RNA–Protein interactions for RNA: ENST00000439475.1

MCF2L-216, Transcript of MCF.2 cell line derived transforming sequence like, humanhuman

TSL 5

Gene MCF2L, Length 453 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2L-216ENST00000439475 PAGE3Q5JUK9 113 aa9.37□□□□□ -0.91
MCF2L-216ENST00000439475 GCNT6Q5T4J0 391 aa9.37□□□□□ -0.91
MCF2L-216ENST00000439475 MRPL2Q5T653 305 aaKnown RBP9.37□□□□□ -0.91
MCF2L-216ENST00000439475 TMPPEQ6ZT21 453 aa9.37□□□□□ -0.91
MCF2L-216ENST00000439475 BEND4Q6ZU67 534 aa9.37□□□□□ -0.91
MCF2L-216ENST00000439475 FCRLAQ7L513 359 aa9.37□□□□□ -0.91
MCF2L-216ENST00000439475 HMGN2P46Q86SG4 172 aa9.37□□□□□ -0.91
MCF2L-216ENST00000439475 KRT73Q86Y46 540 aa9.37□□□□□ -0.91
MCF2L-216ENST00000439475 ZNF610Q8N9Z0 462 aa9.37□□□□□ -0.91
MCF2L-216ENST00000439475 LINC01560Q8TB33 94 aa9.37□□□□□ -0.91
MCF2L-216ENST00000439475 ROBO4Q8WZ75 1007 aa9.37□□□□□ -0.91
MCF2L-216ENST00000439475 AURKBQ96GD4 344 aaPredicted RBP9.37□□□□□ -0.91
MCF2L-216ENST00000439475 OR5B2Q96R09 309 aa9.37□□□□□ -0.91
MCF2L-216ENST00000439475 KLHDC3Q9BQ90 382 aa9.37□□□□□ -0.91
MCF2L-216ENST00000439475 SPATA9Q9BWV2 254 aa9.37□□□□□ -0.91
MCF2L-216ENST00000439475 TMEM120AQ9BXJ8 343 aa9.37□□□□□ -0.91
MCF2L-216ENST00000439475 BCL2L10Q9HD36 194 aa9.37□□□□□ -0.91
MCF2L-216ENST00000439475 A4GALTQ9NPC4 353 aa9.37□□□□□ -0.91
MCF2L-216ENST00000439475 CTPS2Q9NRF8 586 aa9.37□□□□□ -0.91
MCF2L-216ENST00000439475 ZNF446Q9NWS9 450 aa9.37□□□□□ -0.91
MCF2L-216ENST00000439475 CRIM1Q9NZV1 1036 aa9.37□□□□□ -0.91
MCF2L-216ENST00000439475 KLHL9Q9P2J3 617 aa9.37□□□□□ -0.91
MCF2L-216ENST00000439475 CHRNA9Q9UGM1 479 aa9.37□□□□□ -0.91
MCF2L-216ENST00000439475 CLEC4AQ9UMR7 237 aa9.37□□□□□ -0.91
MCF2L-216ENST00000439475 HDGFL3Q9Y3E1 203 aa9.37□□□□□ -0.91
MCF2L-216ENST00000439475 GMEB1Q9Y692 573 aa9.37□□□□□ -0.91
MCF2L-216ENST00000439475 A0A1W2PNR3 127 aa9.36□□□□□ -0.91
MCF2L-216ENST00000439475 CLDN24A6NM45 220 aa9.36□□□□□ -0.91
MCF2L-216ENST00000439475 C16orf97H3BN30 126 aa9.36□□□□□ -0.91
MCF2L-216ENST00000439475 SERPINB7O75635 380 aa9.36□□□□□ -0.91
MCF2L-216ENST00000439475 PGM3O95394 542 aa9.36□□□□□ -0.91
MCF2L-216ENST00000439475 ETS2P15036 469 aa9.36□□□□□ -0.91
MCF2L-216ENST00000439475 GPX2P18283 190 aa9.36□□□□□ -0.91
MCF2L-216ENST00000439475 SLC6A2P23975 617 aa9.36□□□□□ -0.91
MCF2L-216ENST00000439475 SHC1P29353 583 aa9.36□□□□□ -0.91
MCF2L-216ENST00000439475 SLC1A3P43003 542 aa9.36□□□□□ -0.91
MCF2L-216ENST00000439475 POLR2HP52434 150 aaKnown RBP9.36□□□□□ -0.91
MCF2L-216ENST00000439475 CDK6Q00534 326 aa9.36□□□□□ -0.91
MCF2L-216ENST00000439475 FAM27E3Q08E93 113 aa9.36□□□□□ -0.91
MCF2L-216ENST00000439475 EPS8Q12929 822 aa9.36□□□□□ -0.91
MCF2L-216ENST00000439475 MAPRE2Q15555 327 aa9.36□□□□□ -0.91
MCF2L-216ENST00000439475 ZNF239Q16600 458 aaKnown RBP9.36□□□□□ -0.91
MCF2L-216ENST00000439475 MMEL1Q495T6 779 aa9.36□□□□□ -0.91
MCF2L-216ENST00000439475 SYT14P1Q58G82 188 aa9.36□□□□□ -0.91
MCF2L-216ENST00000439475 RUNDC3AQ59EK9 446 aa9.36□□□□□ -0.91
MCF2L-216ENST00000439475 RNF220Q5VTB9 566 aa9.36□□□□□ -0.91
MCF2L-216ENST00000439475 REEP3Q6NUK4 255 aa9.36□□□□□ -0.91
MCF2L-216ENST00000439475 VRK2Q86Y07 508 aa9.36□□□□□ -0.91
MCF2L-216ENST00000439475 BHLHE22Q8NFJ8 381 aaPredicted RBP9.36□□□□□ -0.91
MCF2L-216ENST00000439475 RNF128Q8TEB7 428 aa9.36□□□□□ -0.91
MCF2L-216ENST00000439475 SLC35B4Q969S0 331 aa9.36□□□□□ -0.91
MCF2L-216ENST00000439475 DDIT4LQ96D03 193 aa9.36□□□□□ -0.91
MCF2L-216ENST00000439475 SH3GL1Q99961 368 aa9.36□□□□□ -0.91
MCF2L-216ENST00000439475 NAA11Q9BSU3 229 aaPredicted RBP9.36□□□□□ -0.91
MCF2L-216ENST00000439475 POLDIP3Q9BY77 421 aaKnown RBP9.36□□□□□ -0.91
MCF2L-216ENST00000439475 OPN3Q9H1Y3 402 aaPredicted RBP9.36□□□□□ -0.91
MCF2L-216ENST00000439475 CCDC134Q9H6E4 229 aa9.36□□□□□ -0.91
MCF2L-216ENST00000439475 TMEM38AQ9H6F2 299 aa9.36□□□□□ -0.91
MCF2L-216ENST00000439475 EVA1AQ9H8M9 152 aa9.36□□□□□ -0.91
MCF2L-216ENST00000439475 SLC52A3Q9NQ40 469 aa9.36□□□□□ -0.91
MCF2L-216ENST00000439475 FGFR1OP2Q9NVK5 253 aa9.36□□□□□ -0.91
MCF2L-216ENST00000439475 DNAJB12Q9NXW2 375 aaKnown RBP9.36□□□□□ -0.91
MCF2L-216ENST00000439475 ZNF226Q9NYT6 803 aa9.36□□□□□ -0.91
MCF2L-216ENST00000439475 VAPAQ9P0L0 249 aa9.36□□□□□ -0.91
MCF2L-216ENST00000439475 SLC13A4Q9UKG4 626 aa9.36□□□□□ -0.91
MCF2L-216ENST00000439475 ZNF443Q9Y2A4 671 aaPredicted RBP9.36□□□□□ -0.91
MCF2L-216ENST00000439475 DSPPQ9NZW4 1301 aa9.35□□□□□ -0.91
MCF2L-216ENST00000439475 TMED7-TICAM2A0A0A6YYA0 188 aa9.35□□□□□ -0.91
MCF2L-216ENST00000439475 SH3D21A4FU49 640 aa9.35□□□□□ -0.91
MCF2L-216ENST00000439475 CDHR4A6H8M9 788 aa9.35□□□□□ -0.91
MCF2L-216ENST00000439475 PRORSD1PA6NEY8 169 aa9.35□□□□□ -0.91
MCF2L-216ENST00000439475 A6NNC1 897 aa9.35□□□□□ -0.91
MCF2L-216ENST00000439475 ZNF208O43345 1280 aa9.35□□□□□ -0.91
MCF2L-216ENST00000439475 DNPH1O43598 174 aa9.35□□□□□ -0.91
MCF2L-216ENST00000439475 CTAG2O75638 210 aa9.35□□□□□ -0.91
MCF2L-216ENST00000439475 PMS2P2O95744 297 aa9.35□□□□□ -0.91
MCF2L-216ENST00000439475 CGAP01215 116 aa9.35□□□□□ -0.91
MCF2L-216ENST00000439475 YES1P07947 543 aa9.35□□□□□ -0.91
MCF2L-216ENST00000439475 ARAFP10398 606 aa9.35□□□□□ -0.91
MCF2L-216ENST00000439475 PPP3CBP16298 524 aa9.35□□□□□ -0.91
MCF2L-216ENST00000439475 CCNA2P20248 432 aa9.35□□□□□ -0.91
MCF2L-216ENST00000439475 CXCR1P25024 350 aa9.35□□□□□ -0.91
MCF2L-216ENST00000439475 TACR3P29371 465 aa9.35□□□□□ -0.91
MCF2L-216ENST00000439475 ADSLP30566 484 aaPredicted RBP9.35□□□□□ -0.91
MCF2L-216ENST00000439475 MDH1P40925 334 aaKnown RBP9.35□□□□□ -0.91
MCF2L-216ENST00000439475 DIO1P49895 249 aa9.35□□□□□ -0.91
MCF2L-216ENST00000439475 RBBP4Q09028 425 aa9.35□□□□□ -0.91
MCF2L-216ENST00000439475 RASGEF1BQ0VAM2 473 aa9.35□□□□□ -0.91
MCF2L-216ENST00000439475 NFYCQ13952 458 aa9.35□□□□□ -0.91
MCF2L-216ENST00000439475 CYLC2Q14093 348 aaPredicted RBP9.35□□□□□ -0.91
MCF2L-216ENST00000439475 GUSBP1Q15486 140 aa9.35□□□□□ -0.91
MCF2L-216ENST00000439475 MAPK11Q15759 364 aa9.35□□□□□ -0.91
MCF2L-216ENST00000439475 WBP2NLQ6ICG8 309 aa9.35□□□□□ -0.91
MCF2L-216ENST00000439475 ZNF474Q6S9Z5 364 aaPredicted RBP9.35□□□□□ -0.91
MCF2L-216ENST00000439475 ZNF836Q6ZNA1 936 aa9.35□□□□□ -0.91
MCF2L-216ENST00000439475 DHDDSQ86SQ9 333 aa9.35□□□□□ -0.91
MCF2L-216ENST00000439475 MTDHQ86UE4 582 aaKnown RBP9.35□□□□□ -0.91
MCF2L-216ENST00000439475 ADGRG3Q86Y34 549 aa9.35□□□□□ -0.91
MCF2L-216ENST00000439475 DPP10Q8N608 796 aa9.35□□□□□ -0.91
MCF2L-216ENST00000439475 ANKRD27Q96NW4 1050 aa9.35□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 82.7 ms