RNA–Protein interactions for RNA: ENST00000425428.6

CD44-207, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best)

Gene CD44, Length 1,768 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-207ENST00000425428 CHST2Q9Y4C5 530 aa9.17□□□□□ -0.94
CD44-207ENST00000425428 ASPMQ8IZT6 3477 aa9.16□□□□□ -0.94
CD44-207ENST00000425428 FRYQ5TBA9 3013 aa9.16□□□□□ -0.94
CD44-207ENST00000425428 DMXL2Q8TDJ6 3036 aa9.16□□□□□ -0.94
CD44-207ENST00000425428 TRGV5A0A0B4J1U4 118 aa9.16□□□□□ -0.94
CD44-207ENST00000425428 A0A0B4J2E0 115 aa9.16□□□□□ -0.94
CD44-207ENST00000425428 A0A0G2JMM0 328 aa9.16□□□□□ -0.94
CD44-207ENST00000425428 A0A1B0GX12 115 aa9.16□□□□□ -0.94
CD44-207ENST00000425428 A0A1W2PPB8 328 aa9.16□□□□□ -0.94
CD44-207ENST00000425428 A0A1W2PRQ8 180 aa9.16□□□□□ -0.94
CD44-207ENST00000425428 A0A1W2PRS3 328 aa9.16□□□□□ -0.94
CD44-207ENST00000425428 C7orf72A4D263 438 aa9.16□□□□□ -0.94
CD44-207ENST00000425428 TTLL8A6PVC2 850 aa9.16□□□□□ -0.94
CD44-207ENST00000425428 A8MVM7 634 aa9.16□□□□□ -0.94
CD44-207ENST00000425428 KIR3DP1A8MWS1 328 aa9.16□□□□□ -0.94
CD44-207ENST00000425428 OIP5O43482 229 aa9.16□□□□□ -0.94
CD44-207ENST00000425428 OR2T1O43869 369 aa9.16□□□□□ -0.94
CD44-207ENST00000425428 HCN1O60741 890 aa9.16□□□□□ -0.94
CD44-207ENST00000425428 DIRAS1O95057 198 aa9.16□□□□□ -0.94
CD44-207ENST00000425428 CCNB2O95067 398 aa9.16□□□□□ -0.94
CD44-207ENST00000425428 AHSA1O95433 338 aa9.16□□□□□ -0.94
CD44-207ENST00000425428 ACTL6AO96019 429 aa9.16□□□□□ -0.94
CD44-207ENST00000425428 SEMG1P04279 462 aa9.16□□□□□ -0.94
CD44-207ENST00000425428 HIST1H2ABP04908 130 aa9.16□□□□□ -0.94
CD44-207ENST00000425428 HPNP05981 417 aa9.16□□□□□ -0.94
CD44-207ENST00000425428 PEPDP12955 493 aa9.16□□□□□ -0.94
CD44-207ENST00000425428 ZNF23P17027 643 aa9.16□□□□□ -0.94
CD44-207ENST00000425428 POU3F2P20265 443 aaPredicted RBP9.16□□□□□ -0.94
CD44-207ENST00000425428 CHMP24386 653 aa9.16□□□□□ -0.94
CD44-207ENST00000425428 MAGEA5P43359 124 aa9.16□□□□□ -0.94
CD44-207ENST00000425428 CD97P48960 835 aa9.16□□□□□ -0.94
CD44-207ENST00000425428 RPS3AP61247 264 aaKnown RBP9.16□□□□□ -0.94
CD44-207ENST00000425428 FOXO1Q12778 655 aa9.16□□□□□ -0.94
CD44-207ENST00000425428 DGCR6Q14129 220 aa9.16□□□□□ -0.94
CD44-207ENST00000425428 MFSD13AQ14CX5 517 aa9.16□□□□□ -0.94
CD44-207ENST00000425428 ATP6AP1Q15904 470 aa9.16□□□□□ -0.94
CD44-207ENST00000425428 HIST3H2AQ7L7L0 130 aa9.16□□□□□ -0.94
CD44-207ENST00000425428 GDF7Q7Z4P5 450 aa9.16□□□□□ -0.94
CD44-207ENST00000425428 YRDCQ86U90 279 aaKnown RBP9.16□□□□□ -0.94
CD44-207ENST00000425428 HIPK1Q86Z02 1210 aa9.16□□□□□ -0.94
CD44-207ENST00000425428 LACC1Q8IV20 430 aa9.16□□□□□ -0.94
CD44-207ENST00000425428 PQLC1Q8N2U9 271 aa9.16□□□□□ -0.94
CD44-207ENST00000425428 GTPBP8Q8N3Z3 284 aaPredicted RBP9.16□□□□□ -0.94
CD44-207ENST00000425428 MEIOBQ8N635 442 aa9.16□□□□□ -0.94
CD44-207ENST00000425428 ICA1LQ8NDH6 482 aa9.16□□□□□ -0.94
CD44-207ENST00000425428 ATP6V1C2Q8NEY4 427 aa9.16□□□□□ -0.94
CD44-207ENST00000425428 OR52J3Q8NH60 311 aa9.16□□□□□ -0.94
CD44-207ENST00000425428 PIGXQ8TBF5 258 aa9.16□□□□□ -0.94
CD44-207ENST00000425428 HIST1H2ACQ93077 130 aa9.16□□□□□ -0.94
CD44-207ENST00000425428 ZHX1-C8orf76Q96EF9 292 aa9.16□□□□□ -0.94
CD44-207ENST00000425428 CRELD1Q96HD1 420 aa9.16□□□□□ -0.94
CD44-207ENST00000425428 ALPK1Q96QP1 1244 aa9.16□□□□□ -0.94
CD44-207ENST00000425428 OSBPL10Q9BXB5 764 aa9.16□□□□□ -0.94
CD44-207ENST00000425428 SLC19A3Q9BZV2 496 aa9.16□□□□□ -0.94
CD44-207ENST00000425428 OR2B2Q9GZK3 357 aa9.16□□□□□ -0.94
CD44-207ENST00000425428 ACKR4Q9NPB9 350 aa9.16□□□□□ -0.94
CD44-207ENST00000425428 RHCGQ9UBD6 479 aa9.16□□□□□ -0.94
CD44-207ENST00000425428 ENOPH1Q9UHY7 261 aa9.16□□□□□ -0.94
CD44-207ENST00000425428 TMEM5Q9Y2B1 443 aa9.16□□□□□ -0.94
CD44-207ENST00000425428 CSAG2Q9Y5P2 127 aa9.16□□□□□ -0.94
CD44-207ENST00000425428 AP4B1Q9Y6B7 739 aa9.16□□□□□ -0.94
CD44-207ENST00000425428 MPDZO75970 2070 aa9.15□□□□□ -0.94
CD44-207ENST00000425428 A0A087WUJ7 227 aa9.15□□□□□ -0.94
CD44-207ENST00000425428 LRRC3CA6NJW4 275 aa9.15□□□□□ -0.94
CD44-207ENST00000425428 EIF4E1BA6NMX2 242 aaKnown RBP9.15□□□□□ -0.94
CD44-207ENST00000425428 G3V2T6 193 aa9.15□□□□□ -0.94
CD44-207ENST00000425428 H3BML4 177 aa9.15□□□□□ -0.94
CD44-207ENST00000425428 J3KTA2 159 aa9.15□□□□□ -0.94
CD44-207ENST00000425428 ZNF208O43345 1280 aa9.15□□□□□ -0.94
CD44-207ENST00000425428 SUSD5O60279 629 aa9.15□□□□□ -0.94
CD44-207ENST00000425428 OR10H3O60404 316 aa9.15□□□□□ -0.94
CD44-207ENST00000425428 GLSO94925 669 aaPredicted RBP9.15□□□□□ -0.94
CD44-207ENST00000425428 EPPINO95925 133 aa9.15□□□□□ -0.94
CD44-207ENST00000425428 PDGFAP04085 211 aa9.15□□□□□ -0.94
CD44-207ENST00000425428 CCNA2P20248 432 aa9.15□□□□□ -0.94
CD44-207ENST00000425428 FPR1P21462 350 aa9.15□□□□□ -0.94
CD44-207ENST00000425428 RAC1P63000 192 aa9.15□□□□□ -0.94
CD44-207ENST00000425428 RBPJQ06330 500 aa9.15□□□□□ -0.94
CD44-207ENST00000425428 FOXF1Q12946 379 aa9.15□□□□□ -0.94
CD44-207ENST00000425428 INPP5JQ15735 1006 aaPredicted RBP9.15□□□□□ -0.94
CD44-207ENST00000425428 NADK2Q4G0N4 442 aa9.15□□□□□ -0.94
CD44-207ENST00000425428 SLC25A53Q5H9E4 307 aa9.15□□□□□ -0.94
CD44-207ENST00000425428 WIPI1Q5MNZ9 446 aaPredicted RBP9.15□□□□□ -0.94
CD44-207ENST00000425428 LSM14AQ8ND56 463 aaKnown RBP9.15□□□□□ -0.94
CD44-207ENST00000425428 OR4D11Q8NGI4 311 aa9.15□□□□□ -0.94
CD44-207ENST00000425428 STK35Q8TDR2 534 aa9.15□□□□□ -0.94
CD44-207ENST00000425428 TMEM239Q8WW34 195 aa9.15□□□□□ -0.94
CD44-207ENST00000425428 ACOT11Q8WXI4 607 aaPredicted RBP9.15□□□□□ -0.94
CD44-207ENST00000425428 LRTOMTQ8WZ04 291 aa9.15□□□□□ -0.94
CD44-207ENST00000425428 SMPDL3BQ92485 455 aa9.15□□□□□ -0.94
CD44-207ENST00000425428 EME1Q96AY2 570 aa9.15□□□□□ -0.94
CD44-207ENST00000425428 C3orf49Q96BT1 292 aa9.15□□□□□ -0.94
CD44-207ENST00000425428 SARAFQ96BY9 339 aa9.15□□□□□ -0.94
CD44-207ENST00000425428 NRBF2Q96F24 287 aa9.15□□□□□ -0.94
CD44-207ENST00000425428 C9orf16Q9BUW7 83 aa9.15□□□□□ -0.94
CD44-207ENST00000425428 ADAM19Q9H013 955 aa9.15□□□□□ -0.94
CD44-207ENST00000425428 DEFB127Q9H1M4 99 aa9.15□□□□□ -0.94
CD44-207ENST00000425428 C8orf4Q9NR00 106 aa9.15□□□□□ -0.94
CD44-207ENST00000425428 PAQR5Q9NXK6 330 aaPredicted RBP9.15□□□□□ -0.94
CD44-207ENST00000425428 STX18Q9P2W9 335 aaKnown RBP9.15□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 22.6 ms