RNA–Protein interactions for RNA: ENST00000413716.6

CCDC88A-204, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best) BASIC

Gene CCDC88A, Length 9,586 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-204ENST00000413716 KCTD11Q693B1 232 aa12.57□□□□□ -0.4
CCDC88A-204ENST00000413716 STEAP1BQ6NZ63 245 aa12.57□□□□□ -0.4
CCDC88A-204ENST00000413716 TMEM217Q8N7C4 229 aa12.57□□□□□ -0.4
CCDC88A-204ENST00000413716 ZNF317Q96PQ6 595 aaPredicted RBP12.57□□□□□ -0.4
CCDC88A-204ENST00000413716 ENKD1Q9H0I2 346 aa12.57□□□□□ -0.4
CCDC88A-204ENST00000413716 SLCO5A1Q9H2Y9 848 aa12.57□□□□□ -0.4
CCDC88A-204ENST00000413716 CLDN7O95471 211 aa12.56□□□□□ -0.4
CCDC88A-204ENST00000413716 RAB40ALP0C0E4 278 aa12.56□□□□□ -0.4
CCDC88A-204ENST00000413716 OVCH1Q7RTY7 1134 aa12.56□□□□□ -0.4
CCDC88A-204ENST00000413716 RAB40AQ8WXH6 277 aa12.56□□□□□ -0.4
CCDC88A-204ENST00000413716 HRASLS2Q9NWW9 162 aa12.56□□□□□ -0.4
CCDC88A-204ENST00000413716 SORDQ00796 357 aa12.56□□□□□ -0.4
CCDC88A-204ENST00000413716 CLINT1Q14677 625 aa12.56□□□□□ -0.4
CCDC88A-204ENST00000413716 PRAMEF19Q5SWL8 479 aa12.56□□□□□ -0.4
CCDC88A-204ENST00000413716 UNC5DQ6UXZ4 953 aa12.56□□□□□ -0.4
CCDC88A-204ENST00000413716 SLC35G3Q8N808 338 aa12.56□□□□□ -0.4
CCDC88A-204ENST00000413716 OR10Z1Q8NGY1 313 aa12.56□□□□□ -0.4
CCDC88A-204ENST00000413716 GPR88Q9GZN0 384 aa12.56□□□□□ -0.4
CCDC88A-204ENST00000413716 CD163L1Q9NR16 1453 aa12.56□□□□□ -0.4
CCDC88A-204ENST00000413716 DDTLA6NHG4 134 aaPredicted RBP12.56□□□□□ -0.4
CCDC88A-204ENST00000413716 SCGB1A1P11684 91 aa12.56□□□□□ -0.4
CCDC88A-204ENST00000413716 DUSP3P51452 185 aaPredicted RBP12.56□□□□□ -0.4
CCDC88A-204ENST00000413716 TPMTP51580 245 aa12.56□□□□□ -0.4
CCDC88A-204ENST00000413716 OPCMLQ14982 345 aa12.56□□□□□ -0.4
CCDC88A-204ENST00000413716 NSDHLQ15738 373 aa12.56□□□□□ -0.4
CCDC88A-204ENST00000413716 GPR22Q99680 433 aa12.56□□□□□ -0.4
CCDC88A-204ENST00000413716 SGPP1Q9BX95 441 aa12.56□□□□□ -0.4
CCDC88A-204ENST00000413716 CHRDQ9H2X0 955 aa12.56□□□□□ -0.4
CCDC88A-204ENST00000413716 NSUN3Q9H649 340 aaKnown RBP12.56□□□□□ -0.4
CCDC88A-204ENST00000413716 USP31Q70CQ4 1352 aa12.56□□□□□ -0.4
CCDC88A-204ENST00000413716 FAM159BA6NKW6 160 aa12.56□□□□□ -0.4
CCDC88A-204ENST00000413716 KCNQ2O43526 872 aa12.56□□□□□ -0.4
CCDC88A-204ENST00000413716 MMP2P08253 660 aa12.56□□□□□ -0.4
CCDC88A-204ENST00000413716 KCNE1P15382 129 aa12.56□□□□□ -0.4
CCDC88A-204ENST00000413716 NME2P22392 152 aa12.56□□□□□ -0.4
CCDC88A-204ENST00000413716 P2RY14Q15391 338 aa12.56□□□□□ -0.4
CCDC88A-204ENST00000413716 FXNQ16595 210 aa12.56□□□□□ -0.4
CCDC88A-204ENST00000413716 CYP1B1Q16678 543 aa12.56□□□□□ -0.4
CCDC88A-204ENST00000413716 TMPRSS11FQ6ZWK6 438 aa12.56□□□□□ -0.4
CCDC88A-204ENST00000413716 NLGN4XQ8N0W4 816 aa12.56□□□□□ -0.4
CCDC88A-204ENST00000413716 TMEM18Q96B42 140 aa12.56□□□□□ -0.4
CCDC88A-204ENST00000413716 B4GALT6Q9UBX8 382 aa12.56□□□□□ -0.4
CCDC88A-204ENST00000413716 SH2D7A6NKC9 451 aaPredicted RBP12.56□□□□□ -0.4
CCDC88A-204ENST00000413716 AAK1Q2M2I8 961 aa12.56□□□□□ -0.4
CCDC88A-204ENST00000413716 PRAP1Q96NZ9 151 aa12.56□□□□□ -0.4
CCDC88A-204ENST00000413716 FAM234AQ9H0X4 552 aa12.56□□□□□ -0.4
CCDC88A-204ENST00000413716 PCED1AQ9H1Q7 454 aa12.56□□□□□ -0.4
CCDC88A-204ENST00000413716 CABIN1Q9Y6J0 2220 aa12.56□□□□□ -0.4
CCDC88A-204ENST00000413716 TEX50A0A1B0GTY4 177 aa12.56□□□□□ -0.4
CCDC88A-204ENST00000413716 ITGB8P26012 769 aa12.56□□□□□ -0.4
CCDC88A-204ENST00000413716 GDF5P43026 501 aa12.56□□□□□ -0.4
CCDC88A-204ENST00000413716 NNATQ16517 81 aa12.56□□□□□ -0.4
CCDC88A-204ENST00000413716 LRRTM1Q86UE6 522 aa12.56□□□□□ -0.4
CCDC88A-204ENST00000413716 ARHGDIGQ99819 225 aa12.56□□□□□ -0.4
CCDC88A-204ENST00000413716 SUCNR1Q9BXA5 334 aa12.56□□□□□ -0.4
CCDC88A-204ENST00000413716 A0A1W2PPH5 198 aa12.56□□□□□ -0.4
CCDC88A-204ENST00000413716 H7BY64 318 aa12.56□□□□□ -0.4
CCDC88A-204ENST00000413716 AQP7O14520 342 aa12.56□□□□□ -0.4
CCDC88A-204ENST00000413716 BET1O15155 118 aa12.56□□□□□ -0.4
CCDC88A-204ENST00000413716 RPS15P62841 145 aaKnown RBP12.56□□□□□ -0.4
CCDC88A-204ENST00000413716 LSAMPQ13449 338 aa12.56□□□□□ -0.4
CCDC88A-204ENST00000413716 DNAJC19Q96DA6 116 aa12.56□□□□□ -0.4
CCDC88A-204ENST00000413716 C20orf24Q9BUV8 137 aa12.56□□□□□ -0.4
CCDC88A-204ENST00000413716 INPP5EQ9NRR6 644 aa12.56□□□□□ -0.4
CCDC88A-204ENST00000413716 MCTS1Q9ULC4 181 aaKnown RBP12.56□□□□□ -0.4
CCDC88A-204ENST00000413716 CNIH1O95406 144 aa12.56□□□□□ -0.4
CCDC88A-204ENST00000413716 ATP1B3P54709 279 aa12.56□□□□□ -0.4
CCDC88A-204ENST00000413716 RPS26P62854 115 aaKnown RBP12.56□□□□□ -0.4
CCDC88A-204ENST00000413716 LTBQ06643 244 aa12.56□□□□□ -0.4
CCDC88A-204ENST00000413716 KCMF1Q9P0J7 381 aa12.56□□□□□ -0.4
CCDC88A-204ENST00000413716 PRR36Q9H6K5 1346 aa12.55□□□□□ -0.4
CCDC88A-204ENST00000413716 SCAMP2O15127 329 aaKnown RBP12.55□□□□□ -0.4
CCDC88A-204ENST00000413716 STC1P52823 247 aa12.55□□□□□ -0.4
CCDC88A-204ENST00000413716 GDF10P55107 478 aa12.55□□□□□ -0.4
CCDC88A-204ENST00000413716 RELAQ04206 551 aa12.55□□□□□ -0.4
CCDC88A-204ENST00000413716 ZNF620Q6ZNG0 422 aa12.55□□□□□ -0.4
CCDC88A-204ENST00000413716 ZNF551Q7Z340 670 aaPredicted RBP12.55□□□□□ -0.4
CCDC88A-204ENST00000413716 ADIPOR2Q86V24 386 aa12.55□□□□□ -0.4
CCDC88A-204ENST00000413716 ZDHHC7Q9NXF8 308 aa12.55□□□□□ -0.4
CCDC88A-204ENST00000413716 SCN9AQ15858 1988 aa12.55□□□□□ -0.4
CCDC88A-204ENST00000413716 TP53BP1Q12888 1972 aaPredicted RBP12.55□□□□□ -0.4
CCDC88A-204ENST00000413716 ADAMTS4O75173 837 aa12.55□□□□□ -0.4
CCDC88A-204ENST00000413716 SORBS2O94875 1100 aaKnown RBP12.55□□□□□ -0.4
CCDC88A-204ENST00000413716 DPP4P27487 766 aa12.55□□□□□ -0.4
CCDC88A-204ENST00000413716 SUB1P53999 127 aaKnown RBP eCLIP12.55□□□□□ -0.4
CCDC88A-204ENST00000413716 OR52E8Q6IFG1 317 aa12.55□□□□□ -0.4
CCDC88A-204ENST00000413716 RHOUQ7L0Q8 258 aa12.55□□□□□ -0.4
CCDC88A-204ENST00000413716 PIGMQ9H3S5 423 aa12.55□□□□□ -0.4
CCDC88A-204ENST00000413716 POPDC3Q9HBV1 291 aa12.55□□□□□ -0.4
CCDC88A-204ENST00000413716 C8AP07357 584 aa12.55□□□□□ -0.4
CCDC88A-204ENST00000413716 ENPP1P22413 925 aa12.55□□□□□ -0.4
CCDC88A-204ENST00000413716 DMWDQ09019 674 aa12.55□□□□□ -0.4
CCDC88A-204ENST00000413716 SQSTM1Q13501 440 aa12.55□□□□□ -0.4
CCDC88A-204ENST00000413716 OR5I1Q13606 314 aa12.55□□□□□ -0.4
CCDC88A-204ENST00000413716 ZNF239Q16600 458 aaKnown RBP12.55□□□□□ -0.4
CCDC88A-204ENST00000413716 ZNF678Q5SXM1 525 aa12.55□□□□□ -0.4
CCDC88A-204ENST00000413716 CATSPEREQ5SY80 951 aa12.55□□□□□ -0.4
CCDC88A-204ENST00000413716 HAS1Q92839 578 aa12.55□□□□□ -0.4
CCDC88A-204ENST00000413716 ANKMY1Q9P2S6 941 aa12.55□□□□□ -0.4
CCDC88A-204ENST00000413716 ICMTO60725 284 aa12.55□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 23 ms