RNA–Protein interactions for RNA: ENST00000272322.8

VPS54-201, Transcript of VPS54, GARP complex subunit, humanhuman

APPRIS P3 TSL 5 BASIC

Gene VPS54, Length 3,463 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-201ENST00000272322 PRSS45Q7RTY3 260 aa15.35■□□□□ 0.05
VPS54-201ENST00000272322 SLC44A3Q8N4M1 653 aa15.35■□□□□ 0.05
VPS54-201ENST00000272322 CDRT4Q8N9R6 151 aa15.35■□□□□ 0.05
VPS54-201ENST00000272322 BEST4Q8NFU0 473 aa15.35■□□□□ 0.05
VPS54-201ENST00000272322 OR4D9Q8NGE8 314 aa15.35■□□□□ 0.05
VPS54-201ENST00000272322 OR5M3Q8NGP4 307 aa15.35■□□□□ 0.05
VPS54-201ENST00000272322 ZPLD1Q8TCW7 415 aa15.35■□□□□ 0.05
VPS54-201ENST00000272322 PHF21AQ96BD5 680 aa15.35■□□□□ 0.05
VPS54-201ENST00000272322 SDK2Q58EX2 2172 aa15.35■□□□□ 0.05
VPS54-201ENST00000272322 CBX7O95931 251 aa15.35■□□□□ 0.05
VPS54-201ENST00000272322 SNRPBP14678 240 aaKnown RBP15.35■□□□□ 0.05
VPS54-201ENST00000272322 TNFRSF4P43489 277 aa15.35■□□□□ 0.05
VPS54-201ENST00000272322 MAP2K3P46734 347 aa15.35■□□□□ 0.05
VPS54-201ENST00000272322 ERVK-25P63136 954 aa15.35■□□□□ 0.05
VPS54-201ENST00000272322 PSG6Q00889 435 aa15.35■□□□□ 0.05
VPS54-201ENST00000272322 CA13Q8N1Q1 262 aa15.35■□□□□ 0.05
VPS54-201ENST00000272322 CLDN22Q8N7P3 220 aa15.35■□□□□ 0.05
VPS54-201ENST00000272322 RCBTB1Q8NDN9 531 aa15.35■□□□□ 0.05
VPS54-201ENST00000272322 PIGKQ92643 395 aa15.35■□□□□ 0.05
VPS54-201ENST00000272322 GHSRQ92847 366 aa15.35■□□□□ 0.05
VPS54-201ENST00000272322 RNF121Q9H920 327 aa15.35■□□□□ 0.05
VPS54-201ENST00000272322 RPS6KB2Q9UBS0 482 aa15.35■□□□□ 0.05
VPS54-201ENST00000272322 GNG8Q9UK08 70 aa15.35■□□□□ 0.05
VPS54-201ENST00000272322 TGFBR3LH3BV60 316 aa15.34■□□□□ 0.05
VPS54-201ENST00000272322 HIST1H1CP16403 213 aaKnown RBP15.34■□□□□ 0.05
VPS54-201ENST00000272322 SHISA6Q6ZSJ9 500 aa15.34■□□□□ 0.05
VPS54-201ENST00000272322 RASD2Q96D21 266 aa15.34■□□□□ 0.05
VPS54-201ENST00000272322 GAL3ST4Q96RP7 486 aa15.34■□□□□ 0.05
VPS54-201ENST00000272322 KLHDC3Q9BQ90 382 aa15.34■□□□□ 0.05
VPS54-201ENST00000272322 SLC25A18Q9H1K4 315 aa15.34■□□□□ 0.05
VPS54-201ENST00000272322 ENAMQ9NRM1 1142 aa15.34■□□□□ 0.05
VPS54-201ENST00000272322 SIGLEC7Q9Y286 467 aa15.34■□□□□ 0.05
VPS54-201ENST00000272322 PRR19A6NJB7 356 aa15.34■□□□□ 0.05
VPS54-201ENST00000272322 KHNYNO15037 678 aaKnown RBP15.34■□□□□ 0.05
VPS54-201ENST00000272322 GALR3O60755 368 aaPredicted RBP15.34■□□□□ 0.05
VPS54-201ENST00000272322 TNFP01375 233 aa15.34■□□□□ 0.05
VPS54-201ENST00000272322 EIF4EP06730 217 aaKnown RBP15.34■□□□□ 0.05
VPS54-201ENST00000272322 PTHLHP12272 177 aa15.34■□□□□ 0.05
VPS54-201ENST00000272322 OR4M1Q8NGD0 313 aa15.34■□□□□ 0.05
VPS54-201ENST00000272322 BAHD1Q8TBE0 780 aaPredicted RBP15.34■□□□□ 0.05
VPS54-201ENST00000272322 MSLNLQ96KJ4 702 aa15.34■□□□□ 0.05
VPS54-201ENST00000272322 TGM7Q96PF1 710 aa15.34■□□□□ 0.05
VPS54-201ENST00000272322 GABRG3Q99928 467 aa15.34■□□□□ 0.05
VPS54-201ENST00000272322 ZNF649Q9BS31 505 aa15.34■□□□□ 0.05
VPS54-201ENST00000272322 MSRAQ9UJ68 235 aa15.34■□□□□ 0.05
VPS54-201ENST00000272322 PCDHGB2Q9Y5G2 931 aa15.34■□□□□ 0.05
VPS54-201ENST00000272322 TRDV1A0A1B0GX56 115 aa15.34■□□□□ 0.05
VPS54-201ENST00000272322 RAD1O60671 282 aa15.34■□□□□ 0.05
VPS54-201ENST00000272322 EIPR1Q53HC9 387 aa15.34■□□□□ 0.05
VPS54-201ENST00000272322 KIRREL2Q6UWL6 708 aa15.34■□□□□ 0.05
VPS54-201ENST00000272322 OR8K3Q8NH51 312 aa15.34■□□□□ 0.05
VPS54-201ENST00000272322 FAM174AQ8TBP5 190 aa15.34■□□□□ 0.05
VPS54-201ENST00000272322 ANKRD9Q96BM1 317 aaPredicted RBP15.34■□□□□ 0.05
VPS54-201ENST00000272322 GAL3ST1Q99999 423 aa15.34■□□□□ 0.05
VPS54-201ENST00000272322 PNO1Q9NRX1 252 aaKnown RBP15.34■□□□□ 0.05
VPS54-201ENST00000272322 DZANK1Q9NVP4 752 aa15.34■□□□□ 0.05
VPS54-201ENST00000272322 MCIDASD6RGH6 385 aa15.33■□□□□ 0.05
VPS54-201ENST00000272322 BHLHE40O14503 412 aa15.33■□□□□ 0.05
VPS54-201ENST00000272322 F13BP05160 661 aa15.33■□□□□ 0.05
VPS54-201ENST00000272322 OR1D4P47884 311 aa15.33■□□□□ 0.05
VPS54-201ENST00000272322 FAAH2Q6GMR7 532 aa15.33■□□□□ 0.05
VPS54-201ENST00000272322 GJD3Q8N144 294 aa15.33■□□□□ 0.05
VPS54-201ENST00000272322 ZNF511Q8NB15 262 aa15.33■□□□□ 0.05
VPS54-201ENST00000272322 OR5H6Q8NGV6 325 aa15.33■□□□□ 0.05
VPS54-201ENST00000272322 ELF4Q99607 663 aaPredicted RBP15.33■□□□□ 0.05
VPS54-201ENST00000272322 CTRCQ99895 268 aa15.33■□□□□ 0.05
VPS54-201ENST00000272322 NDC1Q9BTX1 674 aa15.33■□□□□ 0.05
VPS54-201ENST00000272322 FAM186AA6NE01 2351 aa15.33■□□□□ 0.04
VPS54-201ENST00000272322 LYRM1O43325 122 aa15.33■□□□□ 0.04
VPS54-201ENST00000272322 MAGEA8P43361 318 aa15.33■□□□□ 0.04
VPS54-201ENST00000272322 GFERP55789 205 aa15.33■□□□□ 0.04
VPS54-201ENST00000272322 TIGD4Q8IY51 512 aa15.33■□□□□ 0.04
VPS54-201ENST00000272322 ARIH2OSQ8N7S6 290 aa15.33■□□□□ 0.04
VPS54-201ENST00000272322 ZNF321PQ8N8H1 164 aa15.33■□□□□ 0.04
VPS54-201ENST00000272322 ZNF485Q8NCK3 441 aa15.33■□□□□ 0.04
VPS54-201ENST00000272322 SNX33Q8WV41 574 aa15.33■□□□□ 0.04
VPS54-201ENST00000272322 TM4SF19Q96DZ7 209 aa15.33■□□□□ 0.04
VPS54-201ENST00000272322 ZNF764Q96H86 408 aaPredicted RBP15.33■□□□□ 0.04
VPS54-201ENST00000272322 SRA1Q9HD15 236 aaKnown RBP15.33■□□□□ 0.04
VPS54-201ENST00000272322 KRCC1Q9NPI7 259 aaPredicted RBP15.33■□□□□ 0.04
VPS54-201ENST00000272322 ING1Q9UK53 422 aaPredicted RBP15.33■□□□□ 0.04
VPS54-201ENST00000272322 SELENOFO60613 162 aa15.33■□□□□ 0.04
VPS54-201ENST00000272322 CSTAP01040 98 aa15.33■□□□□ 0.04
VPS54-201ENST00000272322 HPGDP15428 266 aa15.33■□□□□ 0.04
VPS54-201ENST00000272322 ACSM3Q53FZ2 586 aa15.33■□□□□ 0.04
VPS54-201ENST00000272322 UPRTQ96BW1 309 aa15.33■□□□□ 0.04
VPS54-201ENST00000272322 OR8D2Q9GZM6 311 aa15.33■□□□□ 0.04
VPS54-201ENST00000272322 TRIM36Q9NQ86 728 aa15.33■□□□□ 0.04
VPS54-201ENST00000272322 MCUBQ9NWR8 336 aa15.33■□□□□ 0.04
VPS54-201ENST00000272322 ALG5Q9Y673 324 aa15.33■□□□□ 0.04
VPS54-201ENST00000272322 A0A1B0GTH9 108 aa15.32■□□□□ 0.04
VPS54-201ENST00000272322 STK25O00506 426 aa15.32■□□□□ 0.04
VPS54-201ENST00000272322 RCBTB2O95199 551 aa15.32■□□□□ 0.04
VPS54-201ENST00000272322 GPANK1O95872 356 aa15.32■□□□□ 0.04
VPS54-201ENST00000272322 SBK2P0C263 348 aa15.32■□□□□ 0.04
VPS54-201ENST00000272322 SOX2P48431 317 aa15.32■□□□□ 0.04
VPS54-201ENST00000272322 CENPAP49450 140 aa15.32■□□□□ 0.04
VPS54-201ENST00000272322 EVX1P49640 407 aa15.32■□□□□ 0.04
VPS54-201ENST00000272322 YIPF7Q8N8F6 280 aa15.32■□□□□ 0.04
VPS54-201ENST00000272322 TIMP4Q99727 224 aa15.32■□□□□ 0.04
Retrieved 100 of 20,778 RNA–protein pairs in 39.5 ms