RNA–Protein interactions for RNA: ENST00000462482.1

SKA3-204, Transcript of spindle and kinetochore associated complex subunit 3, humanhuman

TSL 2

Gene SKA3, Length 750 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3-204ENST00000462482 APH1AQ96BI3 265 aa13.61□□□□□ -0.23
SKA3-204ENST00000462482 REPIN1Q9BWE0 567 aaKnown RBP13.61□□□□□ -0.23
SKA3-204ENST00000462482 POLE3Q9NRF9 147 aa13.61□□□□□ -0.23
SKA3-204ENST00000462482 ADAM21Q9UKJ8 722 aa13.61□□□□□ -0.23
SKA3-204ENST00000462482 RNASET2O00584 256 aaKnown RBP13.6□□□□□ -0.23
SKA3-204ENST00000462482 CD5LO43866 347 aa13.6□□□□□ -0.23
SKA3-204ENST00000462482 FCMRO60667 390 aa13.6□□□□□ -0.23
SKA3-204ENST00000462482 RAMP1O60894 148 aa13.6□□□□□ -0.23
SKA3-204ENST00000462482 ADAM11O75078 769 aa13.6□□□□□ -0.23
SKA3-204ENST00000462482 NUDT17P0C025 328 aa13.6□□□□□ -0.23
SKA3-204ENST00000462482 COX5AP20674 150 aa13.6□□□□□ -0.23
SKA3-204ENST00000462482 IGHV1-2P23083 117 aa13.6□□□□□ -0.23
SKA3-204ENST00000462482 PTAFRP25105 342 aa13.6□□□□□ -0.23
SKA3-204ENST00000462482 NUDT6P53370 316 aa13.6□□□□□ -0.23
SKA3-204ENST00000462482 C21orf58P58505 322 aa13.6□□□□□ -0.23
SKA3-204ENST00000462482 DSCR9P59020 149 aa13.6□□□□□ -0.23
SKA3-204ENST00000462482 PDK3Q15120 406 aa13.6□□□□□ -0.23
SKA3-204ENST00000462482 ANXA8L1Q5VT79 327 aa13.6□□□□□ -0.23
SKA3-204ENST00000462482 OR4F3Q6IEY1 312 aa13.6□□□□□ -0.23
SKA3-204ENST00000462482 HMBOX1Q6NT76 420 aa13.6□□□□□ -0.23
SKA3-204ENST00000462482 PODNL1Q6PEZ8 512 aa13.6□□□□□ -0.23
SKA3-204ENST00000462482 SLC22A25Q6T423 547 aa13.6□□□□□ -0.23
SKA3-204ENST00000462482 ZC3HAV1Q7Z2W4 902 aaKnown RBP13.6□□□□□ -0.23
SKA3-204ENST00000462482 ATG4DQ86TL0 474 aaPredicted RBP13.6□□□□□ -0.23
SKA3-204ENST00000462482 DTX2Q86UW9 622 aa13.6□□□□□ -0.23
SKA3-204ENST00000462482 NUDCD3Q8IVD9 361 aa13.6□□□□□ -0.23
SKA3-204ENST00000462482 FBXL14Q8N1E6 418 aa13.6□□□□□ -0.23
SKA3-204ENST00000462482 PIGXQ8TBF5 258 aa13.6□□□□□ -0.23
SKA3-204ENST00000462482 XAGE5Q8WWM1 108 aa13.6□□□□□ -0.23
SKA3-204ENST00000462482 TRIM44Q96DX7 344 aaPredicted RBP13.6□□□□□ -0.23
SKA3-204ENST00000462482 ZIM3Q96PE6 472 aa13.6□□□□□ -0.23
SKA3-204ENST00000462482 ROPN1BQ9BZX4 212 aaPredicted RBP13.6□□□□□ -0.23
SKA3-204ENST00000462482 DPY30Q9C005 99 aa13.6□□□□□ -0.23
SKA3-204ENST00000462482 ZNF350Q9GZX5 532 aa13.6□□□□□ -0.23
SKA3-204ENST00000462482 OR51I1Q9H343 314 aa13.6□□□□□ -0.23
SKA3-204ENST00000462482 ROPN1Q9HAT0 212 aaPredicted RBP13.6□□□□□ -0.23
SKA3-204ENST00000462482 ASIC5Q9NY37 505 aa13.6□□□□□ -0.23
SKA3-204ENST00000462482 CHRNA9Q9UGM1 479 aa13.6□□□□□ -0.23
SKA3-204ENST00000462482 LGALS13Q9UHV8 139 aa13.6□□□□□ -0.23
SKA3-204ENST00000462482 ING1Q9UK53 422 aaPredicted RBP13.6□□□□□ -0.23
SKA3-204ENST00000462482 WDR45Q9Y484 360 aa13.6□□□□□ -0.23
SKA3-204ENST00000462482 IGKV3D-15A0A087WSY6 115 aa13.59□□□□□ -0.23
SKA3-204ENST00000462482 ESPNB1AK53 854 aa13.59□□□□□ -0.23
SKA3-204ENST00000462482 DNPH1O43598 174 aa13.59□□□□□ -0.23
SKA3-204ENST00000462482 SSX4O60224 188 aa13.59□□□□□ -0.23
SKA3-204ENST00000462482 DNAJA2O60884 412 aa13.59□□□□□ -0.23
SKA3-204ENST00000462482 MRPL33O75394 65 aaKnown RBP13.59□□□□□ -0.23
SKA3-204ENST00000462482 RAD51DO75771 328 aa13.59□□□□□ -0.23
SKA3-204ENST00000462482 UGT2B17O75795 530 aa13.59□□□□□ -0.23
SKA3-204ENST00000462482 BPGMP07738 259 aa13.59□□□□□ -0.23
SKA3-204ENST00000462482 DHRS4L1P0CG22 281 aa13.59□□□□□ -0.23
SKA3-204ENST00000462482 BMP4P12644 408 aa13.59□□□□□ -0.23
SKA3-204ENST00000462482 UQCRC2P22695 453 aa13.59□□□□□ -0.23
SKA3-204ENST00000462482 RYKP34925 604 aa13.59□□□□□ -0.23
SKA3-204ENST00000462482 CHI3L1P36222 383 aaPredicted RBP13.59□□□□□ -0.23
SKA3-204ENST00000462482 MAGEA8P43361 318 aa13.59□□□□□ -0.23
SKA3-204ENST00000462482 CLK1P49759 484 aaKnown RBP13.59□□□□□ -0.23
SKA3-204ENST00000462482 CHRNEQ04844 493 aa13.59□□□□□ -0.23
SKA3-204ENST00000462482 KRTAP1-1Q07627 177 aa13.59□□□□□ -0.23
SKA3-204ENST00000462482 OR7E24Q6IFN5 339 aa13.59□□□□□ -0.23
SKA3-204ENST00000462482 CLEC2AQ6UVW9 174 aa13.59□□□□□ -0.23
SKA3-204ENST00000462482 GRINAQ7Z429 371 aa13.59□□□□□ -0.23
SKA3-204ENST00000462482 CLECL1Q8IZS7 167 aa13.59□□□□□ -0.23
SKA3-204ENST00000462482 ARFGAP2Q8N6H7 521 aa13.59□□□□□ -0.23
SKA3-204ENST00000462482 ZNF433Q8N7K0 673 aaPredicted RBP13.59□□□□□ -0.23
SKA3-204ENST00000462482 ST6GALNAC1Q9NSC7 600 aaPredicted RBP13.59□□□□□ -0.23
SKA3-204ENST00000462482 ASB6Q9NWX5 421 aa13.59□□□□□ -0.23
SKA3-204ENST00000462482 TAS2R16Q9NYV7 291 aa13.59□□□□□ -0.23
SKA3-204ENST00000462482 GDF2Q9UK05 429 aaPredicted RBP13.59□□□□□ -0.23
SKA3-204ENST00000462482 HDGFL3Q9Y3E1 203 aa13.59□□□□□ -0.23
SKA3-204ENST00000462482 DSCAMO60469 2012 aa13.59□□□□□ -0.23
SKA3-204ENST00000462482 PRSS51A0A1B0GVH4 220 aa13.58□□□□□ -0.24
SKA3-204ENST00000462482 SHISA9B4DS77 424 aa13.58□□□□□ -0.24
SKA3-204ENST00000462482 KIAA0513O60268 411 aa13.58□□□□□ -0.24
SKA3-204ENST00000462482 PGM3O95394 542 aa13.58□□□□□ -0.24
SKA3-204ENST00000462482 CPSF4O95639 269 aaKnown RBP13.58□□□□□ -0.24
SKA3-204ENST00000462482 PMS2P2O95744 297 aa13.58□□□□□ -0.24
SKA3-204ENST00000462482 IGHV3-9P01782 118 aa13.58□□□□□ -0.24
SKA3-204ENST00000462482 GUSBP08236 651 aa13.58□□□□□ -0.24
SKA3-204ENST00000462482 MYZAPP0CAP1 466 aa13.58□□□□□ -0.24
SKA3-204ENST00000462482 OR12D1P0DN82 309 aa13.58□□□□□ -0.24
SKA3-204ENST00000462482 HTR3AP46098 478 aa13.58□□□□□ -0.24
SKA3-204ENST00000462482 KHKP50053 298 aa13.58□□□□□ -0.24
SKA3-204ENST00000462482 ANXA11P50995 505 aaKnown RBP13.58□□□□□ -0.24
SKA3-204ENST00000462482 ZNF83P51522 516 aa13.58□□□□□ -0.24
SKA3-204ENST00000462482 OR2B6P58173 313 aa13.58□□□□□ -0.24
SKA3-204ENST00000462482 GNA13Q14344 377 aa13.58□□□□□ -0.24
SKA3-204ENST00000462482 RAB35Q15286 201 aa13.58□□□□□ -0.24
SKA3-204ENST00000462482 PDCD2Q16342 344 aaPredicted RBP13.58□□□□□ -0.24
SKA3-204ENST00000462482 GPAT3Q53EU6 434 aa13.58□□□□□ -0.24
SKA3-204ENST00000462482 ABLIM2Q6H8Q1 611 aa13.58□□□□□ -0.24
SKA3-204ENST00000462482 TNFAIP8L2Q6P589 184 aaPredicted RBP13.58□□□□□ -0.24
SKA3-204ENST00000462482 SEZ6L2Q6UXD5 910 aa13.58□□□□□ -0.24
SKA3-204ENST00000462482 KIRREL3Q8IZU9 778 aa13.58□□□□□ -0.24
SKA3-204ENST00000462482 CLEC4FQ8N1N0 589 aa13.58□□□□□ -0.24
SKA3-204ENST00000462482 OR8J2Q8NGG1 315 aa13.58□□□□□ -0.24
SKA3-204ENST00000462482 OR52N5Q8NH56 324 aa13.58□□□□□ -0.24
SKA3-204ENST00000462482 MIPOL1Q8TD10 442 aa13.58□□□□□ -0.24
SKA3-204ENST00000462482 ZNF75CPQ92670 426 aaPredicted RBP13.58□□□□□ -0.24
SKA3-204ENST00000462482 DHRS9Q9BPW9 319 aa13.58□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 68.6 ms