RNA–Protein interactions for RNA: ENST00000311943.11

SCFD1-201, Transcript of sec1 family domain containing 1, humanhuman

TSL 2

Gene SCFD1, Length 2,016 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-201ENST00000311943 C5orf58C9J3I9 102 aa10.77□□□□□ -0.68
SCFD1-201ENST00000311943 SMNDC1O75940 238 aaKnown RBP eCLIP10.77□□□□□ -0.68
SCFD1-201ENST00000311943 MFN2O95140 757 aa10.77□□□□□ -0.68
SCFD1-201ENST00000311943 ZNF17P17021 662 aa10.77□□□□□ -0.68
SCFD1-201ENST00000311943 NTF4P34130 210 aa10.77□□□□□ -0.68
SCFD1-201ENST00000311943 MSX2P35548 267 aaPredicted RBP10.77□□□□□ -0.68
SCFD1-201ENST00000311943 BCL2A1Q16548 175 aa10.77□□□□□ -0.68
SCFD1-201ENST00000311943 GLYR1Q49A26 553 aaPredicted RBP10.77□□□□□ -0.68
SCFD1-201ENST00000311943 SLC25A53Q5H9E4 307 aa10.77□□□□□ -0.68
SCFD1-201ENST00000311943 REEP3Q6NUK4 255 aa10.77□□□□□ -0.68
SCFD1-201ENST00000311943 MTFR2Q6P444 385 aa10.77□□□□□ -0.68
SCFD1-201ENST00000311943 P4HA3Q7Z4N8 544 aa10.77□□□□□ -0.68
SCFD1-201ENST00000311943 CCDC103Q8IW40 242 aa10.77□□□□□ -0.68
SCFD1-201ENST00000311943 RNF148Q8N7C7 305 aa10.77□□□□□ -0.68
SCFD1-201ENST00000311943 OR2V1Q8NHB1 315 aa10.77□□□□□ -0.68
SCFD1-201ENST00000311943 TAMM41Q96BW9 452 aa10.77□□□□□ -0.68
SCFD1-201ENST00000311943 STARD4Q96DR4 205 aa10.77□□□□□ -0.68
SCFD1-201ENST00000311943 RNF122Q9H9V4 155 aa10.77□□□□□ -0.68
SCFD1-201ENST00000311943 CALHM2Q9HA72 323 aa10.77□□□□□ -0.68
SCFD1-201ENST00000311943 BCL2L10Q9HD36 194 aa10.77□□□□□ -0.68
SCFD1-201ENST00000311943 ACER3Q9NUN7 267 aa10.77□□□□□ -0.68
SCFD1-201ENST00000311943 ARL8BQ9NVJ2 186 aa10.77□□□□□ -0.68
SCFD1-201ENST00000311943 SEC14L4Q9UDX3 406 aa10.77□□□□□ -0.68
SCFD1-201ENST00000311943 ING1Q9UK53 422 aaPredicted RBP10.77□□□□□ -0.68
SCFD1-201ENST00000311943 GMEB1Q9Y692 573 aa10.77□□□□□ -0.68
SCFD1-201ENST00000311943 ABCA12Q86UK0 2595 aa10.77□□□□□ -0.69
SCFD1-201ENST00000311943 FREM1Q5H8C1 2179 aa10.77□□□□□ -0.69
SCFD1-201ENST00000311943 APCP25054 2843 aa10.77□□□□□ -0.69
SCFD1-201ENST00000311943 A0A1W2PNV4 684 aa10.77□□□□□ -0.69
SCFD1-201ENST00000311943 CFAP73A6NFT4 308 aa10.77□□□□□ -0.69
SCFD1-201ENST00000311943 ETV2O00321 342 aaPredicted RBP10.77□□□□□ -0.69
SCFD1-201ENST00000311943 SOX30O94993 753 aa10.77□□□□□ -0.69
SCFD1-201ENST00000311943 RCBTB2O95199 551 aa10.77□□□□□ -0.69
SCFD1-201ENST00000311943 GUSBP08236 651 aa10.77□□□□□ -0.69
SCFD1-201ENST00000311943 TFPIP10646 304 aa10.77□□□□□ -0.69
SCFD1-201ENST00000311943 IMPDH2P12268 514 aa10.77□□□□□ -0.69
SCFD1-201ENST00000311943 PGCP20142 388 aa10.77□□□□□ -0.69
SCFD1-201ENST00000311943 UQCRC1P31930 480 aa10.77□□□□□ -0.69
SCFD1-201ENST00000311943 GCKP35557 465 aa10.77□□□□□ -0.69
SCFD1-201ENST00000311943 ANXA11P50995 505 aaKnown RBP10.77□□□□□ -0.69
SCFD1-201ENST00000311943 PCBP3P57721 371 aaKnown RBP10.77□□□□□ -0.69
SCFD1-201ENST00000311943 CARD18P57730 90 aa10.77□□□□□ -0.69
SCFD1-201ENST00000311943 CHMP1BQ7LBR1 199 aa10.77□□□□□ -0.69
SCFD1-201ENST00000311943 CALHM3Q86XJ0 350 aa10.77□□□□□ -0.69
SCFD1-201ENST00000311943 FAM156AQ8NDB6 213 aa10.77□□□□□ -0.69
SCFD1-201ENST00000311943 WNT2BQ93097 391 aa10.77□□□□□ -0.69
SCFD1-201ENST00000311943 MRGPRX4Q96LA9 322 aa10.77□□□□□ -0.69
SCFD1-201ENST00000311943 ZNF300Q96RE9 604 aaPredicted RBP10.77□□□□□ -0.69
SCFD1-201ENST00000311943 TMEM38AQ9H6F2 299 aa10.77□□□□□ -0.69
SCFD1-201ENST00000311943 C12orf49Q9H741 205 aa10.77□□□□□ -0.69
SCFD1-201ENST00000311943 KCNJ16Q9NPI9 418 aa10.77□□□□□ -0.69
SCFD1-201ENST00000311943 TMEM45AQ9NWC5 275 aa10.77□□□□□ -0.69
SCFD1-201ENST00000311943 KLHL13Q9P2N7 655 aa10.77□□□□□ -0.69
SCFD1-201ENST00000311943 PRR14LQ5THK1 2151 aa10.77□□□□□ -0.69
SCFD1-201ENST00000311943 NME4O00746 187 aa10.76□□□□□ -0.69
SCFD1-201ENST00000311943 SMAD9O15198 467 aaKnown RBP10.76□□□□□ -0.69
SCFD1-201ENST00000311943 CBLP22681 906 aa10.76□□□□□ -0.69
SCFD1-201ENST00000311943 CTSSP25774 331 aa10.76□□□□□ -0.69
SCFD1-201ENST00000311943 NUDT2P50583 147 aa10.76□□□□□ -0.69
SCFD1-201ENST00000311943 SUMO3P55854 103 aaPredicted RBP10.76□□□□□ -0.69
SCFD1-201ENST00000311943 FAM27E3Q08E93 113 aa10.76□□□□□ -0.69
SCFD1-201ENST00000311943 TSC22D1Q15714 1073 aa10.76□□□□□ -0.69
SCFD1-201ENST00000311943 NPTX1Q15818 432 aa10.76□□□□□ -0.69
SCFD1-201ENST00000311943 ZNF239Q16600 458 aaKnown RBP10.76□□□□□ -0.69
SCFD1-201ENST00000311943 LIN52Q52LA3 116 aa10.76□□□□□ -0.69
SCFD1-201ENST00000311943 ANKRD34AQ69YU3 496 aa10.76□□□□□ -0.69
SCFD1-201ENST00000311943 ZNF474Q6S9Z5 364 aaPredicted RBP10.76□□□□□ -0.69
SCFD1-201ENST00000311943 NUFIP2Q7Z417 695 aaKnown RBP10.76□□□□□ -0.69
SCFD1-201ENST00000311943 SLC15A3Q8IY34 581 aa10.76□□□□□ -0.69
SCFD1-201ENST00000311943 ZNF610Q8N9Z0 462 aa10.76□□□□□ -0.69
SCFD1-201ENST00000311943 VANGL1Q8TAA9 524 aaPredicted RBP10.76□□□□□ -0.69
SCFD1-201ENST00000311943 BBS10Q8TAM1 723 aa10.76□□□□□ -0.69
SCFD1-201ENST00000311943 LINC01560Q8TB33 94 aa10.76□□□□□ -0.69
SCFD1-201ENST00000311943 TSPEARQ8WU66 669 aa10.76□□□□□ -0.69
SCFD1-201ENST00000311943 NRGNQ92686 78 aa10.76□□□□□ -0.69
SCFD1-201ENST00000311943 MARVELD3Q96A59 401 aa10.76□□□□□ -0.69
SCFD1-201ENST00000311943 CCT8L2Q96SF2 557 aa10.76□□□□□ -0.69
SCFD1-201ENST00000311943 POLQO75417 2590 aa10.76□□□□□ -0.69
SCFD1-201ENST00000311943 TMED7-TICAM2A0A0A6YYA0 188 aa10.75□□□□□ -0.69
SCFD1-201ENST00000311943 FAM47E-STBD1D6RA91 191 aa10.75□□□□□ -0.69
SCFD1-201ENST00000311943 LRRN3E7EW58 273 aa10.75□□□□□ -0.69
SCFD1-201ENST00000311943 THY1P04216 161 aa10.75□□□□□ -0.69
SCFD1-201ENST00000311943 AGAP20933 346 aa10.75□□□□□ -0.69
SCFD1-201ENST00000311943 ME2P23368 584 aa10.75□□□□□ -0.69
SCFD1-201ENST00000311943 PTGER4P35408 488 aa10.75□□□□□ -0.69
SCFD1-201ENST00000311943 DIO1P49895 249 aa10.75□□□□□ -0.69
SCFD1-201ENST00000311943 MYBPHQ13203 477 aa10.75□□□□□ -0.69
SCFD1-201ENST00000311943 VMACQ2NL98 169 aa10.75□□□□□ -0.69
SCFD1-201ENST00000311943 SYT14P1Q58G82 188 aa10.75□□□□□ -0.69
SCFD1-201ENST00000311943 RNF220Q5VTB9 566 aa10.75□□□□□ -0.69
SCFD1-201ENST00000311943 MEX3BQ6ZN04 569 aaKnown RBP10.75□□□□□ -0.69
SCFD1-201ENST00000311943 ESPNLQ6ZVH7 1005 aa10.75□□□□□ -0.69
SCFD1-201ENST00000311943 NET1Q7Z628 596 aaPredicted RBP10.75□□□□□ -0.69
SCFD1-201ENST00000311943 TUSC5Q8IXB3 177 aa10.75□□□□□ -0.69
SCFD1-201ENST00000311943 RBM15BQ8NDT2 890 aaKnown RBP10.75□□□□□ -0.69
SCFD1-201ENST00000311943 GPATCH1Q9BRR8 931 aaKnown RBP10.75□□□□□ -0.69
SCFD1-201ENST00000311943 SPATA9Q9BWV2 254 aa10.75□□□□□ -0.69
SCFD1-201ENST00000311943 EXOSC3Q9NQT5 275 aaKnown RBP10.75□□□□□ -0.69
SCFD1-201ENST00000311943 TMED7Q9Y3B3 224 aa10.75□□□□□ -0.69
SCFD1-201ENST00000311943 HSPB2A8KAH6 182 aa10.75□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 27.6 ms