RNA–Protein interactions for RNA: ENST00000445503.5

MSH6-204, Transcript of mutS homolog 6, humanhuman

TSL 1 (best)

Gene MSH6, Length 4,158 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6-204ENST00000445503 CNN2Q99439 309 aaKnown RBP11.01□□□□□ -0.65
MSH6-204ENST00000445503 GTPBP2Q9BX10 602 aaKnown RBP11.01□□□□□ -0.65
MSH6-204ENST00000445503 ENKD1Q9H0I2 346 aa11.01□□□□□ -0.65
MSH6-204ENST00000445503 GPN1Q9HCN4 374 aaPredicted RBP11.01□□□□□ -0.65
MSH6-204ENST00000445503 HRASLS2Q9NWW9 162 aa11.01□□□□□ -0.65
MSH6-204ENST00000445503 IL20Q9NYY1 176 aa11.01□□□□□ -0.65
MSH6-204ENST00000445503 HEBP2Q9Y5Z4 205 aa11.01□□□□□ -0.65
MSH6-204ENST00000445503 CENPVL1A0A0U1RR11 272 aa11.01□□□□□ -0.65
MSH6-204ENST00000445503 GXYLT2A0PJZ3 443 aa11.01□□□□□ -0.65
MSH6-204ENST00000445503 NARSO43776 548 aaKnown RBP11.01□□□□□ -0.65
MSH6-204ENST00000445503 PRKNO60260 465 aaPredicted RBP11.01□□□□□ -0.65
MSH6-204ENST00000445503 TRIM3O75382 744 aaPredicted RBP11.01□□□□□ -0.65
MSH6-204ENST00000445503 SBK2P0C263 348 aa11.01□□□□□ -0.65
MSH6-204ENST00000445503 CPMP14384 443 aa11.01□□□□□ -0.65
MSH6-204ENST00000445503 MAZP56270 477 aaKnown RBP11.01□□□□□ -0.65
MSH6-204ENST00000445503 FUT5Q11128 374 aa11.01□□□□□ -0.65
MSH6-204ENST00000445503 ILF3Q12906 894 aaKnown RBP eCLIP11.01□□□□□ -0.651e-6■■■□□ 16.2
MSH6-204ENST00000445503 CRIPAKQ8N1N5 446 aa11.01□□□□□ -0.65
MSH6-204ENST00000445503 HERVK_113Q902F9 699 aa11.01□□□□□ -0.65
MSH6-204ENST00000445503 NKD1Q969G9 470 aa11.01□□□□□ -0.65
MSH6-204ENST00000445503 GAL3ST3Q96A11 431 aa11.01□□□□□ -0.65
MSH6-204ENST00000445503 S100A16Q96FQ6 103 aaKnown RBP11.01□□□□□ -0.65
MSH6-204ENST00000445503 ORAI3Q9BRQ5 295 aa11.01□□□□□ -0.65
MSH6-204ENST00000445503 APOOQ9BUR5 198 aa11.01□□□□□ -0.65
MSH6-204ENST00000445503 MED17Q9NVC6 651 aa11.01□□□□□ -0.65
MSH6-204ENST00000445503 TBX21Q9UL17 535 aa11.01□□□□□ -0.65
MSH6-204ENST00000445503 MAB21L2Q9Y586 359 aa11.01□□□□□ -0.65
MSH6-204ENST00000445503 TRPM7Q96QT4 1865 aa11.01□□□□□ -0.65
MSH6-204ENST00000445503 A0A1W2PPV9 198 aa11.01□□□□□ -0.65
MSH6-204ENST00000445503 SGK494L7N484 410 aa11.01□□□□□ -0.65
MSH6-204ENST00000445503 NUPL2O15504 423 aaKnown RBP11.01□□□□□ -0.65
MSH6-204ENST00000445503 TBX6O95947 436 aaPredicted RBP11.01□□□□□ -0.65
MSH6-204ENST00000445503 TIMP1P01033 207 aa11.01□□□□□ -0.65
MSH6-204ENST00000445503 HNRNPA1P09651 372 aaKnown RBP eCLIP11.01□□□□□ -0.65
MSH6-204ENST00000445503 RBMS1P29558 406 aaKnown RBP11.01□□□□□ -0.65
MSH6-204ENST00000445503 PTGS2P35354 604 aa11.01□□□□□ -0.65
MSH6-204ENST00000445503 GDNFP39905 211 aa11.01□□□□□ -0.65
MSH6-204ENST00000445503 MAGEB1P43366 347 aa11.01□□□□□ -0.65
MSH6-204ENST00000445503 RPS15AP62244 130 aaKnown RBP11.01□□□□□ -0.65
MSH6-204ENST00000445503 ENPP2Q13822 863 aa11.01□□□□□ -0.65
MSH6-204ENST00000445503 FAAP20Q6NZ36 180 aa11.01□□□□□ -0.65
MSH6-204ENST00000445503 THSD4Q6ZMP0 1018 aa11.01□□□□□ -0.65
MSH6-204ENST00000445503 TMEM91Q6ZNR0 172 aa11.01□□□□□ -0.65
MSH6-204ENST00000445503 ANKRD33Q7Z3H0 272 aa11.01□□□□□ -0.65
MSH6-204ENST00000445503 TAF8Q7Z7C8 310 aa11.01□□□□□ -0.65
MSH6-204ENST00000445503 CCL4L1Q8NHW4 92 aa11.01□□□□□ -0.65
MSH6-204ENST00000445503 FCAMRQ8WWV6 532 aa11.01□□□□□ -0.65
MSH6-204ENST00000445503 NXPE2Q96DL1 559 aa11.01□□□□□ -0.65
MSH6-204ENST00000445503 ELMOD3Q96FG2 381 aa11.01□□□□□ -0.65
MSH6-204ENST00000445503 FGF22Q9HCT0 170 aa11.01□□□□□ -0.65
MSH6-204ENST00000445503 URB1O60287 2271 aaKnown RBP11□□□□□ -0.65
MSH6-204ENST00000445503 ELOA3DA6NLF2 546 aaPredicted RBP11□□□□□ -0.65
MSH6-204ENST00000445503 TFP02787 698 aa11□□□□□ -0.65
MSH6-204ENST00000445503 TP53P04637 393 aaPredicted RBP11□□□□□ -0.65
MSH6-204ENST00000445503 PTHLHP12272 177 aa11□□□□□ -0.65
MSH6-204ENST00000445503 ITGB8P26012 769 aa11□□□□□ -0.65
MSH6-204ENST00000445503 PKLRP30613 574 aa11□□□□□ -0.65
MSH6-204ENST00000445503 C1orf61Q13536 156 aa11□□□□□ -0.65
MSH6-204ENST00000445503 MAPK14Q16539 360 aa11□□□□□ -0.65
MSH6-204ENST00000445503 ELOA3BQ3SY89 546 aa11□□□□□ -0.65
MSH6-204ENST00000445503 ESCO2Q56NI9 601 aa11□□□□□ -0.65
MSH6-204ENST00000445503 CD300LDQ6UXZ3 194 aa11□□□□□ -0.65
MSH6-204ENST00000445503 ZNF782Q6ZMW2 699 aaPredicted RBP11□□□□□ -0.65
MSH6-204ENST00000445503 POGLUT1Q8NBL1 392 aa11□□□□□ -0.65
MSH6-204ENST00000445503 ELOA3Q8NG57 546 aa11□□□□□ -0.65
MSH6-204ENST00000445503 RSPRY1Q96DX4 576 aa11□□□□□ -0.65
MSH6-204ENST00000445503 MAP6Q96JE9 813 aa11□□□□□ -0.65
MSH6-204ENST00000445503 AUNIPQ9H7T9 357 aa11□□□□□ -0.65
MSH6-204ENST00000445503 ISYNA1Q9NPH2 558 aa11□□□□□ -0.65
MSH6-204ENST00000445503 ACAD8Q9UKU7 415 aa11□□□□□ -0.65
MSH6-204ENST00000445503 TRABD2BA6NFA1 517 aa11□□□□□ -0.65
MSH6-204ENST00000445503 FAM25EA8MYX2 175 aa11□□□□□ -0.65
MSH6-204ENST00000445503 ITGA10O75578 1167 aa11□□□□□ -0.65
MSH6-204ENST00000445503 OR7A10O76100 309 aa11□□□□□ -0.65
MSH6-204ENST00000445503 CSTAP01040 98 aa11□□□□□ -0.65
MSH6-204ENST00000445503 MYOGP15173 224 aa11□□□□□ -0.65
MSH6-204ENST00000445503 VEGFCP49767 419 aa11□□□□□ -0.65
MSH6-204ENST00000445503 ACTC1P68032 377 aa11□□□□□ -0.65
MSH6-204ENST00000445503 ACTA1P68133 377 aa11□□□□□ -0.65
MSH6-204ENST00000445503 ERV3-1Q14264 604 aa11□□□□□ -0.65
MSH6-204ENST00000445503 GALEQ14376 348 aa11□□□□□ -0.65
MSH6-204ENST00000445503 TANGO2Q6ICL3 276 aa11□□□□□ -0.65
MSH6-204ENST00000445503 APOBEC4Q8WW27 367 aaKnown RBP11□□□□□ -0.65
MSH6-204ENST00000445503 DHRS1Q96LJ7 313 aa11□□□□□ -0.65
MSH6-204ENST00000445503 MARVELD1Q9BSK0 173 aa11□□□□□ -0.65
MSH6-204ENST00000445503 PITHD1Q9GZP4 211 aaPredicted RBP11□□□□□ -0.65
MSH6-204ENST00000445503 SOHLH2Q9NX45 425 aa11□□□□□ -0.65
MSH6-204ENST00000445503 SF3B6Q9Y3B4 125 aaKnown RBP11□□□□□ -0.65
MSH6-204ENST00000445503 LOC100509620A0A075B734 347 aa11□□□□□ -0.65
MSH6-204ENST00000445503 H0Y8X5 98 aa11□□□□□ -0.65
MSH6-204ENST00000445503 LILRB3O75022 631 aa11□□□□□ -0.65
MSH6-204ENST00000445503 KDM4BO94953 1096 aa11□□□□□ -0.65
MSH6-204ENST00000445503 GJA4P35212 333 aa11□□□□□ -0.65
MSH6-204ENST00000445503 C4orf46Q504U0 113 aa11□□□□□ -0.65
MSH6-204ENST00000445503 TMED4Q7Z7H5 227 aa11□□□□□ -0.65
MSH6-204ENST00000445503 SLC35F2Q8IXU6 374 aa11□□□□□ -0.65
MSH6-204ENST00000445503 MFSD9Q8NBP5 474 aa11□□□□□ -0.65
MSH6-204ENST00000445503 SPPL3Q8TCT6 385 aa11□□□□□ -0.65
MSH6-204ENST00000445503 FOXN4Q96NZ1 517 aa11□□□□□ -0.65
MSH6-204ENST00000445503 NMNAT3Q96T66 252 aa11□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 31.8 ms