RNA–Protein interactions for RNA: ENST00000389040.9

VPS53-202, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best)

Gene VPS53, Length 1,903 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-202ENST00000389040 SSTR4P31391 388 aa9.34□□□□□ -0.91
VPS53-202ENST00000389040 SOX18P35713 384 aa9.34□□□□□ -0.91
VPS53-202ENST00000389040 ENTPD1P49961 510 aa9.34□□□□□ -0.91
VPS53-202ENST00000389040 TAS2R41P59536 307 aa9.34□□□□□ -0.91
VPS53-202ENST00000389040 COX10Q12887 443 aa9.34□□□□□ -0.91
VPS53-202ENST00000389040 CD300LDQ6UXZ3 194 aa9.34□□□□□ -0.91
VPS53-202ENST00000389040 FRRS1Q6ZNA5 592 aa9.34□□□□□ -0.91
VPS53-202ENST00000389040 STX19Q8N4C7 294 aa9.34□□□□□ -0.91
VPS53-202ENST00000389040 TMEM156Q8N614 296 aa9.34□□□□□ -0.91
VPS53-202ENST00000389040 EXD3Q8N9H8 876 aa9.34□□□□□ -0.91
VPS53-202ENST00000389040 SIMC1Q8NDZ2 872 aa9.34□□□□□ -0.91
VPS53-202ENST00000389040 OR4K5Q8NGD3 323 aa9.34□□□□□ -0.91
VPS53-202ENST00000389040 OR52P1PQ8NH57 321 aa9.34□□□□□ -0.91
VPS53-202ENST00000389040 SLC9A6Q92581 669 aa9.34□□□□□ -0.91
VPS53-202ENST00000389040 LCORQ96JN0 433 aaPredicted RBP9.34□□□□□ -0.91
VPS53-202ENST00000389040 VSTM2LQ96N03 204 aa9.34□□□□□ -0.91
VPS53-202ENST00000389040 ITPAQ9BY32 194 aa9.34□□□□□ -0.91
VPS53-202ENST00000389040 PLGRKTQ9HBL7 147 aa9.34□□□□□ -0.91
VPS53-202ENST00000389040 HHATLQ9HCP6 504 aa9.34□□□□□ -0.91
VPS53-202ENST00000389040 KLHL28Q9NXS3 571 aa9.34□□□□□ -0.91
VPS53-202ENST00000389040 MGAQ8IWI9 3026 aa9.33□□□□□ -0.92
VPS53-202ENST00000389040 TRAV17A0A0B4J275 112 aa9.33□□□□□ -0.92
VPS53-202ENST00000389040 EFCAB10A6NFE3 127 aa9.33□□□□□ -0.92
VPS53-202ENST00000389040 FRS3O43559 492 aa9.33□□□□□ -0.92
VPS53-202ENST00000389040 CLPXO76031 633 aa9.33□□□□□ -0.92
VPS53-202ENST00000389040 TP53P04637 393 aaPredicted RBP9.33□□□□□ -0.92
VPS53-202ENST00000389040 CELA2AP08217 269 aa9.33□□□□□ -0.92
VPS53-202ENST00000389040 STSP08842 583 aa9.33□□□□□ -0.92
VPS53-202ENST00000389040 LCN1P31025 176 aa9.33□□□□□ -0.92
VPS53-202ENST00000389040 TGFBR2P37173 567 aa9.33□□□□□ -0.92
VPS53-202ENST00000389040 SNRPGP62308 76 aaKnown RBP9.33□□□□□ -0.92
VPS53-202ENST00000389040 ARG2P78540 354 aa9.33□□□□□ -0.92
VPS53-202ENST00000389040 ALDH6A1Q02252 535 aaKnown RBP9.33□□□□□ -0.92
VPS53-202ENST00000389040 ST3GAL4Q11206 333 aa9.33□□□□□ -0.92
VPS53-202ENST00000389040 INAQ16352 499 aa9.33□□□□□ -0.92
VPS53-202ENST00000389040 DUSP5Q16690 384 aa9.33□□□□□ -0.92
VPS53-202ENST00000389040 ARHGAP11BQ3KRB8 267 aa9.33□□□□□ -0.92
VPS53-202ENST00000389040 C12orf73Q69YU5 71 aa9.33□□□□□ -0.92
VPS53-202ENST00000389040 TYW3Q6IPR3 259 aaKnown RBP9.33□□□□□ -0.92
VPS53-202ENST00000389040 RPUSD3Q6P087 351 aaKnown RBP9.33□□□□□ -0.92
VPS53-202ENST00000389040 C1orf94Q6P1W5 598 aa9.33□□□□□ -0.92
VPS53-202ENST00000389040 CASP12Q6UXS9 341 aa9.33□□□□□ -0.92
VPS53-202ENST00000389040 Q6ZS92 163 aa9.33□□□□□ -0.92
VPS53-202ENST00000389040 ZER1Q7Z7L7 766 aa9.33□□□□□ -0.92
VPS53-202ENST00000389040 ASB15Q8WXK1 588 aa9.33□□□□□ -0.92
VPS53-202ENST00000389040 Q96MT0 163 aa9.33□□□□□ -0.92
VPS53-202ENST00000389040 STACQ99469 402 aa9.33□□□□□ -0.92
VPS53-202ENST00000389040 LMF2Q9BU23 707 aaKnown RBP9.33□□□□□ -0.92
VPS53-202ENST00000389040 MTHFD2LQ9H903 347 aaPredicted RBP9.33□□□□□ -0.92
VPS53-202ENST00000389040 CACYBPQ9HB71 228 aaKnown RBP9.33□□□□□ -0.92
VPS53-202ENST00000389040 CTPS2Q9NRF8 586 aa9.33□□□□□ -0.92
VPS53-202ENST00000389040 DUSP22Q9NRW4 184 aa9.33□□□□□ -0.92
VPS53-202ENST00000389040 CNOT2Q9NZN8 540 aaKnown RBP9.33□□□□□ -0.92
VPS53-202ENST00000389040 AKAP8LQ9ULX6 646 aaKnown RBP eCLIP9.33□□□□□ -0.92
VPS53-202ENST00000389040 B3GNT3Q9Y2A9 372 aa9.33□□□□□ -0.92
VPS53-202ENST00000389040 CHST2Q9Y4C5 530 aa9.33□□□□□ -0.92
VPS53-202ENST00000389040 CLDN24A6NM45 220 aa9.33□□□□□ -0.92
VPS53-202ENST00000389040 MASP2O00187 686 aa9.33□□□□□ -0.92
VPS53-202ENST00000389040 CYP7B1O75881 506 aa9.33□□□□□ -0.92
VPS53-202ENST00000389040 OR2J2O76002 312 aa9.33□□□□□ -0.92
VPS53-202ENST00000389040 INHBBP09529 407 aa9.33□□□□□ -0.92
VPS53-202ENST00000389040 FBXO45P0C2W1 286 aa9.33□□□□□ -0.92
VPS53-202ENST00000389040 ACP2P11117 423 aa9.33□□□□□ -0.92
VPS53-202ENST00000389040 CD36P16671 472 aa9.33□□□□□ -0.92
VPS53-202ENST00000389040 CALRP27797 417 aaKnown RBP9.33□□□□□ -0.92
VPS53-202ENST00000389040 MAP3K8P41279 467 aa9.33□□□□□ -0.92
VPS53-202ENST00000389040 TNFSF10P50591 281 aa9.33□□□□□ -0.92
VPS53-202ENST00000389040 PSMD4P55036 377 aaKnown RBP9.33□□□□□ -0.92
VPS53-202ENST00000389040 KLRB1Q12918 225 aa9.33□□□□□ -0.92
VPS53-202ENST00000389040 TRAM2Q15035 370 aa9.33□□□□□ -0.92
VPS53-202ENST00000389040 MOGQ16653 247 aa9.33□□□□□ -0.92
VPS53-202ENST00000389040 TIGD6Q17RP2 521 aa9.33□□□□□ -0.92
VPS53-202ENST00000389040 TUBA3EQ6PEY2 450 aa9.33□□□□□ -0.92
VPS53-202ENST00000389040 CROCCP3Q8IVE0 287 aa9.33□□□□□ -0.92
VPS53-202ENST00000389040 BEST3Q8N1M1 668 aa9.33□□□□□ -0.92
VPS53-202ENST00000389040 ZNF321PQ8N8H1 164 aa9.33□□□□□ -0.92
VPS53-202ENST00000389040 TRUB1Q8WWH5 349 aaKnown RBP9.33□□□□□ -0.92
VPS53-202ENST00000389040 SLC38A4Q969I6 547 aa9.33□□□□□ -0.92
VPS53-202ENST00000389040 PNPLA2Q96AD5 504 aa9.33□□□□□ -0.92
VPS53-202ENST00000389040 IL4I1Q96RQ9 567 aa9.33□□□□□ -0.92
VPS53-202ENST00000389040 RASL10BQ96S79 203 aa9.33□□□□□ -0.92
VPS53-202ENST00000389040 PRR14Q9BWN1 585 aa9.33□□□□□ -0.92
VPS53-202ENST00000389040 PIGUQ9H490 435 aa9.33□□□□□ -0.92
VPS53-202ENST00000389040 Q9N2J8 555 aa9.33□□□□□ -0.92
VPS53-202ENST00000389040 MKLN1Q9UL63 735 aa9.33□□□□□ -0.92
VPS53-202ENST00000389040 ZNF443Q9Y2A4 671 aaPredicted RBP9.33□□□□□ -0.92
VPS53-202ENST00000389040 TP53TG5Q9Y2B4 290 aa9.33□□□□□ -0.92
VPS53-202ENST00000389040 IFT52Q9Y366 437 aa9.33□□□□□ -0.92
VPS53-202ENST00000389040 WDR45Q9Y484 360 aa9.33□□□□□ -0.92
VPS53-202ENST00000389040 ANKRD33BA6NCL7 494 aa9.32□□□□□ -0.92
VPS53-202ENST00000389040 CPSF4LA6NMK7 179 aaKnown RBP9.32□□□□□ -0.92
VPS53-202ENST00000389040 TP53I11O14683 189 aa9.32□□□□□ -0.92
VPS53-202ENST00000389040 ENTPD6O75354 484 aa9.32□□□□□ -0.92
VPS53-202ENST00000389040 WDPCPO95876 746 aa9.32□□□□□ -0.92
VPS53-202ENST00000389040 GUSBP08236 651 aa9.32□□□□□ -0.92
VPS53-202ENST00000389040 ALOX5P09917 674 aa9.32□□□□□ -0.92
VPS53-202ENST00000389040 ADORA3P0DMS8 318 aa9.32□□□□□ -0.92
VPS53-202ENST00000389040 CT45A8P0DMV1 189 aa9.32□□□□□ -0.92
VPS53-202ENST00000389040 CT45A9P0DMV2 189 aa9.32□□□□□ -0.92
VPS53-202ENST00000389040 PIPP12273 146 aaPredicted RBP9.32□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 37.2 ms