RNA–Protein interactions for RNA: ENST00000271628.8

SF3B4-201, Transcript of splicing factor 3b subunit 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SF3B4, Length 2,085 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B4-201ENST00000271628 RNF167Q9H6Y7 350 aa14.06□□□□□ -0.16
SF3B4-201ENST00000271628 SIAEQ9HAT2 523 aa14.06□□□□□ -0.16
SF3B4-201ENST00000271628 ATP13A2Q9NQ11 1180 aa14.06□□□□□ -0.16
SF3B4-201ENST00000271628 MEPEQ9NQ76 525 aaPredicted RBP14.06□□□□□ -0.16
SF3B4-201ENST00000271628 SLC22A11Q9NSA0 550 aa14.06□□□□□ -0.16
SF3B4-201ENST00000271628 CRNNQ9UBG3 495 aaPredicted RBP14.06□□□□□ -0.16
SF3B4-201ENST00000271628 CTSFQ9UBX1 484 aa14.06□□□□□ -0.16
SF3B4-201ENST00000271628 A0A075B6Q4 140 aa14.06□□□□□ -0.16
SF3B4-201ENST00000271628 KDM4EB2RXH2 506 aaPredicted RBP14.06□□□□□ -0.16
SF3B4-201ENST00000271628 TO15178 435 aa14.06□□□□□ -0.16
SF3B4-201ENST00000271628 SAGP10523 405 aaPredicted RBP14.06□□□□□ -0.16
SF3B4-201ENST00000271628 ZNF528Q3MIS6 628 aa14.06□□□□□ -0.16
SF3B4-201ENST00000271628 BCDIN3DQ7Z5W3 292 aaKnown RBP14.06□□□□□ -0.16
SF3B4-201ENST00000271628 SLC34A3Q8N130 599 aa14.06□□□□□ -0.16
SF3B4-201ENST00000271628 SLC43A2Q8N370 569 aa14.06□□□□□ -0.16
SF3B4-201ENST00000271628 FAM71CQ8NEG0 241 aa14.06□□□□□ -0.16
SF3B4-201ENST00000271628 C17orf47Q8NEP4 570 aa14.06□□□□□ -0.16
SF3B4-201ENST00000271628 PROKR2Q8NFJ6 384 aa14.06□□□□□ -0.16
SF3B4-201ENST00000271628 OR4Q3Q8NH05 313 aa14.06□□□□□ -0.16
SF3B4-201ENST00000271628 FANK1Q8TC84 345 aa14.06□□□□□ -0.16
SF3B4-201ENST00000271628 HTRA1Q92743 480 aa14.06□□□□□ -0.16
SF3B4-201ENST00000271628 MND1Q9BWT6 205 aa14.06□□□□□ -0.16
SF3B4-201ENST00000271628 UBQLN3Q9H347 655 aa14.06□□□□□ -0.16
SF3B4-201ENST00000271628 HHATLQ9HCP6 504 aa14.06□□□□□ -0.16
SF3B4-201ENST00000271628 EXOSC3Q9NQT5 275 aaKnown RBP14.06□□□□□ -0.16
SF3B4-201ENST00000271628 QPCTLQ9NXS2 382 aa14.06□□□□□ -0.16
SF3B4-201ENST00000271628 DIMT1Q9UNQ2 313 aaKnown RBP14.06□□□□□ -0.16
SF3B4-201ENST00000271628 PCDHGB6Q9Y5F9 930 aa14.06□□□□□ -0.16
SF3B4-201ENST00000271628 HTR3EA5X5Y0 456 aa14.05□□□□□ -0.16
SF3B4-201ENST00000271628 HCN1O60741 890 aa14.05□□□□□ -0.16
SF3B4-201ENST00000271628 RAB36O95755 333 aa14.05□□□□□ -0.16
SF3B4-201ENST00000271628 ONECUT2O95948 504 aa14.05□□□□□ -0.16
SF3B4-201ENST00000271628 IL12BP29460 328 aa14.05□□□□□ -0.16
SF3B4-201ENST00000271628 PWWP2BQ6NUJ5 590 aa14.05□□□□□ -0.16
SF3B4-201ENST00000271628 SMARCD3Q6STE5 483 aa14.05□□□□□ -0.16
SF3B4-201ENST00000271628 CCDC190Q86UF4 302 aa14.05□□□□□ -0.16
SF3B4-201ENST00000271628 C9orf40Q8IXQ3 194 aa14.05□□□□□ -0.16
SF3B4-201ENST00000271628 SLC38A9Q8NBW4 561 aa14.05□□□□□ -0.16
SF3B4-201ENST00000271628 GALNT6Q8NCL4 622 aa14.05□□□□□ -0.16
SF3B4-201ENST00000271628 LMF1Q96S06 567 aa14.05□□□□□ -0.16
SF3B4-201ENST00000271628 CCDC32Q9BV29 185 aa14.05□□□□□ -0.16
SF3B4-201ENST00000271628 WWTR1Q9GZV5 400 aa14.05□□□□□ -0.16
SF3B4-201ENST00000271628 TAS2R16Q9NYV7 291 aa14.05□□□□□ -0.16
SF3B4-201ENST00000271628 H2AFY2Q9P0M6 372 aaPredicted RBP14.05□□□□□ -0.16
SF3B4-201ENST00000271628 SIGLEC7Q9Y286 467 aa14.05□□□□□ -0.16
SF3B4-201ENST00000271628 GPR52Q9Y2T5 361 aa14.05□□□□□ -0.16
SF3B4-201ENST00000271628 GTPBP1O00178 669 aaKnown RBP14.05□□□□□ -0.16
SF3B4-201ENST00000271628 SNPHO15079 494 aa14.05□□□□□ -0.16
SF3B4-201ENST00000271628 ZNF264O43296 627 aa14.05□□□□□ -0.16
SF3B4-201ENST00000271628 UTS2O95399 124 aa14.05□□□□□ -0.16
SF3B4-201ENST00000271628 DLGAP3O95886 979 aa14.05□□□□□ -0.16
SF3B4-201ENST00000271628 CH25HO95992 272 aa14.05□□□□□ -0.16
SF3B4-201ENST00000271628 HEXBP07686 556 aa14.05□□□□□ -0.16
SF3B4-201ENST00000271628 UBL4AP11441 157 aa14.05□□□□□ -0.16
SF3B4-201ENST00000271628 ENDOUP21128 410 aaKnown RBP14.05□□□□□ -0.16
SF3B4-201ENST00000271628 PTNP21246 168 aa14.05□□□□□ -0.16
SF3B4-201ENST00000271628 MTNR1AP48039 350 aa14.05□□□□□ -0.16
SF3B4-201ENST00000271628 SELENBP1Q13228 472 aa14.05□□□□□ -0.16
SF3B4-201ENST00000271628 TRA2AQ13595 282 aaKnown RBP eCLIP14.05□□□□□ -0.16
SF3B4-201ENST00000271628 C1DQ13901 141 aaKnown RBP14.05□□□□□ -0.16
SF3B4-201ENST00000271628 IL11RAQ14626 422 aa14.05□□□□□ -0.16
SF3B4-201ENST00000271628 FNDC7Q5VTL7 733 aa14.05□□□□□ -0.16
SF3B4-201ENST00000271628 NXNL2Q5VZ03 156 aa14.05□□□□□ -0.16
SF3B4-201ENST00000271628 KIRREL2Q6UWL6 708 aa14.05□□□□□ -0.16
SF3B4-201ENST00000271628 HSDL2Q6YN16 418 aa14.05□□□□□ -0.16
SF3B4-201ENST00000271628 OVCH1Q7RTY7 1134 aa14.05□□□□□ -0.16
SF3B4-201ENST00000271628 FAM83FQ8NEG4 500 aaPredicted RBP14.05□□□□□ -0.16
SF3B4-201ENST00000271628 OR2I1PQ8NGU4 316 aa14.05□□□□□ -0.16
SF3B4-201ENST00000271628 PHOSPHO1Q8TCT1 267 aa14.05□□□□□ -0.16
SF3B4-201ENST00000271628 NECAB3Q96P71 396 aaPredicted RBP14.05□□□□□ -0.16
SF3B4-201ENST00000271628 ADOQ96SZ5 270 aa14.05□□□□□ -0.16
SF3B4-201ENST00000271628 GTPBP2Q9BX10 602 aaKnown RBP14.05□□□□□ -0.16
SF3B4-201ENST00000271628 FN3KQ9H479 309 aa14.05□□□□□ -0.16
SF3B4-201ENST00000271628 SACM1LQ9NTJ5 587 aa14.05□□□□□ -0.16
SF3B4-201ENST00000271628 FER1L5A0AVI2 2057 aa14.04□□□□□ -0.16
SF3B4-201ENST00000271628 A0A087WUJ7 227 aa14.04□□□□□ -0.16
SF3B4-201ENST00000271628 REM1O75628 298 aa14.04□□□□□ -0.16
SF3B4-201ENST00000271628 TIAF1O95411 115 aa14.04□□□□□ -0.16
SF3B4-201ENST00000271628 APOA1P02647 267 aa14.04□□□□□ -0.16
SF3B4-201ENST00000271628 ADRA2AP08913 450 aa14.04□□□□□ -0.16
SF3B4-201ENST00000271628 GTF2E2P29084 291 aaKnown RBP14.04□□□□□ -0.16
SF3B4-201ENST00000271628 NR0B1P51843 470 aaKnown RBP14.04□□□□□ -0.16
SF3B4-201ENST00000271628 PNLIPRP2P54317 469 aa14.04□□□□□ -0.16
SF3B4-201ENST00000271628 SSX1Q16384 188 aa14.04□□□□□ -0.16
SF3B4-201ENST00000271628 PHF19Q5T6S3 580 aa14.04□□□□□ -0.16
SF3B4-201ENST00000271628 AADACL4Q5VUY2 407 aa14.04□□□□□ -0.16
SF3B4-201ENST00000271628 WBP2NLQ6ICG8 309 aa14.04□□□□□ -0.16
SF3B4-201ENST00000271628 RTL4Q6ZR62 310 aa14.04□□□□□ -0.16
SF3B4-201ENST00000271628 OAFQ86UD1 273 aa14.04□□□□□ -0.16
SF3B4-201ENST00000271628 LNX2Q8N448 690 aa14.04□□□□□ -0.16
SF3B4-201ENST00000271628 NANOGP1Q8N7R0 232 aa14.04□□□□□ -0.16
SF3B4-201ENST00000271628 ZBTB44Q8NCP5 570 aa14.04□□□□□ -0.16
SF3B4-201ENST00000271628 CHAC2Q8WUX2 184 aa14.04□□□□□ -0.16
SF3B4-201ENST00000271628 METTL21AQ8WXB1 218 aa14.04□□□□□ -0.16
SF3B4-201ENST00000271628 OPALINQ96PE5 141 aa14.04□□□□□ -0.16
SF3B4-201ENST00000271628 SLC19A3Q9BZV2 496 aa14.04□□□□□ -0.16
SF3B4-201ENST00000271628 FGF20Q9NP95 211 aaPredicted RBP14.04□□□□□ -0.16
SF3B4-201ENST00000271628 IL20RAQ9UHF4 553 aa14.04□□□□□ -0.16
SF3B4-201ENST00000271628 BAIAP2Q9UQB8 552 aa14.04□□□□□ -0.16
SF3B4-201ENST00000271628 LSM2Q9Y333 95 aaKnown RBP14.04□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 21.5 ms