RNA–Protein interactions for RNA: ENST00000355477.10

CLN3-202, Transcript of CLN3, battenin, humanhuman

TSL 1 (best) BASIC

Gene CLN3, Length 1,173 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-202ENST00000355477 C6orf10Q5SRN2 563 aa16.38■□□□□ 0.21
CLN3-202ENST00000355477 C3orf33Q6P1S2 294 aa16.38■□□□□ 0.21
CLN3-202ENST00000355477 SLC2A7Q6PXP3 512 aa16.38■□□□□ 0.21
CLN3-202ENST00000355477 NUFIP2Q7Z417 695 aaKnown RBP16.38■□□□□ 0.21
CLN3-202ENST00000355477 TUSC5Q8IXB3 177 aa16.38■□□□□ 0.21
CLN3-202ENST00000355477 ARFGAP2Q8N6H7 521 aa16.38■□□□□ 0.21
CLN3-202ENST00000355477 ZNF563Q8TA94 476 aa16.38■□□□□ 0.21
CLN3-202ENST00000355477 NINJ1Q92982 152 aa16.38■□□□□ 0.21
CLN3-202ENST00000355477 MED18Q9BUE0 208 aa16.38■□□□□ 0.21
CLN3-202ENST00000355477 CCDC28BQ9BUN5 200 aa16.38■□□□□ 0.21
CLN3-202ENST00000355477 PAIP1Q9H074 479 aaKnown RBP16.38■□□□□ 0.21
CLN3-202ENST00000355477 EXOSC3Q9NQT5 275 aaKnown RBP16.38■□□□□ 0.21
CLN3-202ENST00000355477 CTPS2Q9NRF8 586 aa16.38■□□□□ 0.21
CLN3-202ENST00000355477 ING1Q9UK53 422 aaPredicted RBP16.38■□□□□ 0.21
CLN3-202ENST00000355477 PCDHB14Q9Y5E9 798 aa16.38■□□□□ 0.21
CLN3-202ENST00000355477 UQCRHLA0A096LP55 91 aa16.37■□□□□ 0.21
CLN3-202ENST00000355477 DEFB108AA8MXU0 73 aa16.37■□□□□ 0.21
CLN3-202ENST00000355477 SASH3O75995 380 aa16.37■□□□□ 0.21
CLN3-202ENST00000355477 PRKD3O94806 890 aa16.37■□□□□ 0.21
CLN3-202ENST00000355477 GOSR1O95249 250 aa16.37■□□□□ 0.21
CLN3-202ENST00000355477 CD1EP15812 388 aa16.37■□□□□ 0.21
CLN3-202ENST00000355477 HOXB9P17482 250 aaPredicted RBP16.37■□□□□ 0.21
CLN3-202ENST00000355477 MAGEA8P43361 318 aa16.37■□□□□ 0.21
CLN3-202ENST00000355477 IDH2P48735 452 aaKnown RBP16.37■□□□□ 0.21
CLN3-202ENST00000355477 STAC2Q6ZMT1 411 aa16.37■□□□□ 0.21
CLN3-202ENST00000355477 CMIPQ8IY22 773 aa16.37■□□□□ 0.21
CLN3-202ENST00000355477 GOLGA6L1Q8N7Z2 621 aa16.37■□□□□ 0.21
CLN3-202ENST00000355477 SLC38A5Q8WUX1 472 aa16.37■□□□□ 0.21
CLN3-202ENST00000355477 WDR60Q8WVS4 1066 aa16.37■□□□□ 0.21
CLN3-202ENST00000355477 CKAP2Q8WWK9 683 aa16.37■□□□□ 0.21
CLN3-202ENST00000355477 ZC3HAV1LQ96H79 300 aaKnown RBP16.37■□□□□ 0.21
CLN3-202ENST00000355477 SERINC1Q9NRX5 453 aa16.37■□□□□ 0.21
CLN3-202ENST00000355477 ARGLU1Q9NWB6 273 aaPredicted RBP16.37■□□□□ 0.21
CLN3-202ENST00000355477 KLHL13Q9P2N7 655 aa16.37■□□□□ 0.21
CLN3-202ENST00000355477 FLNAP21333 2647 aaKnown RBP16.37■□□□□ 0.21
CLN3-202ENST00000355477 SMAD9O15198 467 aaKnown RBP16.36■□□□□ 0.21
CLN3-202ENST00000355477 DBIP07108 87 aaKnown RBP16.36■□□□□ 0.21
CLN3-202ENST00000355477 THBDP07204 575 aa16.36■□□□□ 0.21
CLN3-202ENST00000355477 IL7RP16871 459 aa16.36■□□□□ 0.21
CLN3-202ENST00000355477 CRYGSP22914 178 aa16.36■□□□□ 0.21
CLN3-202ENST00000355477 APOBEC1P41238 236 aaKnown RBP16.36■□□□□ 0.21
CLN3-202ENST00000355477 DIO1P49895 249 aa16.36■□□□□ 0.21
CLN3-202ENST00000355477 DSTNP60981 165 aa16.36■□□□□ 0.21
CLN3-202ENST00000355477 STX1BP61266 288 aa16.36■□□□□ 0.21
CLN3-202ENST00000355477 SYT14P1Q58G82 188 aa16.36■□□□□ 0.21
CLN3-202ENST00000355477 TMEM201Q5SNT2 666 aa16.36■□□□□ 0.21
CLN3-202ENST00000355477 MRPL2Q5T653 305 aaKnown RBP16.36■□□□□ 0.21
CLN3-202ENST00000355477 BLOC1S3Q6QNY0 202 aa16.36■□□□□ 0.21
CLN3-202ENST00000355477 PAMR1Q6UXH9 720 aa16.36■□□□□ 0.21
CLN3-202ENST00000355477 TMPPEQ6ZT21 453 aa16.36■□□□□ 0.21
CLN3-202ENST00000355477 GRINAQ7Z429 371 aa16.36■□□□□ 0.21
CLN3-202ENST00000355477 VRK2Q86Y07 508 aa16.36■□□□□ 0.21
CLN3-202ENST00000355477 ADGRG3Q86Y34 549 aa16.36■□□□□ 0.21
CLN3-202ENST00000355477 PMM1Q92871 262 aa16.36■□□□□ 0.21
CLN3-202ENST00000355477 DNAJA3Q96EY1 480 aa16.36■□□□□ 0.21
CLN3-202ENST00000355477 SLC52A3Q9NQ40 469 aa16.36■□□□□ 0.21
CLN3-202ENST00000355477 RLIMQ9NVW2 624 aa16.36■□□□□ 0.21
CLN3-202ENST00000355477 ZNF226Q9NYT6 803 aa16.36■□□□□ 0.21
CLN3-202ENST00000355477 SLAMF8Q9P0V8 285 aa16.36■□□□□ 0.21
CLN3-202ENST00000355477 P2RX2Q9UBL9 471 aa16.36■□□□□ 0.21
CLN3-202ENST00000355477 DSPPQ9NZW4 1301 aa16.36■□□□□ 0.21
CLN3-202ENST00000355477 DSCAMO60469 2012 aa16.36■□□□□ 0.21
CLN3-202ENST00000355477 BCHEP06276 602 aa16.35■□□□□ 0.21
CLN3-202ENST00000355477 YES1P07947 543 aa16.35■□□□□ 0.21
CLN3-202ENST00000355477 NUDT7P0C024 238 aa16.35■□□□□ 0.21
CLN3-202ENST00000355477 DNASE1P24855 282 aa16.35■□□□□ 0.21
CLN3-202ENST00000355477 RPS26P11Q5JNZ5 115 aaPredicted RBP16.35■□□□□ 0.21
CLN3-202ENST00000355477 BEND4Q6ZU67 534 aa16.35■□□□□ 0.21
CLN3-202ENST00000355477 PEX5LQ8IYB4 626 aa16.35■□□□□ 0.21
CLN3-202ENST00000355477 SLC43A2Q8N370 569 aa16.35■□□□□ 0.21
CLN3-202ENST00000355477 ZNF775Q96BV0 537 aaPredicted RBP16.35■□□□□ 0.21
CLN3-202ENST00000355477 THOC1Q96FV9 657 aaKnown RBP16.35■□□□□ 0.21
CLN3-202ENST00000355477 ARL5BQ96KC2 179 aa16.35■□□□□ 0.21
CLN3-202ENST00000355477 MAGEB18Q96M61 343 aa16.35■□□□□ 0.21
CLN3-202ENST00000355477 FOXC2Q99958 501 aa16.35■□□□□ 0.21
CLN3-202ENST00000355477 PSD2Q9BQI7 771 aa16.35■□□□□ 0.21
CLN3-202ENST00000355477 OR11A1Q9GZK7 315 aa16.35■□□□□ 0.21
CLN3-202ENST00000355477 GP6Q9HCN6 339 aa16.35■□□□□ 0.21
CLN3-202ENST00000355477 SLC25A37Q9NYZ2 338 aa16.35■□□□□ 0.21
CLN3-202ENST00000355477 CCDC167Q9P0B6 97 aa16.35■□□□□ 0.21
CLN3-202ENST00000355477 CHRNA9Q9UGM1 479 aa16.35■□□□□ 0.21
CLN3-202ENST00000355477 ARID1AO14497 2285 aa16.35■□□□□ 0.21
CLN3-202ENST00000355477 RAI1Q7Z5J4 1906 aaPredicted RBP16.35■□□□□ 0.21
CLN3-202ENST00000355477 A0A096LPI6 279 aa16.34■□□□□ 0.21
CLN3-202ENST00000355477 SULT2B1O00204 365 aa16.34■□□□□ 0.21
CLN3-202ENST00000355477 CLIC1O00299 241 aa16.34■□□□□ 0.21
CLN3-202ENST00000355477 CYTIPO60759 359 aa16.34■□□□□ 0.21
CLN3-202ENST00000355477 ATE1O95260 518 aa16.34■□□□□ 0.21
CLN3-202ENST00000355477 TFPIP10646 304 aa16.34■□□□□ 0.21
CLN3-202ENST00000355477 CCNA2P20248 432 aa16.34■□□□□ 0.21
CLN3-202ENST00000355477 RASGEF1BQ0VAM2 473 aa16.34■□□□□ 0.21
CLN3-202ENST00000355477 RGNQ15493 299 aa16.34■□□□□ 0.21
CLN3-202ENST00000355477 TFAP2EQ6VUC0 442 aa16.34■□□□□ 0.21
CLN3-202ENST00000355477 ZNF836Q6ZNA1 936 aa16.34■□□□□ 0.21
CLN3-202ENST00000355477 STK32CQ86UX6 486 aa16.34■□□□□ 0.21
CLN3-202ENST00000355477 MSRB3Q8IXL7 192 aa16.34■□□□□ 0.21
CLN3-202ENST00000355477 OR52P1PQ8NH57 321 aa16.34■□□□□ 0.21
CLN3-202ENST00000355477 SLC25A43Q8WUT9 341 aaPredicted RBP16.34■□□□□ 0.21
CLN3-202ENST00000355477 PIK3IP1Q96FE7 263 aa16.34■□□□□ 0.21
CLN3-202ENST00000355477 TMEM19Q96HH6 336 aa16.34■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 45.9 ms