RNA–Protein interactions for RNA: ENST00000403076.5

SDC1-203, Transcript of syndecan 1, humanhuman

TSL 1 (best) BASIC

Gene SDC1, Length 1,523 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-203ENST00000403076 EIF1P41567 113 aaKnown RBP16.38■□□□□ 0.21
SDC1-203ENST00000403076 MAGEA5P43359 124 aa16.38■□□□□ 0.21
SDC1-203ENST00000403076 IST1P53990 364 aa16.38■□□□□ 0.21
SDC1-203ENST00000403076 DGCR6Q14129 220 aa16.38■□□□□ 0.21
SDC1-203ENST00000403076 EXOC3L2Q2M3D2 409 aa16.38■□□□□ 0.21
SDC1-203ENST00000403076 PLEKHN1Q494U1 663 aaPredicted RBP16.38■□□□□ 0.21
SDC1-203ENST00000403076 SWT1Q5T5J6 900 aaKnown RBP16.38■□□□□ 0.21
SDC1-203ENST00000403076 NKAIN4Q8IVV8 208 aa16.38■□□□□ 0.21
SDC1-203ENST00000403076 TMEM251Q8N6I4 163 aa16.38■□□□□ 0.21
SDC1-203ENST00000403076 OR5M1Q8NGP8 315 aa16.38■□□□□ 0.21
SDC1-203ENST00000403076 MPP4Q96JB8 637 aa16.38■□□□□ 0.21
SDC1-203ENST00000403076 ALPK1Q96QP1 1244 aa16.38■□□□□ 0.21
SDC1-203ENST00000403076 UBQLN3Q9H347 655 aa16.38■□□□□ 0.21
SDC1-203ENST00000403076 ANKRD19PQ9H560 264 aa16.38■□□□□ 0.21
SDC1-203ENST00000403076 ZNF703Q9H7S9 590 aaPredicted RBP16.38■□□□□ 0.21
SDC1-203ENST00000403076 NTN4Q9HB63 628 aa16.38■□□□□ 0.21
SDC1-203ENST00000403076 TMED7Q9Y3B3 224 aa16.38■□□□□ 0.21
SDC1-203ENST00000403076 TRBV4-1A0A0J9YWV2 114 aa16.37■□□□□ 0.21
SDC1-203ENST00000403076 SAC3D1A6NKF1 404 aa16.37■□□□□ 0.21
SDC1-203ENST00000403076 ZIC3O60481 467 aa16.37■□□□□ 0.21
SDC1-203ENST00000403076 GLSO94925 669 aaPredicted RBP16.37■□□□□ 0.21
SDC1-203ENST00000403076 FPR1P21462 350 aa16.37■□□□□ 0.21
SDC1-203ENST00000403076 APOBEC1P41238 236 aaKnown RBP16.37■□□□□ 0.21
SDC1-203ENST00000403076 SLC34A1Q06495 639 aa16.37■□□□□ 0.21
SDC1-203ENST00000403076 GLYR1Q49A26 553 aaPredicted RBP16.37■□□□□ 0.21
SDC1-203ENST00000403076 NADK2Q4G0N4 442 aa16.37■□□□□ 0.21
SDC1-203ENST00000403076 SLC6A19Q695T7 634 aa16.37■□□□□ 0.21
SDC1-203ENST00000403076 ZNF730Q6ZMV8 503 aa16.37■□□□□ 0.21
SDC1-203ENST00000403076 ATG4DQ86TL0 474 aaPredicted RBP16.37■□□□□ 0.21
SDC1-203ENST00000403076 FAM83FQ8NEG4 500 aaPredicted RBP16.37■□□□□ 0.21
SDC1-203ENST00000403076 OR5K1Q8NHB7 308 aa16.37■□□□□ 0.21
SDC1-203ENST00000403076 DHRS1Q96LJ7 313 aa16.37■□□□□ 0.21
SDC1-203ENST00000403076 HS6ST2Q96MM7 605 aa16.37■□□□□ 0.21
SDC1-203ENST00000403076 EPYCQ99645 322 aa16.37■□□□□ 0.21
SDC1-203ENST00000403076 SERINC1Q9NRX5 453 aa16.37■□□□□ 0.21
SDC1-203ENST00000403076 MAN2C1Q9NTJ4 1040 aa16.37■□□□□ 0.21
SDC1-203ENST00000403076 LUZP4Q9P127 313 aa16.37■□□□□ 0.21
SDC1-203ENST00000403076 TFECO14948 347 aaPredicted RBP16.36■□□□□ 0.21
SDC1-203ENST00000403076 LYPD3O95274 346 aa16.36■□□□□ 0.21
SDC1-203ENST00000403076 ZNF24P17028 368 aa16.36■□□□□ 0.21
SDC1-203ENST00000403076 PTNP21246 168 aa16.36■□□□□ 0.21
SDC1-203ENST00000403076 HMGA2P52926 109 aa16.36■□□□□ 0.21
SDC1-203ENST00000403076 FOXK1P85037 733 aa16.36■□□□□ 0.21
SDC1-203ENST00000403076 SLC10A1Q14973 349 aa16.36■□□□□ 0.21
SDC1-203ENST00000403076 TRIP10Q15642 601 aa16.36■□□□□ 0.21
SDC1-203ENST00000403076 HYAL4Q2M3T9 481 aa16.36■□□□□ 0.21
SDC1-203ENST00000403076 SLC25A53Q5H9E4 307 aa16.36■□□□□ 0.21
SDC1-203ENST00000403076 WIPI1Q5MNZ9 446 aaPredicted RBP16.36■□□□□ 0.21
SDC1-203ENST00000403076 FBXW10Q5XX13 1052 aa16.36■□□□□ 0.21
SDC1-203ENST00000403076 PODNL1Q6PEZ8 512 aa16.36■□□□□ 0.21
SDC1-203ENST00000403076 TTC33Q6PID6 262 aaPredicted RBP16.36■□□□□ 0.21
SDC1-203ENST00000403076 GTPBP8Q8N3Z3 284 aaPredicted RBP16.36■□□□□ 0.21
SDC1-203ENST00000403076 EXD3Q8N9H8 876 aa16.36■□□□□ 0.21
SDC1-203ENST00000403076 TEX19Q8NA77 164 aa16.36■□□□□ 0.21
SDC1-203ENST00000403076 ATP6V1C2Q8NEY4 427 aa16.36■□□□□ 0.21
SDC1-203ENST00000403076 POC1BQ8TC44 478 aa16.36■□□□□ 0.21
SDC1-203ENST00000403076 SLC7A13Q8TCU3 470 aa16.36■□□□□ 0.21
SDC1-203ENST00000403076 TMEM255BQ8WV15 326 aa16.36■□□□□ 0.21
SDC1-203ENST00000403076 SDCCAG3Q96C92 435 aa16.36■□□□□ 0.21
SDC1-203ENST00000403076 NPAS1Q99742 590 aa16.36■□□□□ 0.21
SDC1-203ENST00000403076 PRSS27Q9BQR3 290 aa16.36■□□□□ 0.21
SDC1-203ENST00000403076 PIGQQ9BRB3 760 aa16.36■□□□□ 0.21
SDC1-203ENST00000403076 OR2B2Q9GZK3 357 aa16.36■□□□□ 0.21
SDC1-203ENST00000403076 C12orf10Q9HB07 376 aa16.36■□□□□ 0.21
SDC1-203ENST00000403076 QPCTLQ9NXS2 382 aa16.36■□□□□ 0.21
SDC1-203ENST00000403076 LHX6Q9UPM6 363 aa16.36■□□□□ 0.21
SDC1-203ENST00000403076 MRPS18CQ9Y3D5 142 aaKnown RBP16.36■□□□□ 0.21
SDC1-203ENST00000403076 A0A087WUJ7 227 aa16.35■□□□□ 0.21
SDC1-203ENST00000403076 CCNB2O95067 398 aa16.35■□□□□ 0.21
SDC1-203ENST00000403076 NTN1O95631 604 aa16.35■□□□□ 0.21
SDC1-203ENST00000403076 HPNP05981 417 aa16.35■□□□□ 0.21
SDC1-203ENST00000403076 SFTPCP11686 197 aa16.35■□□□□ 0.21
SDC1-203ENST00000403076 ADH6P28332 368 aa16.35■□□□□ 0.21
SDC1-203ENST00000403076 GK3PQ14409 553 aa16.35■□□□□ 0.21
SDC1-203ENST00000403076 LAPTM4AQ15012 233 aa16.35■□□□□ 0.21
SDC1-203ENST00000403076 ZNF800Q2TB10 664 aaPredicted RBP eCLIP16.35■□□□□ 0.21
SDC1-203ENST00000403076 TBPL2Q6SJ96 375 aa16.35■□□□□ 0.21
SDC1-203ENST00000403076 TMEM179BQ7Z7N9 219 aa16.35■□□□□ 0.21
SDC1-203ENST00000403076 ADGRG3Q86Y34 549 aa16.35■□□□□ 0.21
SDC1-203ENST00000403076 ZDHHC13Q8IUH4 622 aa16.35■□□□□ 0.21
SDC1-203ENST00000403076 FAM109AQ8N4B1 249 aa16.35■□□□□ 0.21
SDC1-203ENST00000403076 GIPC3Q8TF64 312 aa16.35■□□□□ 0.21
SDC1-203ENST00000403076 TMEM239Q8WW34 195 aa16.35■□□□□ 0.21
SDC1-203ENST00000403076 ACOT11Q8WXI4 607 aaPredicted RBP16.35■□□□□ 0.21
SDC1-203ENST00000403076 PNPLA2Q96AD5 504 aa16.35■□□□□ 0.21
SDC1-203ENST00000403076 SFXN2Q96NB2 322 aa16.35■□□□□ 0.21
SDC1-203ENST00000403076 DEFB127Q9H1M4 99 aa16.35■□□□□ 0.21
SDC1-203ENST00000403076 PDP1Q9P0J1 537 aaPredicted RBP16.35■□□□□ 0.21
SDC1-203ENST00000403076 CHRNA9Q9UGM1 479 aa16.35■□□□□ 0.21
SDC1-203ENST00000403076 SPIN1Q9Y657 262 aaPredicted RBP16.35■□□□□ 0.21
SDC1-203ENST00000403076 CFAP47Q6ZTR5 3102 aa16.35■□□□□ 0.21
SDC1-203ENST00000403076 MAP1BP46821 2468 aaKnown RBP16.35■□□□□ 0.21
SDC1-203ENST00000403076 A0A087WUU8 490 aa16.35■□□□□ 0.21
SDC1-203ENST00000403076 OR2M5A3KFT3 312 aa16.35■□□□□ 0.21
SDC1-203ENST00000403076 G3V2T6 193 aa16.35■□□□□ 0.21
SDC1-203ENST00000403076 ETV2O00321 342 aaPredicted RBP16.35■□□□□ 0.21
SDC1-203ENST00000403076 SUSD5O60279 629 aa16.35■□□□□ 0.21
SDC1-203ENST00000403076 OR10H3O60404 316 aa16.35■□□□□ 0.21
SDC1-203ENST00000403076 WISP1O95388 367 aa16.35■□□□□ 0.21
SDC1-203ENST00000403076 CELA3AP09093 270 aa16.35■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 60.8 ms