RNA–Protein interactions for RNA: ENST00000339872.8

HMGB1-202, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 2 BASIC

Gene HMGB1, Length 2,319 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-202ENST00000339872 RPL13AP3Q6NVV1 102 aa12.24□□□□□ -0.45
HMGB1-202ENST00000339872 SMARCD3Q6STE5 483 aa12.24□□□□□ -0.45
HMGB1-202ENST00000339872 OR8K3Q8NH51 312 aa12.24□□□□□ -0.45
HMGB1-202ENST00000339872 FCGR1BQ92637 280 aa12.24□□□□□ -0.45
HMGB1-202ENST00000339872 FUNDC2Q9BWH2 189 aa12.24□□□□□ -0.45
HMGB1-202ENST00000339872 FADS1O60427 444 aa12.23□□□□□ -0.45
HMGB1-202ENST00000339872 TRMUO75648 421 aaKnown RBP12.23□□□□□ -0.45
HMGB1-202ENST00000339872 ZFAND5O76080 213 aa12.23□□□□□ -0.45
HMGB1-202ENST00000339872 NUDT14O95848 222 aa12.23□□□□□ -0.45
HMGB1-202ENST00000339872 ADRA2AP08913 450 aa12.23□□□□□ -0.45
HMGB1-202ENST00000339872 JMJD7P0C870 316 aa12.23□□□□□ -0.45
HMGB1-202ENST00000339872 MST1P26927 711 aa12.23□□□□□ -0.45
HMGB1-202ENST00000339872 ST13P50502 369 aaKnown RBP12.23□□□□□ -0.45
HMGB1-202ENST00000339872 EFR3AQ14156 821 aa12.23□□□□□ -0.45
HMGB1-202ENST00000339872 PCOLCEQ15113 449 aa12.23□□□□□ -0.45
HMGB1-202ENST00000339872 BTBD16Q32M84 506 aa12.23□□□□□ -0.45
HMGB1-202ENST00000339872 UBE2UQ5VVX9 321 aa12.23□□□□□ -0.45
HMGB1-202ENST00000339872 THSD4Q6ZMP0 1018 aa12.23□□□□□ -0.45
HMGB1-202ENST00000339872 ATG4DQ86TL0 474 aaPredicted RBP12.23□□□□□ -0.45
HMGB1-202ENST00000339872 ZNF524Q96C55 264 aa12.23□□□□□ -0.45
HMGB1-202ENST00000339872 SGTBQ96EQ0 304 aa12.23□□□□□ -0.45
HMGB1-202ENST00000339872 DOK1Q99704 481 aa12.23□□□□□ -0.45
HMGB1-202ENST00000339872 CDC6Q99741 560 aa12.23□□□□□ -0.45
HMGB1-202ENST00000339872 IFT27Q9BW83 186 aa12.23□□□□□ -0.45
HMGB1-202ENST00000339872 ICAM5Q9UMF0 924 aa12.23□□□□□ -0.45
HMGB1-202ENST00000339872 MPDZO75970 2070 aa12.23□□□□□ -0.45
HMGB1-202ENST00000339872 LOC102723996A0A087X1L8 192 aa12.23□□□□□ -0.45
HMGB1-202ENST00000339872 BHLHE40O14503 412 aa12.23□□□□□ -0.45
HMGB1-202ENST00000339872 EIF4E2O60573 245 aaKnown RBP12.23□□□□□ -0.45
HMGB1-202ENST00000339872 CSO75390 466 aaKnown RBP12.23□□□□□ -0.45
HMGB1-202ENST00000339872 SLC2A10O95528 541 aa12.23□□□□□ -0.45
HMGB1-202ENST00000339872 NADKO95544 446 aaPredicted RBP12.23□□□□□ -0.45
HMGB1-202ENST00000339872 HMGN1P05114 100 aa12.23□□□□□ -0.45
HMGB1-202ENST00000339872 ADORA3P0DMS8 318 aa12.23□□□□□ -0.45
HMGB1-202ENST00000339872 PNMTP11086 282 aa12.23□□□□□ -0.45
HMGB1-202ENST00000339872 TMBIM6P55061 237 aa12.23□□□□□ -0.45
HMGB1-202ENST00000339872 ANKK1Q8NFD2 765 aa12.23□□□□□ -0.45
HMGB1-202ENST00000339872 OR2Y1Q8NGV0 311 aa12.23□□□□□ -0.45
HMGB1-202ENST00000339872 MED17Q9NVC6 651 aa12.23□□□□□ -0.45
HMGB1-202ENST00000339872 IGHV1-45A0A0A0MS14 117 aa12.22□□□□□ -0.45
HMGB1-202ENST00000339872 LRRN3E7EW58 273 aa12.22□□□□□ -0.45
HMGB1-202ENST00000339872 PRODHO43272 600 aa12.22□□□□□ -0.45
HMGB1-202ENST00000339872 ATE1O95260 518 aa12.22□□□□□ -0.45
HMGB1-202ENST00000339872 PTHP01270 115 aa12.22□□□□□ -0.45
HMGB1-202ENST00000339872 ENDOUP21128 410 aaKnown RBP12.22□□□□□ -0.45
HMGB1-202ENST00000339872 FOLR3P41439 243 aa12.22□□□□□ -0.45
HMGB1-202ENST00000339872 NUBP1P53384 320 aa12.22□□□□□ -0.45
HMGB1-202ENST00000339872 IRF3Q14653 427 aa12.22□□□□□ -0.45
HMGB1-202ENST00000339872 SLC35F1Q5T1Q4 408 aa12.22□□□□□ -0.45
HMGB1-202ENST00000339872 RAB2BQ8WUD1 216 aa12.22□□□□□ -0.45
HMGB1-202ENST00000339872 LIN37Q96GY3 246 aaPredicted RBP12.22□□□□□ -0.45
HMGB1-202ENST00000339872 TNFRSF13CQ96RJ3 184 aa12.22□□□□□ -0.45
HMGB1-202ENST00000339872 CCNL2Q96S94 520 aaPredicted RBP12.22□□□□□ -0.45
HMGB1-202ENST00000339872 CDCA4Q9BXL8 241 aa12.22□□□□□ -0.45
HMGB1-202ENST00000339872 DEFB126Q9BYW3 111 aa12.22□□□□□ -0.45
HMGB1-202ENST00000339872 MYOTQ9UBF9 498 aa12.22□□□□□ -0.45
HMGB1-202ENST00000339872 IGKV1D-42A0A075B6H8 117 aa12.22□□□□□ -0.45
HMGB1-202ENST00000339872 SNTNA6NMZ2 147 aa12.22□□□□□ -0.45
HMGB1-202ENST00000339872 KDM4EB2RXH2 506 aaPredicted RBP12.22□□□□□ -0.45
HMGB1-202ENST00000339872 TMX2-CTNND1H3BSU7 103 aa12.22□□□□□ -0.45
HMGB1-202ENST00000339872 PTP4A3O75365 173 aa12.22□□□□□ -0.45
HMGB1-202ENST00000339872 NR4A1P22736 598 aa12.22□□□□□ -0.45
HMGB1-202ENST00000339872 ACVR2AP27037 513 aa12.22□□□□□ -0.45
HMGB1-202ENST00000339872 TACR3P29371 465 aa12.22□□□□□ -0.45
HMGB1-202ENST00000339872 GRK5P34947 590 aa12.22□□□□□ -0.45
HMGB1-202ENST00000339872 SLC1A3P43003 542 aa12.22□□□□□ -0.45
HMGB1-202ENST00000339872 TOMM34Q15785 309 aaPredicted RBP12.22□□□□□ -0.45
HMGB1-202ENST00000339872 CDCP2Q5VXM1 449 aa12.22□□□□□ -0.45
HMGB1-202ENST00000339872 C9orf43Q8TAL5 461 aaPredicted RBP12.22□□□□□ -0.45
HMGB1-202ENST00000339872 TMCO6Q96DC7 493 aa12.22□□□□□ -0.45
HMGB1-202ENST00000339872 TMEM80Q96HE8 168 aa12.22□□□□□ -0.45
HMGB1-202ENST00000339872 TAAR9Q96RI9 348 aa12.22□□□□□ -0.45
HMGB1-202ENST00000339872 ZPBPQ9BS86 351 aa12.22□□□□□ -0.45
HMGB1-202ENST00000339872 DCUN1D5Q9BTE7 237 aa12.22□□□□□ -0.45
HMGB1-202ENST00000339872 SLC19A3Q9BZV2 496 aa12.22□□□□□ -0.45
HMGB1-202ENST00000339872 MCCC2Q9HCC0 563 aa12.22□□□□□ -0.45
HMGB1-202ENST00000339872 HS3ST3B1Q9Y662 390 aa12.22□□□□□ -0.45
HMGB1-202ENST00000339872 PRR33A8MZF0 331 aa12.21□□□□□ -0.45
HMGB1-202ENST00000339872 OR2J2O76002 312 aa12.21□□□□□ -0.45
HMGB1-202ENST00000339872 COX6A1P12074 109 aa12.21□□□□□ -0.45
HMGB1-202ENST00000339872 PGCP20142 388 aa12.21□□□□□ -0.45
HMGB1-202ENST00000339872 P2RX1P51575 399 aa12.21□□□□□ -0.45
HMGB1-202ENST00000339872 CBFBQ13951 182 aa12.21□□□□□ -0.45
HMGB1-202ENST00000339872 TIGD6Q17RP2 521 aa12.21□□□□□ -0.45
HMGB1-202ENST00000339872 POMZP3Q6PJE2 187 aa12.21□□□□□ -0.45
HMGB1-202ENST00000339872 DHRS13Q6UX07 377 aa12.21□□□□□ -0.45
HMGB1-202ENST00000339872 C6orf15Q6UXA7 325 aaPredicted RBP12.21□□□□□ -0.45
HMGB1-202ENST00000339872 SLC16A12Q6ZSM3 486 aa12.21□□□□□ -0.45
HMGB1-202ENST00000339872 ERI1Q8IV48 349 aaKnown RBP12.21□□□□□ -0.45
HMGB1-202ENST00000339872 ALDH16A1Q8IZ83 802 aa12.21□□□□□ -0.45
HMGB1-202ENST00000339872 LNX2Q8N448 690 aa12.21□□□□□ -0.45
HMGB1-202ENST00000339872 LRRC17Q8N6Y2 441 aa12.21□□□□□ -0.45
HMGB1-202ENST00000339872 OR5W2Q8NH69 310 aa12.21□□□□□ -0.45
HMGB1-202ENST00000339872 DUSP19Q8WTR2 217 aa12.21□□□□□ -0.45
HMGB1-202ENST00000339872 OTULINQ96BN8 352 aa12.21□□□□□ -0.45
HMGB1-202ENST00000339872 TMEM43Q9BTV4 400 aa12.21□□□□□ -0.45
HMGB1-202ENST00000339872 ZNF700Q9H0M5 742 aa12.21□□□□□ -0.45
HMGB1-202ENST00000339872 ENPP5Q9UJA9 477 aa12.21□□□□□ -0.45
HMGB1-202ENST00000339872 PADI1Q9ULC6 663 aa12.21□□□□□ -0.45
HMGB1-202ENST00000339872 PCNX3Q9H6A9 2034 aa12.21□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 24.9 ms