RNA–Protein interactions for RNA: ENST00000429895.5

PTPRF-206, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 6,312 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-206ENST00000429895 PODNL1Q6PEZ8 512 aa14.4□□□□□ -0.1
PTPRF-206ENST00000429895 NDUFAF7Q7L592 441 aa14.4□□□□□ -0.1
PTPRF-206ENST00000429895 GPR150Q8NGU9 434 aa14.4□□□□□ -0.1
PTPRF-206ENST00000429895 NT5C3BQ969T7 300 aa14.4□□□□□ -0.1
PTPRF-206ENST00000429895 ELMOD3Q96FG2 381 aa14.4□□□□□ -0.1
PTPRF-206ENST00000429895 ZNF587Q96SQ5 575 aaPredicted RBP14.4□□□□□ -0.1
PTPRF-206ENST00000429895 C1QTNF2Q9BXJ5 285 aa14.4□□□□□ -0.1
PTPRF-206ENST00000429895 DNMT3BQ9UBC3 853 aaKnown RBP14.4□□□□□ -0.1
PTPRF-206ENST00000429895 WDR37Q9Y2I8 494 aa14.4□□□□□ -0.1
PTPRF-206ENST00000429895 FOXE1O00358 373 aaPredicted RBP14.4□□□□□ -0.1
PTPRF-206ENST00000429895 BET1O15155 118 aa14.4□□□□□ -0.1
PTPRF-206ENST00000429895 GMDSO60547 372 aa14.4□□□□□ -0.1
PTPRF-206ENST00000429895 SRPX2O60687 465 aaPredicted RBP14.4□□□□□ -0.1
PTPRF-206ENST00000429895 C1SP09871 688 aa14.4□□□□□ -0.1
PTPRF-206ENST00000429895 HEPHL1Q6MZM0 1159 aa14.4□□□□□ -0.1
PTPRF-206ENST00000429895 OR2T35Q8NGX2 323 aa14.4□□□□□ -0.1
PTPRF-206ENST00000429895 ZC3HAV1LQ96H79 300 aaKnown RBP14.4□□□□□ -0.1
PTPRF-206ENST00000429895 SUCNR1Q9BXA5 334 aa14.4□□□□□ -0.1
PTPRF-206ENST00000429895 OR51E2Q9H255 320 aa14.4□□□□□ -0.1
PTPRF-206ENST00000429895 SDHAF2Q9NX18 166 aa14.4□□□□□ -0.1
PTPRF-206ENST00000429895 SIPA1L2Q9P2F8 1722 aaPredicted RBP14.4□□□□□ -0.1
PTPRF-206ENST00000429895 HIDE1A8MVS5 230 aa14.4□□□□□ -0.1
PTPRF-206ENST00000429895 HPGDSO60760 199 aa14.4□□□□□ -0.1
PTPRF-206ENST00000429895 ZIC2O95409 532 aaPredicted RBP14.4□□□□□ -0.1
PTPRF-206ENST00000429895 APEHP13798 732 aaKnown RBP14.4□□□□□ -0.1
PTPRF-206ENST00000429895 CYCSP99999 105 aaKnown RBP14.4□□□□□ -0.1
PTPRF-206ENST00000429895 UBQLN4Q9NRR5 601 aa14.4□□□□□ -0.1
PTPRF-206ENST00000429895 NOSIPQ9Y314 301 aaKnown RBP14.4□□□□□ -0.1
PTPRF-206ENST00000429895 PTHP01270 115 aa14.39□□□□□ -0.11
PTPRF-206ENST00000429895 CD63P08962 238 aa14.39□□□□□ -0.11
PTPRF-206ENST00000429895 HSD17B7P56937 341 aa14.39□□□□□ -0.11
PTPRF-206ENST00000429895 C6orf89Q6UWU4 347 aa14.39□□□□□ -0.11
PTPRF-206ENST00000429895 H1FXQ92522 213 aaKnown RBP14.39□□□□□ -0.11
PTPRF-206ENST00000429895 PGAP3Q96FM1 320 aaPredicted RBP14.39□□□□□ -0.11
PTPRF-206ENST00000429895 HCFC2Q9Y5Z7 792 aa14.39□□□□□ -0.11
PTPRF-206ENST00000429895 IGKV6D-21A0A0A0MT36 114 aa14.39□□□□□ -0.11
PTPRF-206ENST00000429895 H0YGG7 62 aa14.39□□□□□ -0.11
PTPRF-206ENST00000429895 F3P13726 295 aa14.39□□□□□ -0.11
PTPRF-206ENST00000429895 SYPL1Q16563 259 aa14.39□□□□□ -0.11
PTPRF-206ENST00000429895 STEAP3Q658P3 488 aa14.39□□□□□ -0.11
PTPRF-206ENST00000429895 XRN1Q8IZH2 1706 aaKnown RBP14.39□□□□□ -0.11
PTPRF-206ENST00000429895 ADAMTS16Q8TE57 1224 aa14.39□□□□□ -0.11
PTPRF-206ENST00000429895 HAS2Q92819 552 aa14.39□□□□□ -0.11
PTPRF-206ENST00000429895 DECR2Q9NUI1 292 aa14.39□□□□□ -0.11
PTPRF-206ENST00000429895 TMEM45AQ9NWC5 275 aa14.39□□□□□ -0.11
PTPRF-206ENST00000429895 GOLGA4Q13439 2230 aaKnown RBP14.39□□□□□ -0.11
PTPRF-206ENST00000429895 PRAMEF27A3QJZ7 478 aa14.39□□□□□ -0.11
PTPRF-206ENST00000429895 TUSC2O75896 110 aa14.39□□□□□ -0.11
PTPRF-206ENST00000429895 GJA4P35212 333 aa14.39□□□□□ -0.11
PTPRF-206ENST00000429895 ZNF140P52738 457 aaPredicted RBP14.39□□□□□ -0.11
PTPRF-206ENST00000429895 PRAMEF9Q5VWM5 478 aa14.39□□□□□ -0.11
PTPRF-206ENST00000429895 OR8J2Q8NGG1 315 aa14.39□□□□□ -0.11
PTPRF-206ENST00000429895 OR11L1Q8NGX0 322 aa14.39□□□□□ -0.11
PTPRF-206ENST00000429895 ZNF480Q8WV37 535 aa14.39□□□□□ -0.11
PTPRF-206ENST00000429895 EHFQ9NZC4 300 aa14.39□□□□□ -0.11
PTPRF-206ENST00000429895 SLC23A2Q9UGH3 650 aa14.39□□□□□ -0.11
PTPRF-206ENST00000429895 TRAPPC2LQ9UL33 140 aa14.39□□□□□ -0.11
PTPRF-206ENST00000429895 COL2A1P02458 1487 aaPredicted RBP14.39□□□□□ -0.11
PTPRF-206ENST00000429895 HOXB5P09067 269 aa14.39□□□□□ -0.11
PTPRF-206ENST00000429895 HIST1H1TP22492 207 aaPredicted RBP14.39□□□□□ -0.11
PTPRF-206ENST00000429895 CAMK2DQ13557 499 aa14.39□□□□□ -0.11
PTPRF-206ENST00000429895 VAPAQ9P0L0 249 aa14.39□□□□□ -0.11
PTPRF-206ENST00000429895 DNAJB6O75190 326 aa14.39□□□□□ -0.11
PTPRF-206ENST00000429895 FCGR2AP12318 317 aa14.39□□□□□ -0.11
PTPRF-206ENST00000429895 CTSL3PQ5NE16 218 aa14.39□□□□□ -0.11
PTPRF-206ENST00000429895 CPXM2Q8N436 756 aa14.39□□□□□ -0.11
PTPRF-206ENST00000429895 C19orf47Q8N9M1 422 aaKnown RBP14.39□□□□□ -0.11
PTPRF-206ENST00000429895 AGBL5Q8NDL9 886 aa14.39□□□□□ -0.11
PTPRF-206ENST00000429895 ISG20Q96AZ6 181 aaKnown RBP14.39□□□□□ -0.11
PTPRF-206ENST00000429895 DAZAP1Q96EP5 407 aaKnown RBP14.39□□□□□ -0.11
PTPRF-206ENST00000429895 SLC30A3Q99726 388 aa14.39□□□□□ -0.11
PTPRF-206ENST00000429895 NGBQ9NPG2 151 aa14.39□□□□□ -0.11
PTPRF-206ENST00000429895 C19orf12Q9NSK7 152 aa14.39□□□□□ -0.11
PTPRF-206ENST00000429895 ANKRD10Q9NXR5 420 aa14.39□□□□□ -0.11
PTPRF-206ENST00000429895 OR6C2Q9NZP2 312 aa14.39□□□□□ -0.11
PTPRF-206ENST00000429895 SHPRHQ149N8 1683 aa14.39□□□□□ -0.11
PTPRF-206ENST00000429895 NCR1O76036 304 aa14.38□□□□□ -0.11
PTPRF-206ENST00000429895 VRK1Q99986 396 aaPredicted RBP14.38□□□□□ -0.11
PTPRF-206ENST00000429895 ZNF696Q9H7X3 374 aa14.38□□□□□ -0.11
PTPRF-206ENST00000429895 SLC6A20Q9NP91 592 aa14.38□□□□□ -0.11
PTPRF-206ENST00000429895 RPS17P08708 135 aaKnown RBP14.38□□□□□ -0.11
PTPRF-206ENST00000429895 CA5AP35218 305 aa14.38□□□□□ -0.11
PTPRF-206ENST00000429895 HOXA1P49639 335 aaPredicted RBP14.38□□□□□ -0.11
PTPRF-206ENST00000429895 SSR4P51571 173 aa14.38□□□□□ -0.11
PTPRF-206ENST00000429895 IL13RA1P78552 427 aa14.38□□□□□ -0.11
PTPRF-206ENST00000429895 MS4A2Q01362 244 aa14.38□□□□□ -0.11
PTPRF-206ENST00000429895 FGFBP1Q14512 234 aa14.38□□□□□ -0.11
PTPRF-206ENST00000429895 OR8B8Q15620 311 aa14.38□□□□□ -0.11
PTPRF-206ENST00000429895 DUSP19Q8WTR2 217 aa14.38□□□□□ -0.11
PTPRF-206ENST00000429895 ARL11Q969Q4 196 aa14.38□□□□□ -0.11
PTPRF-206ENST00000429895 THAP7Q9BT49 309 aaPredicted RBP14.38□□□□□ -0.11
PTPRF-206ENST00000429895 HHLA2Q9UM44 414 aa14.38□□□□□ -0.11
PTPRF-206ENST00000429895 V9GY05 133 aa14.38□□□□□ -0.11
PTPRF-206ENST00000429895 IFT172Q9UG01 1749 aa14.38□□□□□ -0.11
PTPRF-206ENST00000429895 DRGXA6NNA5 263 aa14.38□□□□□ -0.11
PTPRF-206ENST00000429895 HNF4GQ14541 408 aa14.38□□□□□ -0.11
PTPRF-206ENST00000429895 METTL11BQ5VVY1 283 aa14.38□□□□□ -0.11
PTPRF-206ENST00000429895 PLAG1Q6DJT9 500 aa14.38□□□□□ -0.11
PTPRF-206ENST00000429895 FAM160A2Q8N612 972 aaPredicted RBP14.38□□□□□ -0.11
PTPRF-206ENST00000429895 TCTN2Q96GX1 697 aa14.38□□□□□ -0.11
Retrieved 100 of 20,778 RNA–protein pairs in 83.1 ms