RNA–Protein interactions for RNA: ENST00000418501.5

USP54-203, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 2

Gene USP54, Length 4,370 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-203ENST00000418501 ENPP5Q9UJA9 477 aa7.71□□□□□ -1.18
USP54-203ENST00000418501 ZNF229Q9UJW7 825 aa7.71□□□□□ -1.18
USP54-203ENST00000418501 CARD8Q9Y2G2 431 aa7.71□□□□□ -1.18
USP54-203ENST00000418501 HEATR5BQ9P2D3 2071 aa7.71□□□□□ -1.18
USP54-203ENST00000418501 A8MVM7 634 aa7.71□□□□□ -1.18
USP54-203ENST00000418501 DNAJB6O75190 326 aa7.71□□□□□ -1.18
USP54-203ENST00000418501 MT-ND5P03915 603 aa7.71□□□□□ -1.18
USP54-203ENST00000418501 APEHP13798 732 aaKnown RBP7.71□□□□□ -1.18
USP54-203ENST00000418501 EVI2BP34910 448 aa7.71□□□□□ -1.18
USP54-203ENST00000418501 DCTN2Q13561 401 aaKnown RBP7.71□□□□□ -1.18
USP54-203ENST00000418501 SPHARQ15513 63 aa7.71□□□□□ -1.18
USP54-203ENST00000418501 JMJD6Q6NYC1 403 aaPredicted RBP7.71□□□□□ -1.18
USP54-203ENST00000418501 MEPCEQ7L2J0 689 aaKnown RBP7.71□□□□□ -1.18
USP54-203ENST00000418501 ACBD7Q8N6N7 88 aa7.71□□□□□ -1.18
USP54-203ENST00000418501 OR2Y1Q8NGV0 311 aa7.71□□□□□ -1.18
USP54-203ENST00000418501 C5orf34Q96MH7 638 aa7.71□□□□□ -1.18
USP54-203ENST00000418501 HPF1Q9NWY4 346 aa7.71□□□□□ -1.18
USP54-203ENST00000418501 REV1Q9UBZ9 1251 aa7.71□□□□□ -1.18
USP54-203ENST00000418501 ICAM5Q9UMF0 924 aa7.71□□□□□ -1.18
USP54-203ENST00000418501 PLXND1Q9Y4D7 1925 aa7.71□□□□□ -1.18
USP54-203ENST00000418501 C21orf140B9A014 251 aa7.71□□□□□ -1.18
USP54-203ENST00000418501 ENTPD6O75354 484 aa7.71□□□□□ -1.18
USP54-203ENST00000418501 MT-CO3P00414 261 aa7.71□□□□□ -1.18
USP54-203ENST00000418501 STSP08842 583 aa7.71□□□□□ -1.18
USP54-203ENST00000418501 NUDT6P53370 316 aa7.71□□□□□ -1.18
USP54-203ENST00000418501 ZNF91Q05481 1191 aa7.71□□□□□ -1.18
USP54-203ENST00000418501 ZFP36L1Q07352 338 aaKnown RBP7.71□□□□□ -1.18
USP54-203ENST00000418501 FAM69BQ5VUD6 431 aa7.71□□□□□ -1.18
USP54-203ENST00000418501 MZT2AQ6P582 158 aa7.71□□□□□ -1.18
USP54-203ENST00000418501 NPSR1Q6W5P4 371 aa7.71□□□□□ -1.18
USP54-203ENST00000418501 LNX2Q8N448 690 aa7.71□□□□□ -1.18
USP54-203ENST00000418501 OR2T4Q8NH00 348 aa7.71□□□□□ -1.18
USP54-203ENST00000418501 COG8Q96MW5 612 aa7.71□□□□□ -1.18
USP54-203ENST00000418501 ZNF582Q96NG8 517 aaPredicted RBP7.71□□□□□ -1.18
USP54-203ENST00000418501 LHPPQ9H008 270 aa7.71□□□□□ -1.18
USP54-203ENST00000418501 ZNF226Q9NYT6 803 aa7.71□□□□□ -1.18
USP54-203ENST00000418501 FANCMQ8IYD8 2048 aa7.7□□□□□ -1.18
USP54-203ENST00000418501 HTTP42858 3142 aa7.7□□□□□ -1.18
USP54-203ENST00000418501 ANKUB1A6NFN9 424 aa7.7□□□□□ -1.18
USP54-203ENST00000418501 ZNF670-ZNF695F2Z2N8 137 aa7.7□□□□□ -1.18
USP54-203ENST00000418501 C1QCP02747 245 aa7.7□□□□□ -1.18
USP54-203ENST00000418501 P04436 131 aa7.7□□□□□ -1.18
USP54-203ENST00000418501 HLA-DPB1P04440 258 aa7.7□□□□□ -1.18
USP54-203ENST00000418501 DBTP11182 482 aaKnown RBP7.7□□□□□ -1.18
USP54-203ENST00000418501 MYF5P13349 255 aa7.7□□□□□ -1.18
USP54-203ENST00000418501 ZNF136P52737 540 aa7.7□□□□□ -1.18
USP54-203ENST00000418501 HOXC5Q00444 222 aa7.7□□□□□ -1.18
USP54-203ENST00000418501 SSPNQ14714 243 aa7.7□□□□□ -1.18
USP54-203ENST00000418501 ZNF846Q147U1 533 aa7.7□□□□□ -1.18
USP54-203ENST00000418501 FNDC8Q8TC99 324 aa7.7□□□□□ -1.18
USP54-203ENST00000418501 SH3YL1Q96HL8 342 aaPredicted RBP7.7□□□□□ -1.18
USP54-203ENST00000418501 SGCZQ96LD1 299 aa7.7□□□□□ -1.18
USP54-203ENST00000418501 MGLLQ99685 303 aa7.7□□□□□ -1.18
USP54-203ENST00000418501 UBQLN3Q9H347 655 aa7.7□□□□□ -1.18
USP54-203ENST00000418501 SYNPO2LQ9H987 977 aa7.7□□□□□ -1.18
USP54-203ENST00000418501 CMC2Q9NRP2 79 aa7.7□□□□□ -1.18
USP54-203ENST00000418501 GPR83Q9NYM4 423 aa7.7□□□□□ -1.18
USP54-203ENST00000418501 B4GALT7Q9UBV7 327 aa7.7□□□□□ -1.18
USP54-203ENST00000418501 GOLGA4Q13439 2230 aaKnown RBP7.7□□□□□ -1.18
USP54-203ENST00000418501 NPIPB9F8W1W9 429 aa7.7□□□□□ -1.18
USP54-203ENST00000418501 MED26O95402 600 aa7.7□□□□□ -1.18
USP54-203ENST00000418501 CH25HO95992 272 aa7.7□□□□□ -1.18
USP54-203ENST00000418501 GBX2P52951 348 aaPredicted RBP7.7□□□□□ -1.18
USP54-203ENST00000418501 MLLT11Q13015 90 aaPredicted RBP7.7□□□□□ -1.18
USP54-203ENST00000418501 MAPK14Q16539 360 aa7.7□□□□□ -1.18
USP54-203ENST00000418501 ALG10Q5BKT4 473 aa7.7□□□□□ -1.18
USP54-203ENST00000418501 TMEM236Q5W0B7 351 aa7.7□□□□□ -1.18
USP54-203ENST00000418501 TMEM205Q6UW68 189 aa7.7□□□□□ -1.18
USP54-203ENST00000418501 GATSQ8NAP1 163 aa7.7□□□□□ -1.18
USP54-203ENST00000418501 OR4D11Q8NGI4 311 aa7.7□□□□□ -1.18
USP54-203ENST00000418501 OR51A7Q8NH64 312 aa7.7□□□□□ -1.18
USP54-203ENST00000418501 PNPLA2Q96AD5 504 aa7.7□□□□□ -1.18
USP54-203ENST00000418501 ARSGQ96EG1 525 aa7.7□□□□□ -1.18
USP54-203ENST00000418501 FER1L6-AS2Q96M78 137 aa7.7□□□□□ -1.18
USP54-203ENST00000418501 FGF20Q9NP95 211 aaPredicted RBP7.7□□□□□ -1.18
USP54-203ENST00000418501 FARSAQ9Y285 508 aaKnown RBP7.7□□□□□ -1.18
USP54-203ENST00000418501 TMEM129A0AVI4 362 aa7.7□□□□□ -1.18
USP54-203ENST00000418501 PATE3B3GLJ2 98 aa7.7□□□□□ -1.18
USP54-203ENST00000418501 PLD2O14939 933 aa7.7□□□□□ -1.18
USP54-203ENST00000418501 F8A1P23610 371 aa7.7□□□□□ -1.18
USP54-203ENST00000418501 ABCD3P28288 659 aa7.7□□□□□ -1.18
USP54-203ENST00000418501 TACR3P29371 465 aa7.7□□□□□ -1.18
USP54-203ENST00000418501 DAP3P51398 398 aaKnown RBP7.7□□□□□ -1.18
USP54-203ENST00000418501 WNT4P56705 351 aa7.7□□□□□ -1.18
USP54-203ENST00000418501 CFHR1Q03591 330 aa7.7□□□□□ -1.18
USP54-203ENST00000418501 ITGADQ13349 1161 aa7.7□□□□□ -1.18
USP54-203ENST00000418501 PLEKHG7Q6ZR37 379 aa7.7□□□□□ -1.18
USP54-203ENST00000418501 OLIG3Q7RTU3 272 aa7.7□□□□□ -1.18
USP54-203ENST00000418501 NAA11Q9BSU3 229 aaPredicted RBP7.7□□□□□ -1.18
USP54-203ENST00000418501 SEMA4CQ9C0C4 833 aa7.7□□□□□ -1.18
USP54-203ENST00000418501 SLITRK2Q9H156 845 aa7.7□□□□□ -1.18
USP54-203ENST00000418501 PPIEQ9UNP9 301 aaKnown RBP7.7□□□□□ -1.18
USP54-203ENST00000418501 CAB39Q9Y376 341 aaPredicted RBP7.7□□□□□ -1.18
USP54-203ENST00000418501 PEX16Q9Y5Y5 336 aa7.7□□□□□ -1.18
USP54-203ENST00000418501 TMEM229AB2RXF0 380 aa7.69□□□□□ -1.18
USP54-203ENST00000418501 KDM4EB2RXH2 506 aaPredicted RBP7.69□□□□□ -1.18
USP54-203ENST00000418501 ICOSLGO75144 302 aa7.69□□□□□ -1.18
USP54-203ENST00000418501 CSO75390 466 aaKnown RBP7.69□□□□□ -1.18
USP54-203ENST00000418501 RRADP55042 308 aa7.69□□□□□ -1.18
USP54-203ENST00000418501 IL10RAQ13651 578 aa7.69□□□□□ -1.18
Retrieved 100 of 20,778 RNA–protein pairs in 31.3 ms