RNA–Protein interactions for RNA: ENST00000451859.5

RFX3-209, Transcript of regulatory factor X3, human

TSL 3

Gene RFX3, Length 740 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
RFX3-209	ENST00000451859	MERTK	Q12866	999 aa		7.73	□□□□□ -1.17
RFX3-209	ENST00000451859	SELENBP1	Q13228	472 aa		7.73	□□□□□ -1.17
RFX3-209	ENST00000451859	ZNF141	Q15928	474 aa		7.73	□□□□□ -1.17
RFX3-209	ENST00000451859	SYPL1	Q16563	259 aa		7.73	□□□□□ -1.17
RFX3-209	ENST00000451859	DPY19L1	Q2PZI1	675 aa		7.73	□□□□□ -1.17
RFX3-209	ENST00000451859	SAXO2	Q658L1	398 aa		7.73	□□□□□ -1.17
RFX3-209	ENST00000451859	ATG16L1	Q676U5	607 aa		7.73	□□□□□ -1.17
RFX3-209	ENST00000451859	GTF2IRD2B	Q6EKJ0	949 aa		7.73	□□□□□ -1.17
RFX3-209	ENST00000451859	C3orf33	Q6P1S2	294 aa		7.73	□□□□□ -1.17
RFX3-209	ENST00000451859	STAC2	Q6ZMT1	411 aa		7.73	□□□□□ -1.17
RFX3-209	ENST00000451859	FRRS1	Q6ZNA5	592 aa		7.73	□□□□□ -1.17
RFX3-209	ENST00000451859	ZNF621	Q6ZSS3	439 aa		7.73	□□□□□ -1.17
RFX3-209	ENST00000451859	EIF3M	Q7L2H7	374 aa	Known RBP	7.73	□□□□□ -1.17
RFX3-209	ENST00000451859	NUFIP2	Q7Z417	695 aa	Known RBP	7.73	□□□□□ -1.17
RFX3-209	ENST00000451859	SPATA19	Q7Z5L4	167 aa		7.73	□□□□□ -1.17
RFX3-209	ENST00000451859	GTF2IRD2	Q86UP8	949 aa		7.73	□□□□□ -1.17
RFX3-209	ENST00000451859	CXorf67	Q86X51	503 aa	Predicted RBP	7.73	□□□□□ -1.17
RFX3-209	ENST00000451859	TUSC5	Q8IXB3	177 aa		7.73	□□□□□ -1.17
RFX3-209	ENST00000451859	ZNF619	Q8N2I2	560 aa		7.73	□□□□□ -1.17
RFX3-209	ENST00000451859	ANKFN1	Q8N957	763 aa		7.73	□□□□□ -1.17
RFX3-209	ENST00000451859	WFDC11	Q8NEX6	87 aa		7.73	□□□□□ -1.17
RFX3-209	ENST00000451859	ZNF563	Q8TA94	476 aa		7.73	□□□□□ -1.17
RFX3-209	ENST00000451859	RNF128	Q8TEB7	428 aa		7.73	□□□□□ -1.17
RFX3-209	ENST00000451859	NEURL3	Q96EH8	262 aa		7.73	□□□□□ -1.17
RFX3-209	ENST00000451859	MRGPRX4	Q96LA9	322 aa		7.73	□□□□□ -1.17
RFX3-209	ENST00000451859	CCDC115	Q96NT0	180 aa		7.73	□□□□□ -1.17
RFX3-209	ENST00000451859	OR52E6	Q96RD3	313 aa		7.73	□□□□□ -1.17
RFX3-209	ENST00000451859	KRTAP9-9	Q9BYP9	154 aa		7.73	□□□□□ -1.17
RFX3-209	ENST00000451859	KRTAP9-4	Q9BYQ2	154 aa		7.73	□□□□□ -1.17
RFX3-209	ENST00000451859	ACTR6	Q9GZN1	396 aa		7.73	□□□□□ -1.17
RFX3-209	ENST00000451859	NMUR2	Q9GZQ4	415 aa		7.73	□□□□□ -1.17
RFX3-209	ENST00000451859	LAT2	Q9GZY6	243 aa		7.73	□□□□□ -1.17
RFX3-209	ENST00000451859	PLSCR4	Q9NRQ2	329 aa		7.73	□□□□□ -1.17
RFX3-209	ENST00000451859	GLRX2	Q9NS18	164 aa		7.73	□□□□□ -1.17
RFX3-209	ENST00000451859	THAP1	Q9NVV9	213 aa		7.73	□□□□□ -1.17
RFX3-209	ENST00000451859	NIPBL	Q6KC79	2804 aa	eCLIP	7.72	□□□□□ -1.17
RFX3-209	ENST00000451859	MBD3L2B	A0A1B0GVZ6	204 aa	Predicted RBP	7.72	□□□□□ -1.17
RFX3-209	ENST00000451859	PRAMEF27	A3QJZ7	478 aa		7.72	□□□□□ -1.17
RFX3-209	ENST00000451859	HMGN4	O00479	90 aa		7.72	□□□□□ -1.17
RFX3-209	ENST00000451859	SNN	O75324	88 aa	Predicted RBP	7.72	□□□□□ -1.17
RFX3-209	ENST00000451859	AGR2	O95994	175 aa		7.72	□□□□□ -1.17
RFX3-209	ENST00000451859	PGR	P06401	933 aa		7.72	□□□□□ -1.17
RFX3-209	ENST00000451859	THBD	P07204	575 aa		7.72	□□□□□ -1.17
RFX3-209	ENST00000451859	FES	P07332	822 aa		7.72	□□□□□ -1.17
RFX3-209	ENST00000451859	PABPC4L	P0CB38	370 aa	Known RBP	7.72	□□□□□ -1.17
RFX3-209	ENST00000451859	CD53	P19397	219 aa		7.72	□□□□□ -1.17
RFX3-209	ENST00000451859	PGC	P20142	388 aa		7.72	□□□□□ -1.17
RFX3-209	ENST00000451859	ADH6	P28332	368 aa		7.72	□□□□□ -1.17
RFX3-209	ENST00000451859	RNPS1	Q15287	305 aa	Known RBP	7.72	□□□□□ -1.17
RFX3-209	ENST00000451859	SLC9B1	Q4ZJI4	515 aa		7.72	□□□□□ -1.17
RFX3-209	ENST00000451859	COX20	Q5RI15	118 aa		7.72	□□□□□ -1.17
RFX3-209	ENST00000451859	HEPHL1	Q6MZM0	1159 aa		7.72	□□□□□ -1.17
RFX3-209	ENST00000451859	OGFOD2	Q6N063	350 aa		7.72	□□□□□ -1.17
RFX3-209	ENST00000451859	TFAP2E	Q6VUC0	442 aa		7.72	□□□□□ -1.17
RFX3-209	ENST00000451859	BEND4	Q6ZU67	534 aa		7.72	□□□□□ -1.17
RFX3-209	ENST00000451859	PLEKHM3	Q6ZWE6	761 aa		7.72	□□□□□ -1.17
RFX3-209	ENST00000451859	TRIML2	Q8N7C3	387 aa		7.72	□□□□□ -1.17
RFX3-209	ENST00000451859	GOLGA6L1	Q8N7Z2	621 aa		7.72	□□□□□ -1.17
RFX3-209	ENST00000451859	MIPOL1	Q8TD10	442 aa		7.72	□□□□□ -1.17
RFX3-209	ENST00000451859	TMEM234	Q8WY98	164 aa		7.72	□□□□□ -1.17
RFX3-209	ENST00000451859	CNOT9	Q92600	299 aa	Known RBP	7.72	□□□□□ -1.17
RFX3-209	ENST00000451859	ARL8A	Q96BM9	186 aa		7.72	□□□□□ -1.17
RFX3-209	ENST00000451859	S100PBP	Q96BU1	408 aa		7.72	□□□□□ -1.17
RFX3-209	ENST00000451859	ZG16B	Q96DA0	208 aa		7.72	□□□□□ -1.17
RFX3-209	ENST00000451859	MBD6	Q96DN6	1003 aa		7.72	□□□□□ -1.17
RFX3-209	ENST00000451859	PERP	Q96FX8	193 aa		7.72	□□□□□ -1.17
RFX3-209	ENST00000451859	ZNF300	Q96RE9	604 aa	Predicted RBP	7.72	□□□□□ -1.17
RFX3-209	ENST00000451859	CCL19	Q99731	98 aa		7.72	□□□□□ -1.17
RFX3-209	ENST00000451859	MANSC1	Q9H8J5	431 aa		7.72	□□□□□ -1.17
RFX3-209	ENST00000451859	TMBIM4	Q9HC24	238 aa		7.72	□□□□□ -1.17
RFX3-209	ENST00000451859	FANCF	Q9NPI8	374 aa		7.72	□□□□□ -1.17
RFX3-209	ENST00000451859	CTPS2	Q9NRF8	586 aa		7.72	□□□□□ -1.17
RFX3-209	ENST00000451859	SERINC1	Q9NRX5	453 aa		7.72	□□□□□ -1.17
RFX3-209	ENST00000451859	KLHL13	Q9P2N7	655 aa		7.72	□□□□□ -1.17
RFX3-209	ENST00000451859	BTNL2	Q9UIR0	455 aa		7.72	□□□□□ -1.17
RFX3-209	ENST00000451859	GPR45	Q9Y5Y3	372 aa		7.72	□□□□□ -1.17
RFX3-209	ENST00000451859	NAV3	Q8IVL0	2385 aa		7.72	□□□□□ -1.17
RFX3-209	ENST00000451859	NF1	P21359	2839 aa		7.72	□□□□□ -1.17
RFX3-209	ENST00000451859	PLCE1	Q9P212	2302 aa		7.71	□□□□□ -1.18
RFX3-209	ENST00000451859	SULT2B1	O00204	365 aa		7.71	□□□□□ -1.18
RFX3-209	ENST00000451859	RFXANK	O14593	260 aa		7.71	□□□□□ -1.18
RFX3-209	ENST00000451859	AP3D1	O14617	1153 aa		7.71	□□□□□ -1.18
RFX3-209	ENST00000451859	SMAD9	O15198	467 aa	Known RBP	7.71	□□□□□ -1.18
RFX3-209	ENST00000451859	SMPD2	O60906	423 aa		7.71	□□□□□ -1.18
RFX3-209	ENST00000451859	PRKD3	O94806	890 aa		7.71	□□□□□ -1.18
RFX3-209	ENST00000451859	ANP32D	O95626	131 aa		7.71	□□□□□ -1.18
RFX3-209	ENST00000451859	PLAU	P00749	431 aa		7.71	□□□□□ -1.18
RFX3-209	ENST00000451859	CHRM4	P08173	479 aa		7.71	□□□□□ -1.18
RFX3-209	ENST00000451859	NR2F1	P10589	423 aa		7.71	□□□□□ -1.18
RFX3-209	ENST00000451859	IL32	P24001	234 aa		7.71	□□□□□ -1.18
RFX3-209	ENST00000451859	PGM1	P36871	562 aa		7.71	□□□□□ -1.18
RFX3-209	ENST00000451859	IDH2	P48735	452 aa	Known RBP	7.71	□□□□□ -1.18
RFX3-209	ENST00000451859	DIO1	P49895	249 aa		7.71	□□□□□ -1.18
RFX3-209	ENST00000451859	ANXA11	P50995	505 aa	Known RBP	7.71	□□□□□ -1.18
RFX3-209	ENST00000451859	NKX6-1	P78426	367 aa	Predicted RBP	7.71	□□□□□ -1.18
RFX3-209	ENST00000451859	KCNJ10	P78508	379 aa		7.71	□□□□□ -1.18
RFX3-209	ENST00000451859	RASGEF1B	Q0VAM2	473 aa		7.71	□□□□□ -1.18
RFX3-209	ENST00000451859	DOC2B	Q14184	412 aa		7.71	□□□□□ -1.18
RFX3-209	ENST00000451859	CAPRIN1	Q14444	709 aa	Known RBP	7.71	□□□□□ -1.18
RFX3-209	ENST00000451859	GTDC1	Q4AE62	458 aa		7.71	□□□□□ -1.18

Retrieved 100 of 20,778 RNA–protein pairs in 44.2 ms