RNA–Protein interactions for RNA: ENST00000440118.1

SHROOM1-204, Transcript of shroom family member 1, humanhuman

TSL 2

Gene SHROOM1, Length 1,080 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM1-204ENST00000440118 USH1CQ9Y6N9 552 aa17.69■□□□□ 0.42
SHROOM1-204ENST00000440118 DSCAMO60469 2012 aa17.69■□□□□ 0.42
SHROOM1-204ENST00000440118 SETD2Q9BYW2 2564 aaPredicted RBP17.68■□□□□ 0.42
SHROOM1-204ENST00000440118 ETV2O00321 342 aaPredicted RBP17.68■□□□□ 0.42
SHROOM1-204ENST00000440118 POLR3GO15318 223 aaPredicted RBP17.68■□□□□ 0.42
SHROOM1-204ENST00000440118 FESP07332 822 aa17.68■□□□□ 0.42
SHROOM1-204ENST00000440118 YES1P07947 543 aa17.68■□□□□ 0.42
SHROOM1-204ENST00000440118 KLK2P20151 261 aa17.68■□□□□ 0.42
SHROOM1-204ENST00000440118 APOBEC1P41238 236 aaKnown RBP17.68■□□□□ 0.42
SHROOM1-204ENST00000440118 DIO1P49895 249 aa17.68■□□□□ 0.42
SHROOM1-204ENST00000440118 RIPPLY3P57055 190 aa17.68■□□□□ 0.42
SHROOM1-204ENST00000440118 RASGEF1BQ0VAM2 473 aa17.68■□□□□ 0.42
SHROOM1-204ENST00000440118 COX20Q5RI15 118 aa17.68■□□□□ 0.42
SHROOM1-204ENST00000440118 TFAP2EQ6VUC0 442 aa17.68■□□□□ 0.42
SHROOM1-204ENST00000440118 LRRC74BQ6ZQY2 392 aa17.68■□□□□ 0.42
SHROOM1-204ENST00000440118 NUFIP2Q7Z417 695 aaKnown RBP17.68■□□□□ 0.42
SHROOM1-204ENST00000440118 MAVSQ7Z434 540 aa17.68■□□□□ 0.42
SHROOM1-204ENST00000440118 CXorf67Q86X51 503 aaPredicted RBP17.68■□□□□ 0.42
SHROOM1-204ENST00000440118 CMIPQ8IY22 773 aa17.68■□□□□ 0.42
SHROOM1-204ENST00000440118 PEX5LQ8IYB4 626 aa17.68■□□□□ 0.42
SHROOM1-204ENST00000440118 STEAP2Q8NFT2 490 aa17.68■□□□□ 0.42
SHROOM1-204ENST00000440118 ZNF524Q96C55 264 aa17.68■□□□□ 0.42
SHROOM1-204ENST00000440118 OR52B2Q96RD2 323 aa17.68■□□□□ 0.42
SHROOM1-204ENST00000440118 CCL19Q99731 98 aa17.68■□□□□ 0.42
SHROOM1-204ENST00000440118 EXOSC3Q9NQT5 275 aaKnown RBP17.68■□□□□ 0.42
SHROOM1-204ENST00000440118 BEX4Q9NWD9 120 aaPredicted RBP17.68■□□□□ 0.42
SHROOM1-204ENST00000440118 CHRNA9Q9UGM1 479 aa17.68■□□□□ 0.42
SHROOM1-204ENST00000440118 GPR52Q9Y2T5 361 aa17.68■□□□□ 0.42
SHROOM1-204ENST00000440118 CLDN24A6NM45 220 aa17.67■□□□□ 0.42
SHROOM1-204ENST00000440118 SIAH2O43255 324 aa17.67■□□□□ 0.42
SHROOM1-204ENST00000440118 BCAS1O75363 584 aaPredicted RBP17.67■□□□□ 0.42
SHROOM1-204ENST00000440118 C1QCP02747 245 aa17.67■□□□□ 0.42
SHROOM1-204ENST00000440118 CHRM4P08173 479 aa17.67■□□□□ 0.42
SHROOM1-204ENST00000440118 CCNA2P20248 432 aa17.67■□□□□ 0.42
SHROOM1-204ENST00000440118 FPR1P21462 350 aa17.67■□□□□ 0.42
SHROOM1-204ENST00000440118 IDH2P48735 452 aaKnown RBP17.67■□□□□ 0.42
SHROOM1-204ENST00000440118 POLR2JP52435 117 aaKnown RBP17.67■□□□□ 0.42
SHROOM1-204ENST00000440118 OR9I1Q8NGQ6 314 aa17.67■□□□□ 0.42
SHROOM1-204ENST00000440118 KISS1RQ969F8 398 aaPredicted RBP17.67■□□□□ 0.42
SHROOM1-204ENST00000440118 ZG16BQ96DA0 208 aa17.67■□□□□ 0.42
SHROOM1-204ENST00000440118 CTPS2Q9NRF8 586 aa17.67■□□□□ 0.42
SHROOM1-204ENST00000440118 SDR39U1Q9NRG7 319 aaPredicted RBP17.67■□□□□ 0.42
SHROOM1-204ENST00000440118 CALML5Q9NZT1 146 aa17.67■□□□□ 0.42
SHROOM1-204ENST00000440118 EMC3Q9P0I2 261 aa17.67■□□□□ 0.42
SHROOM1-204ENST00000440118 ARID1AO14497 2285 aa17.67■□□□□ 0.42
SHROOM1-204ENST00000440118 ROS1P08922 2347 aa17.66■□□□□ 0.42
SHROOM1-204ENST00000440118 ACANP16112 2415 aa17.66■□□□□ 0.42
SHROOM1-204ENST00000440118 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP17.66■□□□□ 0.42
SHROOM1-204ENST00000440118 PRAMEF27A3QJZ7 478 aa17.66■□□□□ 0.42
SHROOM1-204ENST00000440118 AGAP5A6NIR3 686 aa17.66■□□□□ 0.42
SHROOM1-204ENST00000440118 SMAD9O15198 467 aaKnown RBP17.66■□□□□ 0.42
SHROOM1-204ENST00000440118 DNAJA2O60884 412 aa17.66■□□□□ 0.42
SHROOM1-204ENST00000440118 SMPD2O60906 423 aa17.66■□□□□ 0.42
SHROOM1-204ENST00000440118 DBIP07108 87 aaKnown RBP17.66■□□□□ 0.42
SHROOM1-204ENST00000440118 CD53P19397 219 aa17.66■□□□□ 0.42
SHROOM1-204ENST00000440118 PSMB1P20618 241 aaKnown RBP17.66■□□□□ 0.42
SHROOM1-204ENST00000440118 HTR3AP46098 478 aa17.66■□□□□ 0.42
SHROOM1-204ENST00000440118 NR1H2P55055 460 aa17.66■□□□□ 0.42
SHROOM1-204ENST00000440118 FOXD4Q12950 439 aaPredicted RBP17.66■□□□□ 0.42
SHROOM1-204ENST00000440118 CAPRIN1Q14444 709 aaKnown RBP17.66■□□□□ 0.42
SHROOM1-204ENST00000440118 C20orf204Q6ZNR8 217 aa17.66■□□□□ 0.42
SHROOM1-204ENST00000440118 TMPPEQ6ZT21 453 aa17.66■□□□□ 0.42
SHROOM1-204ENST00000440118 MSANTD1Q6ZTZ1 278 aa17.66■□□□□ 0.42
SHROOM1-204ENST00000440118 P3H2Q8IVL5 708 aa17.66■□□□□ 0.42
SHROOM1-204ENST00000440118 ZNF100Q8IYN0 542 aa17.66■□□□□ 0.42
SHROOM1-204ENST00000440118 CNOT9Q92600 299 aaKnown RBP17.66■□□□□ 0.42
SHROOM1-204ENST00000440118 PIGTQ969N2 578 aa17.66■□□□□ 0.42
SHROOM1-204ENST00000440118 S100PBPQ96BU1 408 aa17.66■□□□□ 0.42
SHROOM1-204ENST00000440118 DNAJA3Q96EY1 480 aa17.66■□□□□ 0.42
SHROOM1-204ENST00000440118 ATP6V1G3Q96LB4 118 aa17.66■□□□□ 0.42
SHROOM1-204ENST00000440118 HS3ST6Q96QI5 342 aa17.66■□□□□ 0.42
SHROOM1-204ENST00000440118 PSD2Q9BQI7 771 aa17.66■□□□□ 0.42
SHROOM1-204ENST00000440118 CCDC106Q9BWC9 280 aa17.66■□□□□ 0.42
SHROOM1-204ENST00000440118 HDHD5Q9BXW7 423 aa17.66■□□□□ 0.42
SHROOM1-204ENST00000440118 SLC38A1Q9H2H9 487 aa17.66■□□□□ 0.42
SHROOM1-204ENST00000440118 MTHFD2LQ9H903 347 aaPredicted RBP17.66■□□□□ 0.42
SHROOM1-204ENST00000440118 TCF7L2Q9NQB0 619 aa17.66■□□□□ 0.42
SHROOM1-204ENST00000440118 CYTIPO60759 359 aa17.65■□□□□ 0.42
SHROOM1-204ENST00000440118 BCHEP06276 602 aa17.65■□□□□ 0.42
SHROOM1-204ENST00000440118 MAGEA8P43361 318 aa17.65■□□□□ 0.42
SHROOM1-204ENST00000440118 CRISP3P54108 245 aa17.65■□□□□ 0.42
SHROOM1-204ENST00000440118 DSTNP60981 165 aa17.65■□□□□ 0.42
SHROOM1-204ENST00000440118 ACKR1Q16570 336 aa17.65■□□□□ 0.42
SHROOM1-204ENST00000440118 LIN52Q52LA3 116 aa17.65■□□□□ 0.42
SHROOM1-204ENST00000440118 MRPL2Q5T653 305 aaKnown RBP17.65■□□□□ 0.42
SHROOM1-204ENST00000440118 VPS33AQ96AX1 596 aa17.65■□□□□ 0.42
SHROOM1-204ENST00000440118 PLPPR2Q96GM1 343 aa17.65■□□□□ 0.42
SHROOM1-204ENST00000440118 C7orf26Q96N11 449 aa17.65■□□□□ 0.42
SHROOM1-204ENST00000440118 ZNF300Q96RE9 604 aaPredicted RBP17.65■□□□□ 0.42
SHROOM1-204ENST00000440118 OR10A4Q9H209 315 aa17.65■□□□□ 0.42
SHROOM1-204ENST00000440118 TPT1P8Q9HAU6 139 aa17.65■□□□□ 0.42
SHROOM1-204ENST00000440118 BCO1Q9HAY6 547 aa17.65■□□□□ 0.42
SHROOM1-204ENST00000440118 FAM234BA2RU67 622 aa17.64■□□□□ 0.41
SHROOM1-204ENST00000440118 CFAP73A6NFT4 308 aa17.64■□□□□ 0.41
SHROOM1-204ENST00000440118 AP3D1O14617 1153 aa17.64■□□□□ 0.41
SHROOM1-204ENST00000440118 ADAP00813 363 aa17.64■□□□□ 0.41
SHROOM1-204ENST00000440118 THBDP07204 575 aa17.64■□□□□ 0.41
SHROOM1-204ENST00000440118 ETFAP13804 333 aa17.64■□□□□ 0.41
SHROOM1-204ENST00000440118 NID1P14543 1247 aa17.64■□□□□ 0.41
SHROOM1-204ENST00000440118 FKBP2P26885 142 aaKnown RBP17.64■□□□□ 0.41
Retrieved 100 of 20,778 RNA–protein pairs in 38.5 ms