RNA–Protein interactions for RNA: ENST00000326004.4

HMGB1-201, Transcript of high mobility group box 1, humanhuman

TSL 3 BASIC

Gene HMGB1, Length 821 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-201ENST00000326004 PPIAL4CA0A0B4J2A2 164 aa2.43□□□□□ -2.02
HMGB1-201ENST00000326004 EPOPA6NHQ4 379 aa2.43□□□□□ -2.02
HMGB1-201ENST00000326004 CCDC169A6NNP5 214 aa2.43□□□□□ -2.02
HMGB1-201ENST00000326004 WWP2O00308 870 aa2.43□□□□□ -2.02
HMGB1-201ENST00000326004 SDHDO14521 159 aa2.43□□□□□ -2.02
HMGB1-201ENST00000326004 CDX4O14627 284 aaPredicted RBP2.43□□□□□ -2.02
HMGB1-201ENST00000326004 MAGEB3O15480 346 aa2.43□□□□□ -2.02
HMGB1-201ENST00000326004 LATO43561 262 aa2.43□□□□□ -2.02
HMGB1-201ENST00000326004 MTX2O75431 263 aa2.43□□□□□ -2.02
HMGB1-201ENST00000326004 MFN2O95140 757 aa2.43□□□□□ -2.02
HMGB1-201ENST00000326004 OPN1LWP04000 364 aa2.43□□□□□ -2.02
HMGB1-201ENST00000326004 ASNSP08243 561 aa2.43□□□□□ -2.02
HMGB1-201ENST00000326004 STSP08842 583 aa2.43□□□□□ -2.02
HMGB1-201ENST00000326004 IQCF3P0C7M6 154 aa2.43□□□□□ -2.02
HMGB1-201ENST00000326004 PPIAL4GP0DN37 164 aa2.43□□□□□ -2.02
HMGB1-201ENST00000326004 CLUP10909 449 aa2.43□□□□□ -2.02
HMGB1-201ENST00000326004 XRCC1P18887 633 aaPredicted RBP2.43□□□□□ -2.02
HMGB1-201ENST00000326004 UGT1A3P35503 534 aa2.43□□□□□ -2.02
HMGB1-201ENST00000326004 NOVA1P51513 510 aaKnown RBP2.43□□□□□ -2.02
HMGB1-201ENST00000326004 RIPPLY3P57055 190 aa2.43□□□□□ -2.02
HMGB1-201ENST00000326004 LYZP61626 148 aa2.43□□□□□ -2.02
HMGB1-201ENST00000326004 RPL8P62917 257 aaKnown RBP2.43□□□□□ -2.02
HMGB1-201ENST00000326004 VLDLRP98155 873 aa2.43□□□□□ -2.02
HMGB1-201ENST00000326004 SPIBQ01892 262 aa2.43□□□□□ -2.02
HMGB1-201ENST00000326004 OC90Q02509 493 aaPredicted RBP2.43□□□□□ -2.02
HMGB1-201ENST00000326004 ATXN7L3Q14CW9 347 aaPredicted RBP2.43□□□□□ -2.02
HMGB1-201ENST00000326004 ISXQ2M1V0 245 aa2.43□□□□□ -2.02
HMGB1-201ENST00000326004 CCDC152Q4G0S7 254 aa2.43□□□□□ -2.02
HMGB1-201ENST00000326004 LRRC23Q53EV4 343 aaPredicted RBP2.43□□□□□ -2.02
HMGB1-201ENST00000326004 TFAP2EQ6VUC0 442 aa2.43□□□□□ -2.02
HMGB1-201ENST00000326004 LANCL3Q6ZV70 420 aa2.43□□□□□ -2.02
HMGB1-201ENST00000326004 CYS1Q717R9 158 aa2.43□□□□□ -2.02
HMGB1-201ENST00000326004 MOB1BQ7L9L4 216 aa2.43□□□□□ -2.02
HMGB1-201ENST00000326004 TMEM17Q86X19 198 aa2.43□□□□□ -2.02
HMGB1-201ENST00000326004 STEAP2Q8NFT2 490 aa2.43□□□□□ -2.02
HMGB1-201ENST00000326004 OR2T3Q8NH03 318 aa2.43□□□□□ -2.02
HMGB1-201ENST00000326004 RNF139Q8WU17 664 aa2.43□□□□□ -2.02
HMGB1-201ENST00000326004 MAPKAP1Q9BPZ7 522 aa2.43□□□□□ -2.02
HMGB1-201ENST00000326004 EDEM2Q9BV94 578 aa2.43□□□□□ -2.02
HMGB1-201ENST00000326004 GSDMCQ9BYG8 508 aa2.43□□□□□ -2.02
HMGB1-201ENST00000326004 YTHDF1Q9BYJ9 559 aaKnown RBP2.43□□□□□ -2.02
HMGB1-201ENST00000326004 PPDPFQ9H3Y8 114 aa2.43□□□□□ -2.02
HMGB1-201ENST00000326004 DHX33Q9H6R0 707 aaKnown RBP2.43□□□□□ -2.02
HMGB1-201ENST00000326004 ZNF702PQ9H963 129 aa2.43□□□□□ -2.02
HMGB1-201ENST00000326004 RABL2AQ9UBK7 228 aaPredicted RBP2.43□□□□□ -2.02
HMGB1-201ENST00000326004 CTNNA3Q9UI47 895 aa2.43□□□□□ -2.02
HMGB1-201ENST00000326004 CA5BQ9Y2D0 317 aa2.43□□□□□ -2.02
HMGB1-201ENST00000326004 MAB21L2Q9Y586 359 aa2.43□□□□□ -2.02
HMGB1-201ENST00000326004 GOLGB1Q14789 3259 aaKnown RBP2.43□□□□□ -2.02
HMGB1-201ENST00000326004 INO80Q9ULG1 1556 aaPredicted RBP2.43□□□□□ -2.02
HMGB1-201ENST00000326004 RGPD3A6NKT7 1758 aaPredicted RBP2.43□□□□□ -2.02
HMGB1-201ENST00000326004 RGPD4Q7Z3J3 1758 aa2.43□□□□□ -2.02
HMGB1-201ENST00000326004 PKD1L2Q7Z442 2459 aa2.43□□□□□ -2.02
HMGB1-201ENST00000326004 OVOS2A0A0G2JMS6 1433 aa2.42□□□□□ -2.02
HMGB1-201ENST00000326004 OVOS2A0A0J9YW53 1432 aa2.42□□□□□ -2.02
HMGB1-201ENST00000326004 OVOS2Q6IE36 1432 aa2.42□□□□□ -2.02
HMGB1-201ENST00000326004 CDC42BPBQ9Y5S2 1711 aa2.42□□□□□ -2.02
HMGB1-201ENST00000326004 PRRC2AP48634 2157 aaKnown RBP2.42□□□□□ -2.02
HMGB1-201ENST00000326004 TNRC6CQ9HCJ0 1690 aaKnown RBP2.42□□□□□ -2.02
HMGB1-201ENST00000326004 PIK3R4Q99570 1358 aa2.42□□□□□ -2.02
HMGB1-201ENST00000326004 ANKRD30BQ9BXX2 1392 aa2.42□□□□□ -2.02
HMGB1-201ENST00000326004 OR6C65A6NJZ3 312 aa2.42□□□□□ -2.02
HMGB1-201ENST00000326004 FAM74A7A6NL05 159 aa2.42□□□□□ -2.02
HMGB1-201ENST00000326004 DHRS7CA6NNS2 312 aa2.42□□□□□ -2.02
HMGB1-201ENST00000326004 B4DXG7 233 aa2.42□□□□□ -2.02
HMGB1-201ENST00000326004 E7ENQ6 273 aa2.42□□□□□ -2.02
HMGB1-201ENST00000326004 OR7A17O14581 309 aa2.42□□□□□ -2.02
HMGB1-201ENST00000326004 TBX19O60806 448 aa2.42□□□□□ -2.02
HMGB1-201ENST00000326004 SCRG1O75711 98 aa2.42□□□□□ -2.02
HMGB1-201ENST00000326004 LYPD3O95274 346 aa2.42□□□□□ -2.02
HMGB1-201ENST00000326004 CSF2P04141 144 aa2.42□□□□□ -2.02
HMGB1-201ENST00000326004 GCFC2P16383 781 aaKnown RBP2.42□□□□□ -2.02
HMGB1-201ENST00000326004 ATP6V1C1P21283 382 aa2.42□□□□□ -2.02
HMGB1-201ENST00000326004 PAX7P23759 505 aa2.42□□□□□ -2.02
HMGB1-201ENST00000326004 OTX2P32243 289 aa2.42□□□□□ -2.02
HMGB1-201ENST00000326004 TAGLN2P37802 199 aaKnown RBP2.42□□□□□ -2.02
HMGB1-201ENST00000326004 ACADVLP49748 655 aa2.42□□□□□ -2.02
HMGB1-201ENST00000326004 SLC26A2P50443 739 aa2.42□□□□□ -2.02
HMGB1-201ENST00000326004 EFNA3P52797 238 aa2.42□□□□□ -2.02
HMGB1-201ENST00000326004 KRTAP10-3P60369 221 aa2.42□□□□□ -2.02
HMGB1-201ENST00000326004 RGS1Q08116 209 aa2.42□□□□□ -2.02
HMGB1-201ENST00000326004 IDI1Q13907 227 aa2.42□□□□□ -2.02
HMGB1-201ENST00000326004 CHI3L2Q15782 390 aa2.42□□□□□ -2.02
HMGB1-201ENST00000326004 PDK4Q16654 411 aa2.42□□□□□ -2.02
HMGB1-201ENST00000326004 FAM74A3Q4VXF1 159 aa2.42□□□□□ -2.02
HMGB1-201ENST00000326004 OR2B11Q5JQS5 317 aa2.42□□□□□ -2.02
HMGB1-201ENST00000326004 CELF3Q5SZQ8 465 aaKnown RBP2.42□□□□□ -2.02
HMGB1-201ENST00000326004 FAM120AOSQ5T036 256 aa2.42□□□□□ -2.02
HMGB1-201ENST00000326004 ASPHD2Q6ICH7 369 aa2.42□□□□□ -2.02
HMGB1-201ENST00000326004 ZNF677Q86XU0 584 aa2.42□□□□□ -2.02
HMGB1-201ENST00000326004 FBXO16Q8IX29 292 aaPredicted RBP2.42□□□□□ -2.02
HMGB1-201ENST00000326004 C11orf53Q8IXP5 236 aa2.42□□□□□ -2.02
HMGB1-201ENST00000326004 ZNF679Q8IYX0 411 aa2.42□□□□□ -2.02
HMGB1-201ENST00000326004 PRR22Q8IZ63 422 aa2.42□□□□□ -2.02
HMGB1-201ENST00000326004 C15orf54Q8N8G6 183 aa2.42□□□□□ -2.02
HMGB1-201ENST00000326004 EIF1ADQ8N9N8 165 aaKnown RBP2.42□□□□□ -2.02
HMGB1-201ENST00000326004 TRUB1Q8WWH5 349 aaKnown RBP2.42□□□□□ -2.02
HMGB1-201ENST00000326004 PSMG2Q969U7 264 aa2.42□□□□□ -2.02
HMGB1-201ENST00000326004 TUBGCP3Q96CW5 907 aa2.42□□□□□ -2.02
HMGB1-201ENST00000326004 C4orf36Q96KX1 117 aa2.42□□□□□ -2.02
Retrieved 100 of 20,778 RNA–protein pairs in 39.7 ms