RNA–Protein interactions for RNA: ENST00000339950.4

USP1-201, Transcript of ubiquitin specific peptidase 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP1, Length 3,996 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP1-201ENST00000339950 RAB40BQ12829 278 aa11.08□□□□□ -0.64
USP1-201ENST00000339950 RUNX2Q13950 521 aa11.08□□□□□ -0.64
USP1-201ENST00000339950 SLC48A1Q6P1K1 146 aa11.08□□□□□ -0.64
USP1-201ENST00000339950 FAM180AQ6UWF9 173 aa11.08□□□□□ -0.64
USP1-201ENST00000339950 ZNF836Q6ZNA1 936 aa11.08□□□□□ -0.64
USP1-201ENST00000339950 Q6ZSR6 202 aa11.08□□□□□ -0.64
USP1-201ENST00000339950 KIAA1958Q8N8K9 716 aa11.08□□□□□ -0.64
USP1-201ENST00000339950 TRIM2Q9C040 744 aa11.08□□□□□ -0.64
USP1-201ENST00000339950 MTHFD2LQ9H903 347 aaPredicted RBP11.08□□□□□ -0.64
USP1-201ENST00000339950 FARSAQ9Y285 508 aaKnown RBP11.08□□□□□ -0.64
USP1-201ENST00000339950 PPIL1Q9Y3C6 166 aa11.08□□□□□ -0.64
USP1-201ENST00000339950 TRAPPC13A5PLN9 417 aa11.08□□□□□ -0.64
USP1-201ENST00000339950 M0R233 179 aa11.08□□□□□ -0.64
USP1-201ENST00000339950 P2RX6O15547 441 aa11.08□□□□□ -0.64
USP1-201ENST00000339950 CTSVO60911 334 aa11.08□□□□□ -0.64
USP1-201ENST00000339950 EFCAB14O75071 495 aa11.08□□□□□ -0.64
USP1-201ENST00000339950 FGF19O95750 216 aa11.08□□□□□ -0.64
USP1-201ENST00000339950 S100A9P06702 114 aaKnown RBP11.08□□□□□ -0.64
USP1-201ENST00000339950 CELA2BP08218 269 aaPredicted RBP11.08□□□□□ -0.64
USP1-201ENST00000339950 MAOAP21397 527 aa11.08□□□□□ -0.64
USP1-201ENST00000339950 TBXA2RP21731 343 aa11.08□□□□□ -0.64
USP1-201ENST00000339950 ARHGDIBP52566 201 aa11.08□□□□□ -0.64
USP1-201ENST00000339950 ZNF627Q7L945 461 aa11.08□□□□□ -0.64
USP1-201ENST00000339950 C17orf47Q8NEP4 570 aa11.08□□□□□ -0.64
USP1-201ENST00000339950 SLC38A3Q99624 504 aa11.08□□□□□ -0.64
USP1-201ENST00000339950 PINK1Q9BXM7 581 aa11.08□□□□□ -0.64
USP1-201ENST00000339950 PBX4Q9BYU1 374 aa11.08□□□□□ -0.64
USP1-201ENST00000339950 B3GAT2Q9NPZ5 323 aa11.08□□□□□ -0.64
USP1-201ENST00000339950 LHX9Q9NQ69 397 aa11.08□□□□□ -0.64
USP1-201ENST00000339950 PRDM9Q9NQV7 894 aa11.08□□□□□ -0.64
USP1-201ENST00000339950 DIMT1Q9UNQ2 313 aaKnown RBP11.08□□□□□ -0.64
USP1-201ENST00000339950 ANXA2P2A6NMY6 339 aa11.08□□□□□ -0.64
USP1-201ENST00000339950 C4orf47A7E2U8 309 aa11.08□□□□□ -0.64
USP1-201ENST00000339950 HCRTR2O43614 444 aa11.08□□□□□ -0.64
USP1-201ENST00000339950 LANCL1O43813 399 aa11.08□□□□□ -0.64
USP1-201ENST00000339950 SELENOFO60613 162 aa11.08□□□□□ -0.64
USP1-201ENST00000339950 ANXA2P07355 339 aaKnown RBP11.08□□□□□ -0.64
USP1-201ENST00000339950 CTSBP07858 339 aa11.08□□□□□ -0.64
USP1-201ENST00000339950 F3P13726 295 aa11.08□□□□□ -0.64
USP1-201ENST00000339950 RAB3BP20337 219 aa11.08□□□□□ -0.64
USP1-201ENST00000339950 IGFALSP35858 605 aa11.08□□□□□ -0.64
USP1-201ENST00000339950 DGCR2P98153 550 aa11.08□□□□□ -0.64
USP1-201ENST00000339950 SCGB2B2Q4G0G5 96 aa11.08□□□□□ -0.64
USP1-201ENST00000339950 LEG1Q6P5S2 330 aa11.08□□□□□ -0.64
USP1-201ENST00000339950 FAM220AQ7Z4H9 259 aa11.08□□□□□ -0.64
USP1-201ENST00000339950 FAM109AQ8N4B1 249 aa11.08□□□□□ -0.64
USP1-201ENST00000339950 CAMKVQ8NCB2 501 aa11.08□□□□□ -0.64
USP1-201ENST00000339950 OR5J2Q8NH18 312 aa11.08□□□□□ -0.64
USP1-201ENST00000339950 FAM3CQ92520 227 aa11.08□□□□□ -0.64
USP1-201ENST00000339950 RSC1A1Q92681 617 aa11.08□□□□□ -0.64
USP1-201ENST00000339950 DERL3Q96Q80 235 aa11.08□□□□□ -0.64
USP1-201ENST00000339950 B3GNT4Q9C0J1 378 aa11.08□□□□□ -0.64
USP1-201ENST00000339950 TMEM185BQ9H7F4 350 aa11.08□□□□□ -0.64
USP1-201ENST00000339950 PELI2Q9HAT8 420 aa11.08□□□□□ -0.64
USP1-201ENST00000339950 ACTR10Q9NZ32 417 aa11.08□□□□□ -0.64
USP1-201ENST00000339950 IGKV1-8A0A0C4DH67 115 aa11.07□□□□□ -0.64
USP1-201ENST00000339950 A0A1W2PRQ8 180 aa11.07□□□□□ -0.64
USP1-201ENST00000339950 CEACAM5P06731 702 aa11.07□□□□□ -0.64
USP1-201ENST00000339950 ARSBP15848 533 aa11.07□□□□□ -0.64
USP1-201ENST00000339950 GRK6P43250 576 aa11.07□□□□□ -0.64
USP1-201ENST00000339950 BTG2P78543 158 aa11.07□□□□□ -0.64
USP1-201ENST00000339950 NDUFAF7Q7L592 441 aa11.07□□□□□ -0.64
USP1-201ENST00000339950 OR4D9Q8NGE8 314 aa11.07□□□□□ -0.64
USP1-201ENST00000339950 CHAC2Q8WUX2 184 aa11.07□□□□□ -0.64
USP1-201ENST00000339950 ELL3Q9HB65 397 aaPredicted RBP11.07□□□□□ -0.64
USP1-201ENST00000339950 FKBP14Q9NWM8 211 aa11.07□□□□□ -0.64
USP1-201ENST00000339950 PCDHGB2Q9Y5G2 931 aa11.07□□□□□ -0.64
USP1-201ENST00000339950 PRRC2CQ9Y520 2896 aaKnown RBP11.07□□□□□ -0.64
USP1-201ENST00000339950 C17orf113A0A1B0GUU1 675 aa11.07□□□□□ -0.64
USP1-201ENST00000339950 SPINT1O43278 529 aa11.07□□□□□ -0.64
USP1-201ENST00000339950 EIF4EP06730 217 aaKnown RBP11.07□□□□□ -0.64
USP1-201ENST00000339950 PRKCAP17252 672 aa11.07□□□□□ -0.64
USP1-201ENST00000339950 STOMP27105 288 aa11.07□□□□□ -0.64
USP1-201ENST00000339950 HSD17B2P37059 387 aa11.07□□□□□ -0.64
USP1-201ENST00000339950 PDE7AQ13946 482 aa11.07□□□□□ -0.64
USP1-201ENST00000339950 MFSD12Q6NUT3 480 aa11.07□□□□□ -0.64
USP1-201ENST00000339950 LINC00299Q6ZSB3 139 aa11.07□□□□□ -0.64
USP1-201ENST00000339950 FCRLAQ7L513 359 aa11.07□□□□□ -0.64
USP1-201ENST00000339950 COMMD7Q86VX2 200 aa11.07□□□□□ -0.64
USP1-201ENST00000339950 CLDN22Q8N7P3 220 aa11.07□□□□□ -0.64
USP1-201ENST00000339950 TMIEQ8NEW7 156 aa11.07□□□□□ -0.64
USP1-201ENST00000339950 RPLP0P6Q8NHW5 317 aa11.07□□□□□ -0.64
USP1-201ENST00000339950 ADOQ96SZ5 270 aa11.07□□□□□ -0.64
USP1-201ENST00000339950 C1QTNF6Q9BXI9 259 aa11.07□□□□□ -0.64
USP1-201ENST00000339950 MKKSQ9NPJ1 570 aaPredicted RBP11.07□□□□□ -0.64
USP1-201ENST00000339950 PRDM7Q9NQW5 492 aa11.07□□□□□ -0.64
USP1-201ENST00000339950 ACSS1Q9NUB1 689 aaPredicted RBP11.07□□□□□ -0.64
USP1-201ENST00000339950 RCE1Q9Y256 329 aa11.07□□□□□ -0.64
USP1-201ENST00000339950 SIRT4Q9Y6E7 314 aaPredicted RBP11.07□□□□□ -0.64
USP1-201ENST00000339950 HRKO00198 91 aa11.07□□□□□ -0.64
USP1-201ENST00000339950 RGS9O75916 674 aaPredicted RBP11.07□□□□□ -0.64
USP1-201ENST00000339950 IL1AP01583 271 aa11.07□□□□□ -0.64
USP1-201ENST00000339950 SEMG1P04279 462 aa11.07□□□□□ -0.64
USP1-201ENST00000339950 CAPZA2P47755 286 aa11.07□□□□□ -0.64
USP1-201ENST00000339950 FOXK2Q01167 660 aa11.07□□□□□ -0.64
USP1-201ENST00000339950 CEP76Q8TAP6 659 aa11.07□□□□□ -0.64
USP1-201ENST00000339950 THAP4Q8WY91 577 aa11.07□□□□□ -0.64
USP1-201ENST00000339950 RSPO3Q9BXY4 272 aaPredicted RBP11.07□□□□□ -0.64
USP1-201ENST00000339950 AUNIPQ9H7T9 357 aa11.07□□□□□ -0.64
USP1-201ENST00000339950 NDUFB11Q9NX14 153 aa11.07□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 21.2 ms