RNA–Protein interactions for RNA: ENST00000375405.7

SCN1A-202, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS P3 TSL 5 BASIC

Gene SCN1A, Length 8,097 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-202ENST00000375405 EPHA2P29317 976 aa4.37□□□□□ -1.71
SCN1A-202ENST00000375405 NR4A2P43354 598 aa4.37□□□□□ -1.71
SCN1A-202ENST00000375405 RPS10P46783 165 aaKnown RBP4.37□□□□□ -1.71
SCN1A-202ENST00000375405 RRADP55042 308 aa4.37□□□□□ -1.71
SCN1A-202ENST00000375405 RPS23P62266 143 aaKnown RBP4.37□□□□□ -1.71
SCN1A-202ENST00000375405 SERTAD2Q14140 314 aa4.37□□□□□ -1.71
SCN1A-202ENST00000375405 PRTGQ2VWP7 1150 aa4.37□□□□□ -1.71
SCN1A-202ENST00000375405 HENMT1Q5T8I9 393 aaKnown RBP4.37□□□□□ -1.71
SCN1A-202ENST00000375405 TMEM268Q5VZI3 342 aa4.37□□□□□ -1.71
SCN1A-202ENST00000375405 ZNF776Q68DI1 518 aaPredicted RBP4.37□□□□□ -1.71
SCN1A-202ENST00000375405 GLYATQ6IB77 296 aa4.37□□□□□ -1.71
SCN1A-202ENST00000375405 OR4A47Q6IF82 309 aa4.37□□□□□ -1.71
SCN1A-202ENST00000375405 UNQ9370/PRO34162Q6UXP9 181 aa4.37□□□□□ -1.71
SCN1A-202ENST00000375405 CPNE9Q8IYJ1 553 aa4.37□□□□□ -1.71
SCN1A-202ENST00000375405 OR1N2Q8NGR9 330 aa4.37□□□□□ -1.71
SCN1A-202ENST00000375405 BMFQ96LC9 184 aa4.37□□□□□ -1.71
SCN1A-202ENST00000375405 MRPL57Q9BQC6 102 aaKnown RBP4.37□□□□□ -1.71
SCN1A-202ENST00000375405 DOHHQ9BU89 302 aa4.37□□□□□ -1.71
SCN1A-202ENST00000375405 PINK1Q9BXM7 581 aa4.37□□□□□ -1.71
SCN1A-202ENST00000375405 PTTG3PQ9NZH4 202 aa4.37□□□□□ -1.71
SCN1A-202ENST00000375405 SPTBN1Q01082 2364 aaKnown RBP4.37□□□□□ -1.71
SCN1A-202ENST00000375405 ASTN1O14525 1302 aa4.37□□□□□ -1.71
SCN1A-202ENST00000375405 ZNF608Q9ULD9 1512 aaPredicted RBP4.37□□□□□ -1.71
SCN1A-202ENST00000375405 TMEM150BA6NC51 233 aa4.37□□□□□ -1.71
SCN1A-202ENST00000375405 PPP5D1E7EU14 171 aa4.37□□□□□ -1.71
SCN1A-202ENST00000375405 OR2F2O95006 317 aa4.37□□□□□ -1.71
SCN1A-202ENST00000375405 HLA-EP13747 358 aa4.37□□□□□ -1.71
SCN1A-202ENST00000375405 GZMKP49863 264 aa4.37□□□□□ -1.71
SCN1A-202ENST00000375405 WNT7BP56706 349 aa4.37□□□□□ -1.71
SCN1A-202ENST00000375405 CSNK1G2P78368 415 aa4.37□□□□□ -1.71
SCN1A-202ENST00000375405 TNK1Q13470 666 aa4.37□□□□□ -1.71
SCN1A-202ENST00000375405 KCNC3Q14003 757 aa4.37□□□□□ -1.71
SCN1A-202ENST00000375405 LDB1Q86U70 411 aaPredicted RBP4.37□□□□□ -1.71
SCN1A-202ENST00000375405 PARP16Q8N5Y8 322 aa4.37□□□□□ -1.71
SCN1A-202ENST00000375405 PAQR8Q8TEZ7 354 aa4.37□□□□□ -1.71
SCN1A-202ENST00000375405 ZNF514Q96K75 400 aaPredicted RBP4.37□□□□□ -1.71
SCN1A-202ENST00000375405 LINC00052Q96N35 136 aa4.37□□□□□ -1.71
SCN1A-202ENST00000375405 ZNF599Q96NL3 588 aa4.37□□□□□ -1.71
SCN1A-202ENST00000375405 SOX7Q9BT81 388 aa4.37□□□□□ -1.71
SCN1A-202ENST00000375405 LRFN3Q9BTN0 628 aa4.37□□□□□ -1.71
SCN1A-202ENST00000375405 FUCA2Q9BTY2 467 aa4.37□□□□□ -1.71
SCN1A-202ENST00000375405 BCO1Q9HAY6 547 aa4.37□□□□□ -1.71
SCN1A-202ENST00000375405 SEPSECSQ9HD40 501 aaKnown RBP4.37□□□□□ -1.71
SCN1A-202ENST00000375405 RXFP3Q9NSD7 469 aa4.37□□□□□ -1.71
SCN1A-202ENST00000375405 FBXO4Q9UKT5 387 aa4.37□□□□□ -1.71
SCN1A-202ENST00000375405 SLC5A6Q9Y289 635 aa4.37□□□□□ -1.71
SCN1A-202ENST00000375405 ARL6IP5O75915 188 aa4.37□□□□□ -1.71
SCN1A-202ENST00000375405 TSPAN13O95857 204 aa4.37□□□□□ -1.71
SCN1A-202ENST00000375405 WNT11O96014 354 aa4.37□□□□□ -1.71
SCN1A-202ENST00000375405 HMGN1P05114 100 aa4.37□□□□□ -1.71
SCN1A-202ENST00000375405 ATXN1LP0C7T5 689 aaKnown RBP4.37□□□□□ -1.71
SCN1A-202ENST00000375405 GNAZP19086 355 aa4.37□□□□□ -1.71
SCN1A-202ENST00000375405 CDX1P47902 265 aaPredicted RBP4.37□□□□□ -1.71
SCN1A-202ENST00000375405 NHLH1Q02575 133 aa4.37□□□□□ -1.71
SCN1A-202ENST00000375405 NHLH2Q02577 135 aa4.37□□□□□ -1.71
SCN1A-202ENST00000375405 ALKBH1Q13686 389 aaKnown RBP4.37□□□□□ -1.71
SCN1A-202ENST00000375405 HSF5Q4G112 596 aaPredicted RBP4.37□□□□□ -1.71
SCN1A-202ENST00000375405 PRAMEF9Q5VWM5 478 aa4.37□□□□□ -1.71
SCN1A-202ENST00000375405 DRICH1Q6PGQ1 229 aaPredicted RBP4.37□□□□□ -1.71
SCN1A-202ENST00000375405 UGT2A3Q6UWM9 527 aa4.37□□□□□ -1.71
SCN1A-202ENST00000375405 UNC5DQ6UXZ4 953 aa4.37□□□□□ -1.71
SCN1A-202ENST00000375405 MEPCEQ7L2J0 689 aaKnown RBP4.37□□□□□ -1.71
SCN1A-202ENST00000375405 CISD2Q8N5K1 135 aaKnown RBP4.37□□□□□ -1.71
SCN1A-202ENST00000375405 NAT8LQ8N9F0 302 aa4.37□□□□□ -1.71
SCN1A-202ENST00000375405 EID2BQ96D98 161 aa4.37□□□□□ -1.71
SCN1A-202ENST00000375405 VGLL1Q99990 258 aa4.37□□□□□ -1.71
SCN1A-202ENST00000375405 PCED1AQ9H1Q7 454 aa4.37□□□□□ -1.71
SCN1A-202ENST00000375405 EPHX3Q9H6B9 360 aa4.37□□□□□ -1.71
SCN1A-202ENST00000375405 HINT3Q9NQE9 182 aaKnown RBP4.37□□□□□ -1.71
SCN1A-202ENST00000375405 ZDHHC7Q9NXF8 308 aa4.37□□□□□ -1.71
SCN1A-202ENST00000375405 KCND3Q9UK17 655 aa4.37□□□□□ -1.71
SCN1A-202ENST00000375405 NPC1L1Q9UHC9 1359 aa4.37□□□□□ -1.71
SCN1A-202ENST00000375405 ARHGEF40Q8TER5 1519 aa4.37□□□□□ -1.71
SCN1A-202ENST00000375405 SCN9AQ15858 1988 aa4.37□□□□□ -1.71
SCN1A-202ENST00000375405 A0A1B0GUH1 482 aa4.37□□□□□ -1.71
SCN1A-202ENST00000375405 HACD1B0YJ81 288 aa4.37□□□□□ -1.71
SCN1A-202ENST00000375405 J3KR12 359 aa4.37□□□□□ -1.71
SCN1A-202ENST00000375405 FABP7O15540 132 aa4.37□□□□□ -1.71
SCN1A-202ENST00000375405 CBR3O75828 277 aa4.37□□□□□ -1.71
SCN1A-202ENST00000375405 NKX2-2O95096 273 aa4.37□□□□□ -1.71
SCN1A-202ENST00000375405 SPDEFO95238 335 aa4.37□□□□□ -1.71
SCN1A-202ENST00000375405 MPIG6BO95866 241 aa4.37□□□□□ -1.71
SCN1A-202ENST00000375405 BLVRBP30043 206 aaPredicted RBP4.37□□□□□ -1.71
SCN1A-202ENST00000375405 LASP1Q14847 261 aaKnown RBP4.37□□□□□ -1.71
SCN1A-202ENST00000375405 MOGQ16653 247 aa4.37□□□□□ -1.71
SCN1A-202ENST00000375405 TMEM44Q2T9K0 475 aa4.37□□□□□ -1.71
SCN1A-202ENST00000375405 DEFB121Q5J5C9 76 aa4.37□□□□□ -1.71
SCN1A-202ENST00000375405 CELF3Q5SZQ8 465 aaKnown RBP4.37□□□□□ -1.71
SCN1A-202ENST00000375405 PMS2CLQ68D20 193 aa4.37□□□□□ -1.71
SCN1A-202ENST00000375405 IDO2Q6ZQW0 420 aa4.37□□□□□ -1.71
SCN1A-202ENST00000375405 MISPQ8IVT2 679 aa4.37□□□□□ -1.71
SCN1A-202ENST00000375405 KLHDC1Q8N7A1 406 aa4.37□□□□□ -1.71
SCN1A-202ENST00000375405 TMEM217Q8N7C4 229 aa4.37□□□□□ -1.71
SCN1A-202ENST00000375405 OR8J3Q8NGG0 315 aa4.37□□□□□ -1.71
SCN1A-202ENST00000375405 OR1L4Q8NGR5 311 aa4.37□□□□□ -1.71
SCN1A-202ENST00000375405 HSD17B8Q92506 261 aa4.37□□□□□ -1.71
SCN1A-202ENST00000375405 OSTF1Q92882 214 aa4.37□□□□□ -1.71
SCN1A-202ENST00000375405 TSACCQ96A04 125 aaPredicted RBP4.37□□□□□ -1.71
SCN1A-202ENST00000375405 ELP4Q96EB1 424 aa4.37□□□□□ -1.71
SCN1A-202ENST00000375405 PEX11GQ96HA9 241 aa4.37□□□□□ -1.71
Retrieved 100 of 20,778 RNA–protein pairs in 27.8 ms