RNA–Protein interactions for RNA: ENST00000375299.7

UPF3A-202, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF3A, Length 2,387 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-202ENST00000375299 HTR2AP28223 471 aa19.56■□□□□ 0.72
UPF3A-202ENST00000375299 MAP2K6P52564 334 aa19.56■□□□□ 0.72
UPF3A-202ENST00000375299 GARNL3Q5VVW2 1013 aa19.56■□□□□ 0.72
UPF3A-202ENST00000375299 OR13C2Q8NGS9 318 aa19.56■□□□□ 0.72
UPF3A-202ENST00000375299 ZNF671Q8TAW3 534 aa19.56■□□□□ 0.72
UPF3A-202ENST00000375299 WFIKKN2Q8TEU8 576 aa19.56■□□□□ 0.72
UPF3A-202ENST00000375299 MS4A4EQ96PG1 132 aa19.56■□□□□ 0.72
UPF3A-202ENST00000375299 MFRPQ9BY79 579 aa19.56■□□□□ 0.72
UPF3A-202ENST00000375299 REG4Q9BYZ8 158 aa19.56■□□□□ 0.72
UPF3A-202ENST00000375299 MRPS30Q9NP92 439 aaKnown RBP19.56■□□□□ 0.72
UPF3A-202ENST00000375299 RIIAD1A6NNX1 92 aa19.56■□□□□ 0.72
UPF3A-202ENST00000375299 ITGA10O75578 1167 aa19.56■□□□□ 0.72
UPF3A-202ENST00000375299 TSPAN9O75954 239 aa19.56■□□□□ 0.72
UPF3A-202ENST00000375299 AGR2O95994 175 aa19.56■□□□□ 0.72
UPF3A-202ENST00000375299 ALDOBP05062 364 aa19.56■□□□□ 0.72
UPF3A-202ENST00000375299 TYRP1P17643 537 aa19.56■□□□□ 0.72
UPF3A-202ENST00000375299 CRMP1Q14194 572 aa19.56■□□□□ 0.72
UPF3A-202ENST00000375299 FAM122CQ6P4D5 195 aa19.56■□□□□ 0.72
UPF3A-202ENST00000375299 KIAA1324Q6UXG2 1013 aaKnown RBP19.56■□□□□ 0.72
UPF3A-202ENST00000375299 C3P1Q6ZMU1 363 aa19.56■□□□□ 0.72
UPF3A-202ENST00000375299 LINGO2Q7L985 606 aa19.56■□□□□ 0.72
UPF3A-202ENST00000375299 OR7G2Q8NG99 324 aa19.56■□□□□ 0.72
UPF3A-202ENST00000375299 CMTM3Q96MX0 182 aa19.56■□□□□ 0.72
UPF3A-202ENST00000375299 SFXN2Q96NB2 322 aa19.56■□□□□ 0.72
UPF3A-202ENST00000375299 LGR4Q9BXB1 951 aa19.56■□□□□ 0.72
UPF3A-202ENST00000375299 OR10A4Q9H209 315 aa19.56■□□□□ 0.72
UPF3A-202ENST00000375299 SLC6A20Q9NP91 592 aa19.56■□□□□ 0.72
UPF3A-202ENST00000375299 HAO2Q9NYQ3 351 aa19.56■□□□□ 0.72
UPF3A-202ENST00000375299 RABL2AQ9UBK7 228 aaPredicted RBP19.56■□□□□ 0.72
UPF3A-202ENST00000375299 RABL2BQ9UNT1 228 aa19.56■□□□□ 0.72
UPF3A-202ENST00000375299 AK6Q9Y3D8 172 aaKnown RBP19.56■□□□□ 0.72
UPF3A-202ENST00000375299 KCNMB2Q9Y691 235 aa19.56■□□□□ 0.72
UPF3A-202ENST00000375299 SERPINI2O75830 405 aa19.55■□□□□ 0.72
UPF3A-202ENST00000375299 PCCBP05166 539 aa19.55■□□□□ 0.72
UPF3A-202ENST00000375299 LINC00271P0C7V0 271 aa19.55■□□□□ 0.72
UPF3A-202ENST00000375299 CSF2RAP15509 400 aa19.55■□□□□ 0.72
UPF3A-202ENST00000375299 GDI2P50395 445 aaKnown RBP19.55■□□□□ 0.72
UPF3A-202ENST00000375299 RAB28P51157 221 aa19.55■□□□□ 0.72
UPF3A-202ENST00000375299 CDK3Q00526 305 aa19.55■□□□□ 0.72
UPF3A-202ENST00000375299 MLF2Q15773 248 aaPredicted RBP19.55■□□□□ 0.72
UPF3A-202ENST00000375299 ARHGAP11BQ3KRB8 267 aa19.55■□□□□ 0.72
UPF3A-202ENST00000375299 TMEM81Q6P7N7 255 aa19.55■□□□□ 0.72
UPF3A-202ENST00000375299 OVCH1Q7RTY7 1134 aa19.55■□□□□ 0.72
UPF3A-202ENST00000375299 NRROSQ86YC3 692 aa19.55■□□□□ 0.72
UPF3A-202ENST00000375299 CMTM4Q8IZR5 234 aa19.55■□□□□ 0.72
UPF3A-202ENST00000375299 HDDC3Q8N4P3 179 aa19.55■□□□□ 0.72
UPF3A-202ENST00000375299 SLC2A12Q8TD20 617 aa19.55■□□□□ 0.72
UPF3A-202ENST00000375299 OTUB2Q96DC9 234 aa19.55■□□□□ 0.72
UPF3A-202ENST00000375299 LINC00052Q96N35 136 aa19.55■□□□□ 0.72
UPF3A-202ENST00000375299 SDHAF2Q9NX18 166 aa19.55■□□□□ 0.72
UPF3A-202ENST00000375299 AKAP7Q9P0M2 348 aaPredicted RBP19.55■□□□□ 0.72
UPF3A-202ENST00000375299 MGAT4CQ9UBM8 478 aa19.55■□□□□ 0.72
UPF3A-202ENST00000375299 FBXL4Q9UKA2 621 aa19.55■□□□□ 0.72
UPF3A-202ENST00000375299 SIGLEC7Q9Y286 467 aa19.55■□□□□ 0.72
UPF3A-202ENST00000375299 NAP1L6A6NFF2 107 aa19.55■□□□□ 0.72
UPF3A-202ENST00000375299 OGG1O15527 345 aa19.55■□□□□ 0.72
UPF3A-202ENST00000375299 ZNF749O43361 778 aa19.55■□□□□ 0.72
UPF3A-202ENST00000375299 LYPD3O95274 346 aa19.55■□□□□ 0.72
UPF3A-202ENST00000375299 ECDO95905 644 aaPredicted RBP19.55■□□□□ 0.72
UPF3A-202ENST00000375299 UCHL1P09936 223 aa19.55■□□□□ 0.72
UPF3A-202ENST00000375299 ITGB8P26012 769 aa19.55■□□□□ 0.72
UPF3A-202ENST00000375299 DUSP8Q13202 625 aa19.55■□□□□ 0.72
UPF3A-202ENST00000375299 DHCR24Q15392 516 aa19.55■□□□□ 0.72
UPF3A-202ENST00000375299 OR1Q1Q15612 314 aa19.55■□□□□ 0.72
UPF3A-202ENST00000375299 TP53I3Q53FA7 332 aa19.55■□□□□ 0.72
UPF3A-202ENST00000375299 TMEM255AQ5JRV8 349 aa19.55■□□□□ 0.72
UPF3A-202ENST00000375299 ELFN2Q5R3F8 820 aa19.55■□□□□ 0.72
UPF3A-202ENST00000375299 C12orf40Q86WS4 652 aa19.55■□□□□ 0.72
UPF3A-202ENST00000375299 RFLNBQ8N5W9 214 aa19.55■□□□□ 0.72
UPF3A-202ENST00000375299 CYB561A3Q8NBI2 242 aa19.55■□□□□ 0.72
UPF3A-202ENST00000375299 SMIM19Q96E16 107 aa19.55■□□□□ 0.72
UPF3A-202ENST00000375299 KLHL15Q96M94 604 aa19.55■□□□□ 0.72
UPF3A-202ENST00000375299 ZNF578Q96N58 590 aaPredicted RBP19.55■□□□□ 0.72
UPF3A-202ENST00000375299 INSM2Q96T92 566 aaPredicted RBP19.55■□□□□ 0.72
UPF3A-202ENST00000375299 TTTY10Q9BZA0 68 aa19.55■□□□□ 0.72
UPF3A-202ENST00000375299 NUMA1Q14980 2115 aa19.54■□□□□ 0.72
UPF3A-202ENST00000375299 TBC1D3KA0A087X1G2 549 aa19.54■□□□□ 0.72
UPF3A-202ENST00000375299 TBC1D3BA6NDS4 549 aa19.54■□□□□ 0.72
UPF3A-202ENST00000375299 TBC1D3FA6NER0 549 aaPredicted RBP19.54■□□□□ 0.72
UPF3A-202ENST00000375299 ATP1B1P05026 303 aa19.54■□□□□ 0.72
UPF3A-202ENST00000375299 THBS1P07996 1170 aa19.54■□□□□ 0.72
UPF3A-202ENST00000375299 ADRB1P08588 477 aa19.54■□□□□ 0.72
UPF3A-202ENST00000375299 GKN3PP0CG01 181 aa19.54■□□□□ 0.72
UPF3A-202ENST00000375299 CCL5P13501 91 aa19.54■□□□□ 0.72
UPF3A-202ENST00000375299 ZNF3P17036 446 aa19.54■□□□□ 0.72
UPF3A-202ENST00000375299 CXCL2P19875 107 aa19.54■□□□□ 0.72
UPF3A-202ENST00000375299 NDUFS1P28331 727 aa19.54■□□□□ 0.72
UPF3A-202ENST00000375299 CDK5R1Q15078 307 aa19.54■□□□□ 0.72
UPF3A-202ENST00000375299 FNDC3BQ53EP0 1204 aaKnown RBP19.54■□□□□ 0.72
UPF3A-202ENST00000375299 TBC1D3GQ6DHY5 549 aa19.54■□□□□ 0.72
UPF3A-202ENST00000375299 FAM198BQ6UWH4 519 aa19.54■□□□□ 0.72
UPF3A-202ENST00000375299 TMPRSS11FQ6ZWK6 438 aa19.54■□□□□ 0.72
UPF3A-202ENST00000375299 ESX1Q8N693 406 aa19.54■□□□□ 0.72
UPF3A-202ENST00000375299 PIGKQ92643 395 aa19.54■□□□□ 0.72
UPF3A-202ENST00000375299 ELMOD3Q96FG2 381 aa19.54■□□□□ 0.72
UPF3A-202ENST00000375299 PIPOXQ9P0Z9 390 aa19.54■□□□□ 0.72
UPF3A-202ENST00000375299 APOBEC3BQ9UH17 382 aaKnown RBP19.54■□□□□ 0.72
UPF3A-202ENST00000375299 DENND4AQ7Z401 1863 aa19.54■□□□□ 0.72
UPF3A-202ENST00000375299 PLSCR5A0PG75 271 aa19.54■□□□□ 0.72
UPF3A-202ENST00000375299 MFSD2BA6NFX1 497 aa19.54■□□□□ 0.72
Retrieved 100 of 20,778 RNA–protein pairs in 22.4 ms