RNA–Protein interactions for RNA: ENST00000447578.6

VPS29-202, Transcript of VPS29, retromer complex component, humanhuman

TSL 1 (best) BASIC

Gene VPS29, Length 996 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-202ENST00000447578 UGT1A7Q9HAW7 530 aa3.56□□□□□ -1.84
VPS29-202ENST00000447578 UGT1A10Q9HAW8 530 aa3.56□□□□□ -1.84
VPS29-202ENST00000447578 UGT1A8Q9HAW9 530 aa3.56□□□□□ -1.84
VPS29-202ENST00000447578 MAN2C1Q9NTJ4 1040 aa3.56□□□□□ -1.84
VPS29-202ENST00000447578 ZFP57Q9NU63 452 aa3.56□□□□□ -1.84
VPS29-202ENST00000447578 MED17Q9NVC6 651 aa3.56□□□□□ -1.84
VPS29-202ENST00000447578 DCAF16Q9NXF7 216 aa3.56□□□□□ -1.84
VPS29-202ENST00000447578 OTOFQ9HC10 1997 aa3.56□□□□□ -1.84
VPS29-202ENST00000447578 ZNFX1Q9P2E3 1918 aaKnown RBP3.55□□□□□ -1.84
VPS29-202ENST00000447578 MBLAC1A4D2B0 266 aaPredicted RBP3.55□□□□□ -1.84
VPS29-202ENST00000447578 MSGN1A6NI15 193 aa3.55□□□□□ -1.84
VPS29-202ENST00000447578 FAM159BA6NKW6 160 aa3.55□□□□□ -1.84
VPS29-202ENST00000447578 SHISA7A6NL88 538 aa3.55□□□□□ -1.84
VPS29-202ENST00000447578 HACD1B0YJ81 288 aa3.55□□□□□ -1.84
VPS29-202ENST00000447578 ZNF487B1APH4 448 aa3.55□□□□□ -1.84
VPS29-202ENST00000447578 LMO7DNF2Z398 122 aa3.55□□□□□ -1.84
VPS29-202ENST00000447578 I3L4J1 428 aa3.55□□□□□ -1.84
VPS29-202ENST00000447578 M0QZ92 97 aa3.55□□□□□ -1.84
VPS29-202ENST00000447578 HAS3O00219 553 aa3.55□□□□□ -1.84
VPS29-202ENST00000447578 MFSD11O43934 449 aa3.55□□□□□ -1.84
VPS29-202ENST00000447578 KIAA0513O60268 411 aa3.55□□□□□ -1.84
VPS29-202ENST00000447578 MTX2O75431 263 aa3.55□□□□□ -1.84
VPS29-202ENST00000447578 TRMUO75648 421 aaKnown RBP3.55□□□□□ -1.84
VPS29-202ENST00000447578 OR4F21O95013 312 aa3.55□□□□□ -1.84
VPS29-202ENST00000447578 FGF19O95750 216 aa3.55□□□□□ -1.84
VPS29-202ENST00000447578 C1QAP02745 245 aa3.55□□□□□ -1.84
VPS29-202ENST00000447578 RPSAP08865 295 aaKnown RBP3.55□□□□□ -1.84
VPS29-202ENST00000447578 CLUP10909 449 aa3.55□□□□□ -1.84
VPS29-202ENST00000447578 KCNE1P15382 129 aa3.55□□□□□ -1.84
VPS29-202ENST00000447578 CYP2B6P20813 491 aa3.55□□□□□ -1.84
VPS29-202ENST00000447578 WARSP23381 471 aaKnown RBP3.55□□□□□ -1.84
VPS29-202ENST00000447578 FDFT1P37268 417 aa3.55□□□□□ -1.84
VPS29-202ENST00000447578 GRIA1P42261 906 aa3.55□□□□□ -1.84
VPS29-202ENST00000447578 MAGEA6P43360 314 aa3.55□□□□□ -1.84
VPS29-202ENST00000447578 RPL34P49207 117 aaKnown RBP3.55□□□□□ -1.84
VPS29-202ENST00000447578 SERPINB9P50453 376 aa3.55□□□□□ -1.84
VPS29-202ENST00000447578 CRYBB1P53674 252 aaPredicted RBP3.55□□□□□ -1.84
VPS29-202ENST00000447578 XGP55808 180 aa3.55□□□□□ -1.84
VPS29-202ENST00000447578 MAP3K7CLP57077 242 aa3.55□□□□□ -1.84
VPS29-202ENST00000447578 KRTAP10-3P60369 221 aa3.55□□□□□ -1.84
VPS29-202ENST00000447578 SARNPP82979 210 aaKnown RBP3.55□□□□□ -1.84
VPS29-202ENST00000447578 TRIP10Q15642 601 aa3.55□□□□□ -1.84
VPS29-202ENST00000447578 CHI3L2Q15782 390 aa3.55□□□□□ -1.84
VPS29-202ENST00000447578 CCL14Q16627 93 aa3.55□□□□□ -1.84
VPS29-202ENST00000447578 PARP6Q2NL67 630 aa3.55□□□□□ -1.84
VPS29-202ENST00000447578 ZNF528Q3MIS6 628 aa3.55□□□□□ -1.84
VPS29-202ENST00000447578 SLC25A52Q3SY17 297 aa3.55□□□□□ -1.84
VPS29-202ENST00000447578 GTDC1Q4AE62 458 aa3.55□□□□□ -1.84
VPS29-202ENST00000447578 XKR4Q5GH76 650 aa3.55□□□□□ -1.84
VPS29-202ENST00000447578 SPANXN4Q5MJ08 99 aa3.55□□□□□ -1.84
VPS29-202ENST00000447578 WLSQ5T9L3 541 aa3.55□□□□□ -1.84
VPS29-202ENST00000447578 DDI2Q5TDH0 399 aa3.55□□□□□ -1.84
VPS29-202ENST00000447578 BSPRYQ5W0U4 402 aa3.55□□□□□ -1.84
VPS29-202ENST00000447578 TWF2Q6IBS0 349 aaKnown RBP3.55□□□□□ -1.84
VPS29-202ENST00000447578 SH2D5Q6ZV89 423 aa3.55□□□□□ -1.84
VPS29-202ENST00000447578 BZW1Q7L1Q6 419 aaKnown RBP3.55□□□□□ -1.84
VPS29-202ENST00000447578 ARCQ7LC44 396 aa3.55□□□□□ -1.84
VPS29-202ENST00000447578 PID1Q7Z2X4 250 aa3.55□□□□□ -1.84
VPS29-202ENST00000447578 GOLGA7Q7Z5G4 137 aa3.55□□□□□ -1.84
VPS29-202ENST00000447578 SLC22A16Q86VW1 577 aa3.55□□□□□ -1.84
VPS29-202ENST00000447578 GRAMD2AQ8IUY3 354 aa3.55□□□□□ -1.84
VPS29-202ENST00000447578 ZDHHC21Q8IVQ6 265 aa3.55□□□□□ -1.84
VPS29-202ENST00000447578 LINC00518Q8N0U6 118 aa3.55□□□□□ -1.84
VPS29-202ENST00000447578 OR52M1Q8NGK5 317 aa3.55□□□□□ -1.84
VPS29-202ENST00000447578 RNF139Q8WU17 664 aa3.55□□□□□ -1.84
VPS29-202ENST00000447578 CDKL2Q92772 493 aa3.55□□□□□ -1.84
VPS29-202ENST00000447578 MCHR2Q969V1 340 aa3.55□□□□□ -1.84
VPS29-202ENST00000447578 LRRC39Q96DD0 335 aa3.55□□□□□ -1.84
VPS29-202ENST00000447578 SENP5Q96HI0 755 aaPredicted RBP3.55□□□□□ -1.84
VPS29-202ENST00000447578 C2orf48Q96LS8 159 aa3.55□□□□□ -1.84
VPS29-202ENST00000447578 OLFM3Q96PB7 478 aa3.55□□□□□ -1.84
VPS29-202ENST00000447578 NPY6RQ99463 290 aa3.55□□□□□ -1.84
VPS29-202ENST00000447578 LGMNQ99538 433 aa3.55□□□□□ -1.84
VPS29-202ENST00000447578 EBNA1BP2Q99848 306 aaKnown RBP3.55□□□□□ -1.84
VPS29-202ENST00000447578 SYT15Q9BQS2 421 aa3.55□□□□□ -1.84
VPS29-202ENST00000447578 PAPOLGQ9BWT3 736 aaKnown RBP3.55□□□□□ -1.84
VPS29-202ENST00000447578 RAB11FIP5Q9BXF6 653 aa3.55□□□□□ -1.84
VPS29-202ENST00000447578 DUSP16Q9BY84 665 aa3.55□□□□□ -1.84
VPS29-202ENST00000447578 NLNQ9BYT8 704 aa3.55□□□□□ -1.84
VPS29-202ENST00000447578 ULBP1Q9BZM6 244 aa3.55□□□□□ -1.84
VPS29-202ENST00000447578 POLR1EQ9GZS1 481 aaKnown RBP3.55□□□□□ -1.84
VPS29-202ENST00000447578 CXXC4Q9H2H0 198 aa3.55□□□□□ -1.84
VPS29-202ENST00000447578 GDAP2Q9NXN4 497 aa3.55□□□□□ -1.84
VPS29-202ENST00000447578 KLHL8Q9P2G9 620 aaPredicted RBP3.55□□□□□ -1.84
VPS29-202ENST00000447578 RCOR3Q9P2K3 495 aaPredicted RBP3.55□□□□□ -1.84
VPS29-202ENST00000447578 P2RX2Q9UBL9 471 aa3.55□□□□□ -1.84
VPS29-202ENST00000447578 CHRNA9Q9UGM1 479 aa3.55□□□□□ -1.84
VPS29-202ENST00000447578 ATP6V1HQ9UI12 483 aa3.55□□□□□ -1.84
VPS29-202ENST00000447578 ZNF490Q9ULM2 529 aaPredicted RBP3.55□□□□□ -1.84
VPS29-202ENST00000447578 STAP1Q9ULZ2 295 aa3.55□□□□□ -1.84
VPS29-202ENST00000447578 FOXJ3Q9UPW0 622 aa3.55□□□□□ -1.84
VPS29-202ENST00000447578 MRPS7Q9Y2R9 242 aaKnown RBP3.55□□□□□ -1.84
VPS29-202ENST00000447578 PLLPQ9Y342 182 aa3.55□□□□□ -1.84
VPS29-202ENST00000447578 L3MBTL1Q9Y468 752 aa3.55□□□□□ -1.84
VPS29-202ENST00000447578 NOTCH2Q04721 2471 aa3.55□□□□□ -1.84
VPS29-202ENST00000447578 A0A1B0GU03 582 aa3.54□□□□□ -1.84
VPS29-202ENST00000447578 FAM172BPA6NC97 362 aa3.54□□□□□ -1.84
VPS29-202ENST00000447578 SMIM1B2RUZ4 78 aa3.54□□□□□ -1.84
VPS29-202ENST00000447578 KCNK1O00180 336 aa3.54□□□□□ -1.84
VPS29-202ENST00000447578 SH2D1BO14796 132 aa3.54□□□□□ -1.84
Retrieved 100 of 20,778 RNA–protein pairs in 151.6 ms