RNA–Protein interactions for RNA: ENST00000474432.1

COL7A1-209, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 3

Gene COL7A1, Length 728 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-209ENST00000474432 SFRP5Q5T4F7 317 aa16.48■□□□□ 0.23
COL7A1-209ENST00000474432 TMPPEQ6ZT21 453 aa16.48■□□□□ 0.23
COL7A1-209ENST00000474432 LRRC75A-AS1Q8N1F1 130 aa16.48■□□□□ 0.23
COL7A1-209ENST00000474432 CNOT9Q92600 299 aaKnown RBP16.48■□□□□ 0.23
COL7A1-209ENST00000474432 POM121Q96HA1 1249 aa16.48■□□□□ 0.23
COL7A1-209ENST00000474432 OR5B2Q96R09 309 aa16.48■□□□□ 0.23
COL7A1-209ENST00000474432 OR52E6Q96RD3 313 aa16.48■□□□□ 0.23
COL7A1-209ENST00000474432 PANX1Q96RD7 426 aa16.48■□□□□ 0.23
COL7A1-209ENST00000474432 ZNF300Q96RE9 604 aaPredicted RBP16.48■□□□□ 0.23
COL7A1-209ENST00000474432 CTPS2Q9NRF8 586 aa16.48■□□□□ 0.23
COL7A1-209ENST00000474432 SLC35A3Q9Y2D2 325 aa16.48■□□□□ 0.23
COL7A1-209ENST00000474432 UQCRHLA0A096LP55 91 aa16.47■□□□□ 0.23
COL7A1-209ENST00000474432 AGAP5A6NIR3 686 aa16.47■□□□□ 0.23
COL7A1-209ENST00000474432 TRPC5OSA6NMA1 111 aa16.47■□□□□ 0.23
COL7A1-209ENST00000474432 HOXB4P17483 251 aaPredicted RBP16.47■□□□□ 0.23
COL7A1-209ENST00000474432 FPR1P21462 350 aa16.47■□□□□ 0.23
COL7A1-209ENST00000474432 RPS4Y1P22090 263 aaKnown RBP16.47■□□□□ 0.23
COL7A1-209ENST00000474432 OR3A2P47893 321 aa16.47■□□□□ 0.23
COL7A1-209ENST00000474432 DIO1P49895 249 aa16.47■□□□□ 0.23
COL7A1-209ENST00000474432 GPAT3Q53EU6 434 aa16.47■□□□□ 0.23
COL7A1-209ENST00000474432 SYT14P1Q58G82 188 aa16.47■□□□□ 0.23
COL7A1-209ENST00000474432 SHEQ5VZ18 495 aa16.47■□□□□ 0.23
COL7A1-209ENST00000474432 ADGRG3Q86Y34 549 aa16.47■□□□□ 0.23
COL7A1-209ENST00000474432 WFDC8Q8IUA0 241 aa16.47■□□□□ 0.23
COL7A1-209ENST00000474432 RAB3IL1Q8TBN0 382 aa16.47■□□□□ 0.23
COL7A1-209ENST00000474432 TMEM234Q8WY98 164 aa16.47■□□□□ 0.23
COL7A1-209ENST00000474432 PIGTQ969N2 578 aa16.47■□□□□ 0.23
COL7A1-209ENST00000474432 PLPPR2Q96GM1 343 aa16.47■□□□□ 0.23
COL7A1-209ENST00000474432 ARL5BQ96KC2 179 aa16.47■□□□□ 0.23
COL7A1-209ENST00000474432 TRNT1Q96Q11 434 aaKnown RBP16.47■□□□□ 0.23
COL7A1-209ENST00000474432 OR52B2Q96RD2 323 aa16.47■□□□□ 0.23
COL7A1-209ENST00000474432 SMR3AQ99954 134 aa16.47■□□□□ 0.23
COL7A1-209ENST00000474432 MANSC1Q9H8J5 431 aa16.47■□□□□ 0.23
COL7A1-209ENST00000474432 EXOSC3Q9NQT5 275 aaKnown RBP16.47■□□□□ 0.23
COL7A1-209ENST00000474432 PRSS50Q9UI38 385 aa16.47■□□□□ 0.23
COL7A1-209ENST00000474432 USF3Q68DE3 2245 aa16.47■□□□□ 0.23
COL7A1-209ENST00000474432 AP3D1O14617 1153 aa16.46■□□□□ 0.23
COL7A1-209ENST00000474432 ADAP00813 363 aa16.46■□□□□ 0.23
COL7A1-209ENST00000474432 NTF4P34130 210 aa16.46■□□□□ 0.23
COL7A1-209ENST00000474432 RYKP34925 604 aa16.46■□□□□ 0.23
COL7A1-209ENST00000474432 RASGEF1BQ0VAM2 473 aa16.46■□□□□ 0.23
COL7A1-209ENST00000474432 TAB1Q15750 504 aa16.46■□□□□ 0.23
COL7A1-209ENST00000474432 PDCD4Q53EL6 469 aaKnown RBP16.46■□□□□ 0.23
COL7A1-209ENST00000474432 ABLIM2Q6H8Q1 611 aa16.46■□□□□ 0.23
COL7A1-209ENST00000474432 ZNF704Q6ZNC4 412 aaPredicted RBP16.46■□□□□ 0.23
COL7A1-209ENST00000474432 C20orf204Q6ZNR8 217 aa16.46■□□□□ 0.23
COL7A1-209ENST00000474432 LRRC74BQ6ZQY2 392 aa16.46■□□□□ 0.23
COL7A1-209ENST00000474432 ZNF621Q6ZSS3 439 aa16.46■□□□□ 0.23
COL7A1-209ENST00000474432 ATG4DQ86TL0 474 aaPredicted RBP16.46■□□□□ 0.23
COL7A1-209ENST00000474432 GLB1L3Q8NCI6 653 aaPredicted RBP16.46■□□□□ 0.23
COL7A1-209ENST00000474432 STEAP2Q8NFT2 490 aa16.46■□□□□ 0.23
COL7A1-209ENST00000474432 LILRB1Q8NHL6 650 aaPredicted RBP16.46■□□□□ 0.23
COL7A1-209ENST00000474432 PNPT1Q8TCS8 783 aaKnown RBP16.46■□□□□ 0.23
COL7A1-209ENST00000474432 ZNF775Q96BV0 537 aaPredicted RBP16.46■□□□□ 0.23
COL7A1-209ENST00000474432 CCL19Q99731 98 aa16.46■□□□□ 0.23
COL7A1-209ENST00000474432 HDHD5Q9BXW7 423 aa16.46■□□□□ 0.23
COL7A1-209ENST00000474432 FANCFQ9NPI8 374 aa16.46■□□□□ 0.23
COL7A1-209ENST00000474432 ST6GALNAC1Q9NSC7 600 aaPredicted RBP16.46■□□□□ 0.23
COL7A1-209ENST00000474432 KLHL9Q9P2J3 617 aa16.46■□□□□ 0.23
COL7A1-209ENST00000474432 LIPT1Q9Y234 373 aa16.46■□□□□ 0.23
COL7A1-209ENST00000474432 NAV3Q8IVL0 2385 aa16.46■□□□□ 0.23
COL7A1-209ENST00000474432 NSD1Q96L73 2696 aaPredicted RBP16.46■□□□□ 0.23
COL7A1-209ENST00000474432 ZNF716A6NP11 495 aa16.45■□□□□ 0.22
COL7A1-209ENST00000474432 ZNF724A8MTY0 619 aa16.45■□□□□ 0.22
COL7A1-209ENST00000474432 SLCO1B7G3V0H7 640 aa16.45■□□□□ 0.22
COL7A1-209ENST00000474432 SMPD2O60906 423 aa16.45■□□□□ 0.22
COL7A1-209ENST00000474432 FESP07332 822 aa16.45■□□□□ 0.22
COL7A1-209ENST00000474432 APOBEC1P41238 236 aaKnown RBP16.45■□□□□ 0.22
COL7A1-209ENST00000474432 Q5PR19 223 aa16.45■□□□□ 0.22
COL7A1-209ENST00000474432 ATG16L1Q676U5 607 aa16.45■□□□□ 0.22
COL7A1-209ENST00000474432 ZC3HAV1Q7Z2W4 902 aaKnown RBP16.45■□□□□ 0.22
COL7A1-209ENST00000474432 GRINAQ7Z429 371 aa16.45■□□□□ 0.22
COL7A1-209ENST00000474432 SLC25A43Q8WUT9 341 aaPredicted RBP16.45■□□□□ 0.22
COL7A1-209ENST00000474432 C18orf12Q96KH6 178 aa16.45■□□□□ 0.22
COL7A1-209ENST00000474432 TACO1Q9BSH4 297 aaKnown RBP16.45■□□□□ 0.22
COL7A1-209ENST00000474432 OR11A1Q9GZK7 315 aa16.45■□□□□ 0.22
COL7A1-209ENST00000474432 SDR39U1Q9NRG7 319 aaPredicted RBP16.45■□□□□ 0.22
COL7A1-209ENST00000474432 SERINC1Q9NRX5 453 aa16.45■□□□□ 0.22
COL7A1-209ENST00000474432 CHRNA9Q9UGM1 479 aa16.45■□□□□ 0.22
COL7A1-209ENST00000474432 IGKV3D-15A0A087WSY6 115 aa16.44■□□□□ 0.22
COL7A1-209ENST00000474432 SULT2B1O00204 365 aa16.44■□□□□ 0.22
COL7A1-209ENST00000474432 KLF11O14901 512 aa16.44■□□□□ 0.22
COL7A1-209ENST00000474432 RAMP1O60894 148 aa16.44■□□□□ 0.22
COL7A1-209ENST00000474432 IDO1P14902 403 aa16.44■□□□□ 0.22
COL7A1-209ENST00000474432 IDH2P48735 452 aaKnown RBP16.44■□□□□ 0.22
COL7A1-209ENST00000474432 NR1H2P55055 460 aa16.44■□□□□ 0.22
COL7A1-209ENST00000474432 TXNL4AP83876 142 aaKnown RBP16.44■□□□□ 0.22
COL7A1-209ENST00000474432 LRRC74AQ0VAA2 488 aa16.44■□□□□ 0.22
COL7A1-209ENST00000474432 ITGADQ13349 1161 aa16.44■□□□□ 0.22
COL7A1-209ENST00000474432 P2RY6Q15077 328 aa16.44■□□□□ 0.22
COL7A1-209ENST00000474432 GTDC1Q4AE62 458 aa16.44■□□□□ 0.22
COL7A1-209ENST00000474432 Q6ZT83 130 aa16.44■□□□□ 0.22
COL7A1-209ENST00000474432 MTDHQ86UE4 582 aaKnown RBP16.44■□□□□ 0.22
COL7A1-209ENST00000474432 CIARTQ8N365 385 aaPredicted RBP16.44■□□□□ 0.22
COL7A1-209ENST00000474432 ARFGAP2Q8N6H7 521 aa16.44■□□□□ 0.22
COL7A1-209ENST00000474432 TRIML2Q8N7C3 387 aa16.44■□□□□ 0.22
COL7A1-209ENST00000474432 OR9I1Q8NGQ6 314 aa16.44■□□□□ 0.22
COL7A1-209ENST00000474432 ZNF563Q8TA94 476 aa16.44■□□□□ 0.22
COL7A1-209ENST00000474432 ARL8AQ96BM9 186 aa16.44■□□□□ 0.22
COL7A1-209ENST00000474432 DNAJA3Q96EY1 480 aa16.44■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 30 ms