000475549 SPANXN4Q5MJ08 99 aa6.2□□□□□ -1.42
HDAC3-207ENST00000475549 TNFAIP8L2Q6P589 184 aaPredicted RBP6.2□□□□□ -1.42
HDAC3-207ENST00000475549 EMBQ6PCB8 327 aa6.2□□□□□ -1.42
HDAC3-207ENST00000475549 BHLHB9Q6PI77 547 aa6.2□□□□□ -1.42
HDAC3-207ENST00000475549 DNM1P46Q6ZS02 220 aa6.2□□□□□ -1.42
HDAC3-207ENST00000475549 BHLHA15Q7RTS1 189 aaPredicted RBP6.2□□□□□ -1.42
HDAC3-207ENST00000475549 MTDHQ86UE4 582 aaKnown RBP6.2□□□□□ -1.42
HDAC3-207ENST00000475549 CCDC103Q8IW40 242 aa6.2□□□□□ -1.42
HDAC3-207ENST00000475549 MREGQ8N565 214 aa6.2□□□□□ -1.42
HDAC3-207ENST00000475549 TMCO5AQ8N6Q1 288 aa6.2□□□□□ -1.42
HDAC3-207ENST00000475549 ZNF433Q8N7K0 673 aaPredicted RBP6.2□□□□□ -1.42
HDAC3-207ENST00000475549 ANKFN1Q8N957 763 aa6.2□□□□□ -1.42
HDAC3-207ENST00000475549 KBTBD8Q8NFY9 601 aa6.2□□□□□ -1.42
HDAC3-207ENST00000475549 OR4A15Q8NGL6 344 aa6.2□□□□□ -1.42
HDAC3-207ENST00000475549 SMAP2Q8WU79 429 aaPredicted RBP6.2□□□□□ -1.42
HDAC3-207ENST00000475549 TMEM171Q8WVE6 324 aa6.2□□□□□ -1.42
HDAC3-207ENST00000475549 ST8SIA1Q92185 356 aa6.2□□□□□ -1.42
HDAC3-207ENST00000475549 CNOT9Q92600 299 aaKnown RBP6.2□□□□□ -1.42
HDAC3-207ENST00000475549 TESCQ96BS2 214 aa6.2□□□□□ -1.42
HDAC3-207ENST00000475549 ROPN1LQ96C74 230 aa6.2□□□□□ -1.42
HDAC3-207ENST00000475549 NEURL3Q96EH8 262 aa6.2□□□□□ -1.42
HDAC3-207ENST00000475549 ZIM3Q96PE6 472 aa6.2□□□□□ -1.42
HDAC3-207ENST00000475549 INPP5KQ9BT40 448 aa6.2□□□□□ -1.42
HDAC3-207ENST00000475549 PARD6BQ9BYG5 372 aa6.2□□□□□ -1.42
HDAC3-207ENST00000475549 NUF2Q9BZD4 464 aa6.2□□□□□ -1.42
HDAC3-207ENST00000475549 OR11A1Q9GZK7 315 aa6.2□□□□□ -1.42
HDAC3-207ENST00000475549 CXorf56Q9H5V9 222 aa6.2□□□□□ -1.42
HDAC3-207ENST00000475549 CTPS2Q9NRF8 586 aa6.2□□□□□ -1.42
HDAC3-207ENST00000475549 SLC6A13Q9NSD5 602 aa6.2□□□□□ -1.42
HDAC3-207ENST00000475549 ACER3Q9NUN7 267 aa6.2□□□□□ -1.42
HDAC3-207ENST00000475549 KLHL9Q9P2J3 617 aa6.2□□□□□ -1.42
HDAC3-207ENST00000475549 LIPT1Q9Y234 373 aa6.2□□□□□ -1.42
HDAC3-207ENST00000475549 EPB41L3Q9Y2J2 1087 aaPredicted RBP6.2□□□□□ -1.42
HDAC3-207ENST00000475549 RAP2CQ9Y3L5 183 aa6.2□□□□□ -1.42
HDAC3-207ENST00000475549 RNF115Q9Y4L5 304 aa6.2□□□□□ -1.42
HDAC3-207ENST00000475549 MAGED1Q9Y5V3 778 aaPredicted RBP6.2□□□□□ -1.42
HDAC3-207ENST00000475549 PRR14LQ5THK1 2151 aa6.2□□□□□ -1.42
HDAC3-207ENST00000475549 USF3Q68DE3 2245 aa6.19□□□□□ -1.42
HDAC3-207ENST00000475549 UQCRHLA0A096LP55 91 aa6.19□□□□□ -1.42
HDAC3-207ENST00000475549 GOLGA8QA0A0J9YX86 632 aa6.19□□□□□ -1.42
HDAC3-207ENST00000475549 A0A1W2PR80 420 aa6.19□□□□□ -1.42
HDAC3-207ENST00000475549 GOLGA8OA6NCC3 632 aa6.19□□□□□ -1.42
HDAC3-207ENST00000475549 AGAP5A6NIR3 686 aa6.19□□□□□ -1.42
HDAC3-207ENST00000475549 RNF223E7ERA6 249 aa6.19□□□□□ -1.42
HDAC3-207ENST00000475549 GOLGA8NF8WBI6 632 aa6.19□□□□□ -1.42
HDAC3-207ENST00000475549 PDLIM1O00151 329 aa6.19□□□□□ -1.42
HDAC3-207ENST00000475549 SULT2B1O00204 365 aa6.19□□□□□ -1.42
HDAC3-207ENST00000475549 SDHDO14521 159 aa6.19□□□□□ -1.42
HDAC3-207ENST00000475549 AP3D1O14617 1153 aa6.19□□□□□ -1.42
HDAC3-207ENST00000475549 TMCC2O75069 709 aa6.19□□□□□ -1.42
HDAC3-207ENST00000475549 AK1P00568 194 aa6.19□□□□□ -1.42
HDAC3-207ENST00000475549 CD3EP07766 207 aa6.19□□□□□ -1.42
HDAC3-207ENST00000475549 CHRM4P08173 479 aa6.19□□□□□ -1.42
HDAC3-207ENST00000475549 MYZAPP0CAP1 466 aa6.19□□□□□ -1.42
HDAC3-207ENST00000475549 COX5AP20674 150 aa6.19□□□□□ -1.42
HDAC3-207ENST00000475549 ACVR1BP36896 505 aa6.19□□□□□ -1.42
HDAC3-207ENST00000475549 APOBEC1P41238 236 aaKnown RBP6.19□□□□□ -1.42
HDAC3-207ENST00000475549 MVDP53602 400 aa6.19□□□□□ -1.42
HDAC3-207ENST00000475549 NME5P56597 212 aa6.19□□□□□ -1.42
HDAC3-207ENST00000475549 WDR4P57081 412 aaKnown RBP6.19□□□□□ -1.42
HDAC3-207ENST00000475549 RPS4XP62701 263 aaKnown RBP6.19□□□□□ -1.42
HDAC3-207ENST00000475549 KCNJ10P78508 379 aa6.19□□□□□ -1.42
HDAC3-207ENST00000475549 BST1Q10588 318 aa6.19□□□□□ -1.42
HDAC3-207ENST00000475549 MAD2L1Q13257 205 aaPredicted RBP6.19□□□□□ -1.42
HDAC3-207ENST00000475549 PDK3Q15120 406 aa6.19□□□□□ -1.42
Retrieved 100 of 20,778 RNA–protein pairs in 27.2 ms