RNA–Protein interactions for RNA: ENST00000345005.8

CLK3-201, Transcript of CDC like kinase 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLK3, Length 1,846 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-201ENST00000345005 BMP8AQ7Z5Y6 402 aa11.83□□□□□ -0.52
CLK3-201ENST00000345005 TMEM151BQ8IW70 566 aa11.83□□□□□ -0.52
CLK3-201ENST00000345005 ZNF615Q8N8J6 731 aa11.83□□□□□ -0.52
CLK3-201ENST00000345005 C16orf52Q8NHV5 167 aa11.83□□□□□ -0.52
CLK3-201ENST00000345005 ENKURQ8TC29 256 aa11.83□□□□□ -0.52
CLK3-201ENST00000345005 SLC7A13Q8TCU3 470 aa11.83□□□□□ -0.52
CLK3-201ENST00000345005 CCDC74BQ96LY2 380 aa11.83□□□□□ -0.52
CLK3-201ENST00000345005 KCTD7Q96MP8 289 aa11.83□□□□□ -0.52
CLK3-201ENST00000345005 GFM1Q96RP9 751 aaKnown RBP11.83□□□□□ -0.52
CLK3-201ENST00000345005 POLR2J3Q9H1A7 115 aaKnown RBP11.83□□□□□ -0.52
CLK3-201ENST00000345005 Q9N2J8 555 aa11.83□□□□□ -0.52
CLK3-201ENST00000345005 PNO1Q9NRX1 252 aaKnown RBP11.83□□□□□ -0.52
CLK3-201ENST00000345005 SNTG1Q9NSN8 517 aa11.83□□□□□ -0.52
CLK3-201ENST00000345005 FBXO34Q9NWN3 711 aa11.83□□□□□ -0.52
CLK3-201ENST00000345005 ING3Q9NXR8 418 aa11.83□□□□□ -0.52
CLK3-201ENST00000345005 MRPL39Q9NYK5 338 aaKnown RBP11.83□□□□□ -0.52
CLK3-201ENST00000345005 ADAM30Q9UKF2 790 aa11.83□□□□□ -0.52
CLK3-201ENST00000345005 RARRES3Q9UL19 164 aa11.83□□□□□ -0.52
CLK3-201ENST00000345005 DIMT1Q9UNQ2 313 aaKnown RBP11.83□□□□□ -0.52
CLK3-201ENST00000345005 GPR55Q9Y2T6 319 aaPredicted RBP11.83□□□□□ -0.52
CLK3-201ENST00000345005 PCDHGB7Q9Y5F8 929 aa11.83□□□□□ -0.52
CLK3-201ENST00000345005 A0A1W2PQ09 198 aa11.82□□□□□ -0.52
CLK3-201ENST00000345005 PRR33A8MZF0 331 aa11.82□□□□□ -0.52
CLK3-201ENST00000345005 TPST2O60704 377 aa11.82□□□□□ -0.52
CLK3-201ENST00000345005 ENTPD6O75354 484 aa11.82□□□□□ -0.52
CLK3-201ENST00000345005 CSO75390 466 aaKnown RBP11.82□□□□□ -0.52
CLK3-201ENST00000345005 CYP7B1O75881 506 aa11.82□□□□□ -0.52
CLK3-201ENST00000345005 RAB36O95755 333 aa11.82□□□□□ -0.52
CLK3-201ENST00000345005 ZNF883P0CG24 379 aa11.82□□□□□ -0.52
CLK3-201ENST00000345005 ATXN8OSP0DMR3 200 aa11.82□□□□□ -0.52
CLK3-201ENST00000345005 PRKAR1AP10644 381 aa11.82□□□□□ -0.52
CLK3-201ENST00000345005 POU2F1P14859 743 aa11.82□□□□□ -0.52
CLK3-201ENST00000345005 TRAM2Q15035 370 aa11.82□□□□□ -0.52
CLK3-201ENST00000345005 LPAL2Q16609 132 aa11.82□□□□□ -0.52
CLK3-201ENST00000345005 FLYWCH1Q4VC44 716 aa11.82□□□□□ -0.52
CLK3-201ENST00000345005 C1orf189Q5VU69 101 aa11.82□□□□□ -0.52
CLK3-201ENST00000345005 NXNL2Q5VZ03 156 aa11.82□□□□□ -0.52
CLK3-201ENST00000345005 PLET1Q6UQ28 207 aa11.82□□□□□ -0.52
CLK3-201ENST00000345005 RFPL4BQ6ZWI9 263 aa11.82□□□□□ -0.52
CLK3-201ENST00000345005 ESX1Q8N693 406 aa11.82□□□□□ -0.52
CLK3-201ENST00000345005 C19orf18Q8NEA5 215 aa11.82□□□□□ -0.52
CLK3-201ENST00000345005 ZFAND1Q8TCF1 268 aa11.82□□□□□ -0.52
CLK3-201ENST00000345005 PTPMT1Q8WUK0 201 aaPredicted RBP11.82□□□□□ -0.52
CLK3-201ENST00000345005 SENP5Q96HI0 755 aaPredicted RBP11.82□□□□□ -0.52
CLK3-201ENST00000345005 DIRAS2Q96HU8 199 aa11.82□□□□□ -0.52
CLK3-201ENST00000345005 OR6C1Q96RD1 312 aa11.82□□□□□ -0.52
CLK3-201ENST00000345005 MCHR1Q99705 422 aa11.82□□□□□ -0.52
CLK3-201ENST00000345005 G6PC3Q9BUM1 346 aa11.82□□□□□ -0.52
CLK3-201ENST00000345005 MAN2C1Q9NTJ4 1040 aa11.82□□□□□ -0.52
CLK3-201ENST00000345005 PAQR5Q9NXK6 330 aaPredicted RBP11.82□□□□□ -0.52
CLK3-201ENST00000345005 KCNN3Q9UGI6 736 aa11.82□□□□□ -0.52
CLK3-201ENST00000345005 CLCA3PQ9Y6N3 262 aa11.82□□□□□ -0.52
CLK3-201ENST00000345005 SLC30A4O14863 429 aa11.81□□□□□ -0.52
CLK3-201ENST00000345005 KHNYNO15037 678 aaKnown RBP11.81□□□□□ -0.52
CLK3-201ENST00000345005 FRS3O43559 492 aa11.81□□□□□ -0.52
CLK3-201ENST00000345005 HLA-DQB1P01920 261 aa11.81□□□□□ -0.52
CLK3-201ENST00000345005 HBQ1P09105 142 aa11.81□□□□□ -0.52
CLK3-201ENST00000345005 TSPAN19P0C672 248 aa11.81□□□□□ -0.52
CLK3-201ENST00000345005 MYL12AP19105 171 aa11.81□□□□□ -0.52
CLK3-201ENST00000345005 POU1F1P28069 291 aa11.81□□□□□ -0.52
CLK3-201ENST00000345005 IFNGR2P38484 337 aa11.81□□□□□ -0.52
CLK3-201ENST00000345005 MPLP40238 635 aa11.81□□□□□ -0.52
CLK3-201ENST00000345005 ELAVL1Q15717 326 aaKnown RBP11.81□□□□□ -0.52
CLK3-201ENST00000345005 ZNF79Q15937 498 aa11.81□□□□□ -0.52
CLK3-201ENST00000345005 MAPK14Q16539 360 aa11.81□□□□□ -0.52
CLK3-201ENST00000345005 ZSWIM7Q19AV6 140 aa11.81□□□□□ -0.52
CLK3-201ENST00000345005 TMEM44Q2T9K0 475 aa11.81□□□□□ -0.52
CLK3-201ENST00000345005 VWA2Q5GFL6 755 aa11.81□□□□□ -0.52
CLK3-201ENST00000345005 C3orf38Q5JPI3 329 aa11.81□□□□□ -0.52
CLK3-201ENST00000345005 ENTPD8Q5MY95 495 aa11.81□□□□□ -0.52
CLK3-201ENST00000345005 MRPL2Q5T653 305 aaKnown RBP11.81□□□□□ -0.52
CLK3-201ENST00000345005 PLEKHM3Q6ZWE6 761 aa11.81□□□□□ -0.52
CLK3-201ENST00000345005 LAPTM4BQ86VI4 370 aa11.81□□□□□ -0.52
CLK3-201ENST00000345005 RANBP3LQ86VV4 465 aaPredicted RBP11.81□□□□□ -0.52
CLK3-201ENST00000345005 PHC2Q8IXK0 858 aa11.81□□□□□ -0.52
CLK3-201ENST00000345005 RCBTB1Q8NDN9 531 aa11.81□□□□□ -0.52
CLK3-201ENST00000345005 PLPP5Q8NEB5 264 aa11.81□□□□□ -0.52
CLK3-201ENST00000345005 TOR1AIP2Q8NFQ8 470 aa11.81□□□□□ -0.52
CLK3-201ENST00000345005 DIO2Q92813 273 aa11.81□□□□□ -0.52
CLK3-201ENST00000345005 RNF170Q96K19 258 aa11.81□□□□□ -0.52
CLK3-201ENST00000345005 POLDIP3Q9BY77 421 aaKnown RBP11.81□□□□□ -0.52
CLK3-201ENST00000345005 PRRG3Q9BZD7 231 aa11.81□□□□□ -0.52
CLK3-201ENST00000345005 BARHL1Q9BZE3 327 aa11.81□□□□□ -0.52
CLK3-201ENST00000345005 TGIF2Q9GZN2 237 aa11.81□□□□□ -0.52
CLK3-201ENST00000345005 ACOXLQ9NUZ1 547 aa11.81□□□□□ -0.52
CLK3-201ENST00000345005 MRPS18AQ9NVS2 196 aaKnown RBP11.81□□□□□ -0.52
CLK3-201ENST00000345005 PCDHGA5Q9Y5G8 931 aa11.81□□□□□ -0.52
CLK3-201ENST00000345005 TCRBV16S1A1N1A0A5B0 115 aa11.81□□□□□ -0.52
CLK3-201ENST00000345005 CDHR4A6H8M9 788 aa11.81□□□□□ -0.52
CLK3-201ENST00000345005 CPSF4LA6NMK7 179 aaKnown RBP11.81□□□□□ -0.52
CLK3-201ENST00000345005 B4DXG7 233 aa11.81□□□□□ -0.52
CLK3-201ENST00000345005 PEX12O00623 359 aa11.81□□□□□ -0.52
CLK3-201ENST00000345005 POLR1CO15160 346 aaPredicted RBP11.81□□□□□ -0.52
CLK3-201ENST00000345005 SHOXO15266 292 aa11.81□□□□□ -0.52
CLK3-201ENST00000345005 CDRT1O95170 752 aa11.81□□□□□ -0.52
CLK3-201ENST00000345005 OR5F1O95221 314 aa11.81□□□□□ -0.52
CLK3-201ENST00000345005 CT45A8P0DMV1 189 aa11.81□□□□□ -0.52
CLK3-201ENST00000345005 CT45A9P0DMV2 189 aa11.81□□□□□ -0.52
CLK3-201ENST00000345005 GSTM3P21266 225 aa11.81□□□□□ -0.52
CLK3-201ENST00000345005 PRKACBP22694 351 aa11.81□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 41.9 ms