RNA–Protein interactions for RNA: ENST00000401468.7

VPS53-203, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS53, Length 1,269 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-203ENST00000401468 MARVELD2Q8N4S9 558 aa8.33□□□□□ -1.08
VPS53-203ENST00000401468 RNF148Q8N7C7 305 aa8.33□□□□□ -1.08
VPS53-203ENST00000401468 FAM156AQ8NDB6 213 aa8.33□□□□□ -1.08
VPS53-203ENST00000401468 OR2M3Q8NG83 312 aa8.33□□□□□ -1.08
VPS53-203ENST00000401468 GPR32P1Q8NGA4 272 aa8.33□□□□□ -1.08
VPS53-203ENST00000401468 OR5M9Q8NGP3 310 aa8.33□□□□□ -1.08
VPS53-203ENST00000401468 OR52P1PQ8NH57 321 aa8.33□□□□□ -1.08
VPS53-203ENST00000401468 WDR60Q8WVS4 1066 aa8.33□□□□□ -1.08
VPS53-203ENST00000401468 UTP4Q969X6 686 aaKnown RBP8.33□□□□□ -1.08
VPS53-203ENST00000401468 CLPTM1LQ96KA5 538 aa8.33□□□□□ -1.08
VPS53-203ENST00000401468 ZNF597Q96LX8 424 aa8.33□□□□□ -1.08
VPS53-203ENST00000401468 THTPAQ9BU02 230 aa8.33□□□□□ -1.08
VPS53-203ENST00000401468 DOHHQ9BU89 302 aa8.33□□□□□ -1.08
VPS53-203ENST00000401468 TBL1XR1Q9BZK7 514 aa8.33□□□□□ -1.08
VPS53-203ENST00000401468 LAT2Q9GZY6 243 aa8.33□□□□□ -1.08
VPS53-203ENST00000401468 PCDHAC1Q9H158 963 aa8.33□□□□□ -1.08
VPS53-203ENST00000401468 PIF1Q9H611 641 aa8.33□□□□□ -1.08
VPS53-203ENST00000401468 ZNF703Q9H7S9 590 aaPredicted RBP8.33□□□□□ -1.08
VPS53-203ENST00000401468 ZFP64Q9NPA5 681 aa8.33□□□□□ -1.08
VPS53-203ENST00000401468 SDHAF3Q9NRP4 125 aa8.33□□□□□ -1.08
VPS53-203ENST00000401468 ST6GALNAC1Q9NSC7 600 aaPredicted RBP8.33□□□□□ -1.08
VPS53-203ENST00000401468 DCAF13Q9NV06 445 aaKnown RBP8.33□□□□□ -1.08
VPS53-203ENST00000401468 KLRF1Q9NZS2 232 aa8.33□□□□□ -1.08
VPS53-203ENST00000401468 SLC7A8Q9UHI5 535 aa8.33□□□□□ -1.08
VPS53-203ENST00000401468 PACSIN3Q9UKS6 424 aa8.33□□□□□ -1.08
VPS53-203ENST00000401468 BOKQ9UMX3 212 aaPredicted RBP8.33□□□□□ -1.08
VPS53-203ENST00000401468 C15orf41Q9Y2V0 281 aa8.33□□□□□ -1.08
VPS53-203ENST00000401468 SNX13Q9Y5W8 968 aa8.33□□□□□ -1.08
VPS53-203ENST00000401468 SEC23IPQ9Y6Y8 1000 aaKnown RBP8.33□□□□□ -1.08
VPS53-203ENST00000401468 TCRBV5S2A0A599 114 aa8.32□□□□□ -1.08
VPS53-203ENST00000401468 CLDN24A6NM45 220 aa8.32□□□□□ -1.08
VPS53-203ENST00000401468 FAM90A27PA6NNH2 459 aa8.32□□□□□ -1.08
VPS53-203ENST00000401468 C17orf51A8MQB3 221 aa8.32□□□□□ -1.08
VPS53-203ENST00000401468 H3BNH8 94 aa8.32□□□□□ -1.08
VPS53-203ENST00000401468 ZNF264O43296 627 aa8.32□□□□□ -1.08
VPS53-203ENST00000401468 TPST1O60507 370 aa8.32□□□□□ -1.08
VPS53-203ENST00000401468 ADAM11O75078 769 aa8.32□□□□□ -1.08
VPS53-203ENST00000401468 CBR3O75828 277 aa8.32□□□□□ -1.08
VPS53-203ENST00000401468 NTN1O95631 604 aa8.32□□□□□ -1.08
VPS53-203ENST00000401468 CSTAP01040 98 aa8.32□□□□□ -1.08
VPS53-203ENST00000401468 IFNA14P01570 189 aa8.32□□□□□ -1.08
VPS53-203ENST00000401468 HPNP05981 417 aa8.32□□□□□ -1.08
VPS53-203ENST00000401468 UBL4AP11441 157 aa8.32□□□□□ -1.08
VPS53-203ENST00000401468 HPGDP15428 266 aa8.32□□□□□ -1.08
VPS53-203ENST00000401468 AQP1P29972 269 aa8.32□□□□□ -1.08
VPS53-203ENST00000401468 P2RX1P51575 399 aa8.32□□□□□ -1.08
VPS53-203ENST00000401468 ZNF136P52737 540 aa8.32□□□□□ -1.08
VPS53-203ENST00000401468 KCNJ2P63252 427 aa8.32□□□□□ -1.08
VPS53-203ENST00000401468 PLGLB1Q02325 96 aa8.32□□□□□ -1.08
VPS53-203ENST00000401468 RBPJQ06330 500 aa8.32□□□□□ -1.08
VPS53-203ENST00000401468 GANABQ14697 944 aaKnown RBP8.32□□□□□ -1.08
VPS53-203ENST00000401468 DUSP7Q16829 419 aa8.32□□□□□ -1.08
VPS53-203ENST00000401468 TMEM44Q2T9K0 475 aa8.32□□□□□ -1.08
VPS53-203ENST00000401468 GLIPR1L2Q4G1C9 344 aa8.32□□□□□ -1.08
VPS53-203ENST00000401468 CMPK2Q5EBM0 449 aa8.32□□□□□ -1.08
VPS53-203ENST00000401468 SLC25A53Q5H9E4 307 aa8.32□□□□□ -1.08
VPS53-203ENST00000401468 ZNF311Q5JNZ3 666 aa8.32□□□□□ -1.08
VPS53-203ENST00000401468 GLYATQ6IB77 296 aa8.32□□□□□ -1.08
VPS53-203ENST00000401468 CBLN3Q6UW01 205 aa8.32□□□□□ -1.08
VPS53-203ENST00000401468 CCDC71Q8IV32 467 aaPredicted RBP8.32□□□□□ -1.08
VPS53-203ENST00000401468 ZNF440Q8IYI8 595 aa8.32□□□□□ -1.08
VPS53-203ENST00000401468 CLIP4Q8N3C7 705 aa8.32□□□□□ -1.08
VPS53-203ENST00000401468 OR1J4Q8NGS1 313 aa8.32□□□□□ -1.08
VPS53-203ENST00000401468 OR5W2Q8NH69 310 aa8.32□□□□□ -1.08
VPS53-203ENST00000401468 DUSP19Q8WTR2 217 aa8.32□□□□□ -1.08
VPS53-203ENST00000401468 POP5Q969H6 163 aaKnown RBP8.32□□□□□ -1.08
VPS53-203ENST00000401468 ARHGDIGQ99819 225 aa8.32□□□□□ -1.08
VPS53-203ENST00000401468 TTTY12Q9BZ98 90 aa8.32□□□□□ -1.08
VPS53-203ENST00000401468 UCK2Q9BZX2 261 aa8.32□□□□□ -1.08
VPS53-203ENST00000401468 ACKR4Q9NPB9 350 aa8.32□□□□□ -1.08
VPS53-203ENST00000401468 TUBA8Q9NY65 449 aaPredicted RBP8.32□□□□□ -1.08
VPS53-203ENST00000401468 EGFL7Q9UHF1 273 aa8.32□□□□□ -1.08
VPS53-203ENST00000401468 ITGB1BP2Q9UKP3 347 aa8.32□□□□□ -1.08
VPS53-203ENST00000401468 MEMO1Q9Y316 297 aa8.32□□□□□ -1.08
VPS53-203ENST00000401468 CCDC168Q8NDH2 2452 aa8.32□□□□□ -1.08
VPS53-203ENST00000401468 AKAP9Q99996 3911 aa8.32□□□□□ -1.08
VPS53-203ENST00000401468 NPIPA2E9PIF3 369 aa8.31□□□□□ -1.08
VPS53-203ENST00000401468 NPIPA3F8WFD2 350 aa8.31□□□□□ -1.08
VPS53-203ENST00000401468 SCO2O43819 266 aa8.31□□□□□ -1.08
VPS53-203ENST00000401468 ZIC3O60481 467 aa8.31□□□□□ -1.08
VPS53-203ENST00000401468 FMO6PO60774 539 aa8.31□□□□□ -1.08
VPS53-203ENST00000401468 PDE5AO76074 875 aa8.31□□□□□ -1.08
VPS53-203ENST00000401468 IGHG3P01860 377 aa8.31□□□□□ -1.08
VPS53-203ENST00000401468 OPN1SWP03999 348 aa8.31□□□□□ -1.08
VPS53-203ENST00000401468 FESP07332 822 aa8.31□□□□□ -1.08
VPS53-203ENST00000401468 LINGO3P0C6S8 592 aa8.31□□□□□ -1.08
VPS53-203ENST00000401468 RFPL3SP0C7P2 107 aa8.31□□□□□ -1.08
VPS53-203ENST00000401468 TCN1P20061 433 aaPredicted RBP8.31□□□□□ -1.08
VPS53-203ENST00000401468 PSMA4P25789 261 aaKnown RBP8.31□□□□□ -1.08
VPS53-203ENST00000401468 SRD5A2P31213 254 aa8.31□□□□□ -1.08
VPS53-203ENST00000401468 MSX2P35548 267 aaPredicted RBP8.31□□□□□ -1.08
VPS53-203ENST00000401468 SLC6A8P48029 635 aa8.31□□□□□ -1.08
VPS53-203ENST00000401468 CASP6P55212 293 aa8.31□□□□□ -1.08
VPS53-203ENST00000401468 EPS8Q12929 822 aa8.31□□□□□ -1.08
VPS53-203ENST00000401468 GLYR1Q49A26 553 aaPredicted RBP8.31□□□□□ -1.08
VPS53-203ENST00000401468 IQCCQ4KMZ1 466 aa8.31□□□□□ -1.08
VPS53-203ENST00000401468 CYBRD1Q53TN4 286 aa8.31□□□□□ -1.08
VPS53-203ENST00000401468 LSMEM1Q8N8F7 131 aa8.31□□□□□ -1.08
VPS53-203ENST00000401468 FAM98AQ8NCA5 519 aaKnown RBP8.31□□□□□ -1.08
VPS53-203ENST00000401468 B4GALNT2Q8NHY0 566 aa8.31□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 28 ms