RNA–Protein interactions for RNA: ENST00000263398.10

CD44-201, Transcript of CD44 molecule (Indian blood group), humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CD44, Length 4,589 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-201ENST00000263398 IL17RCQ8NAC3 791 aa10.04□□□□□ -0.8
CD44-201ENST00000263398 OLIG1Q8TAK6 271 aa10.04□□□□□ -0.8
CD44-201ENST00000263398 FOXRED1Q96CU9 486 aaPredicted RBP10.04□□□□□ -0.8
CD44-201ENST00000263398 P2RY12Q9H244 342 aa10.04□□□□□ -0.8
CD44-201ENST00000263398 NOX3Q9HBY0 568 aa10.04□□□□□ -0.8
CD44-201ENST00000263398 STARD5Q9NSY2 213 aa10.04□□□□□ -0.8
CD44-201ENST00000263398 MYEF2Q9P2K5 600 aaKnown RBP10.04□□□□□ -0.8
CD44-201ENST00000263398 VDAC3Q9Y277 283 aa10.04□□□□□ -0.8
CD44-201ENST00000263398 GGT3PA6NGU5 568 aa10.04□□□□□ -0.8
CD44-201ENST00000263398 H0YGG7 62 aa10.04□□□□□ -0.8
CD44-201ENST00000263398 KNG1P01042 644 aa10.04□□□□□ -0.8
CD44-201ENST00000263398 SMIM18P0DKX4 95 aa10.04□□□□□ -0.8
CD44-201ENST00000263398 SFTPDP35247 375 aa10.04□□□□□ -0.8
CD44-201ENST00000263398 GK2Q14410 553 aaPredicted RBP10.04□□□□□ -0.8
CD44-201ENST00000263398 HBMQ6B0K9 141 aa10.04□□□□□ -0.8
CD44-201ENST00000263398 NLRP8Q86W28 1048 aa10.04□□□□□ -0.8
CD44-201ENST00000263398 SGPP2Q8IWX5 399 aa10.04□□□□□ -0.8
CD44-201ENST00000263398 NLGN4XQ8N0W4 816 aa10.04□□□□□ -0.8
CD44-201ENST00000263398 OR51T1Q8NGJ9 327 aa10.04□□□□□ -0.8
CD44-201ENST00000263398 OR5D14Q8NGL3 314 aa10.04□□□□□ -0.8
CD44-201ENST00000263398 OR13C2Q8NGS9 318 aa10.04□□□□□ -0.8
CD44-201ENST00000263398 TBC1D20Q96BZ9 403 aa10.04□□□□□ -0.8
CD44-201ENST00000263398 C16orf58Q96GQ5 468 aa10.04□□□□□ -0.8
CD44-201ENST00000263398 SPIN2AQ99865 258 aa10.04□□□□□ -0.8
CD44-201ENST00000263398 SPIN2BQ9BPZ2 258 aa10.04□□□□□ -0.8
CD44-201ENST00000263398 ZNF160Q9HCG1 818 aa10.04□□□□□ -0.8
CD44-201ENST00000263398 MAN2C1Q9NTJ4 1040 aa10.04□□□□□ -0.8
CD44-201ENST00000263398 TXNL4BQ9NX01 149 aaKnown RBP10.04□□□□□ -0.8
CD44-201ENST00000263398 DNMT3BQ9UBC3 853 aaKnown RBP10.04□□□□□ -0.8
CD44-201ENST00000263398 ZNF281Q9Y2X9 895 aa10.04□□□□□ -0.8
CD44-201ENST00000263398 COL22A1Q8NFW1 1626 aaPredicted RBP10.04□□□□□ -0.8
CD44-201ENST00000263398 AQP9O43315 295 aa10.04□□□□□ -0.8
CD44-201ENST00000263398 CACNG3O60359 315 aa10.04□□□□□ -0.8
CD44-201ENST00000263398 HTR3BO95264 441 aa10.04□□□□□ -0.8
CD44-201ENST00000263398 LCATP04180 440 aa10.04□□□□□ -0.8
CD44-201ENST00000263398 S100PP25815 95 aa10.04□□□□□ -0.8
CD44-201ENST00000263398 PTPN6P29350 595 aa10.04□□□□□ -0.8
CD44-201ENST00000263398 GJA4P35212 333 aa10.04□□□□□ -0.8
CD44-201ENST00000263398 HTR3AP46098 478 aa10.04□□□□□ -0.8
CD44-201ENST00000263398 PFN3P60673 137 aa10.04□□□□□ -0.8
CD44-201ENST00000263398 RAP2BP61225 183 aa10.04□□□□□ -0.8
CD44-201ENST00000263398 S100A12P80511 92 aa10.04□□□□□ -0.8
CD44-201ENST00000263398 GPR18Q14330 331 aa10.04□□□□□ -0.8
CD44-201ENST00000263398 P2RY14Q15391 338 aa10.04□□□□□ -0.8
CD44-201ENST00000263398 HENMT1Q5T8I9 393 aaKnown RBP10.04□□□□□ -0.8
CD44-201ENST00000263398 LAX1Q8IWV1 398 aa10.04□□□□□ -0.8
CD44-201ENST00000263398 ZSCAN1Q8NBB4 408 aa10.04□□□□□ -0.8
CD44-201ENST00000263398 CHTF18Q8WVB6 975 aa10.04□□□□□ -0.8
CD44-201ENST00000263398 OR5M11Q96RB7 305 aa10.04□□□□□ -0.8
CD44-201ENST00000263398 SIDT1Q9NXL6 827 aaKnown RBP10.04□□□□□ -0.8
CD44-201ENST00000263398 FTSJ1Q9UET6 329 aa10.04□□□□□ -0.8
CD44-201ENST00000263398 BRWD1Q9NSI6 2320 aa10.04□□□□□ -0.8
CD44-201ENST00000263398 CDHR4A6H8M9 788 aa10.04□□□□□ -0.8
CD44-201ENST00000263398 ELAVL4P26378 380 aaKnown RBP10.04□□□□□ -0.8
CD44-201ENST00000263398 CASP3P42574 277 aa10.04□□□□□ -0.8
CD44-201ENST00000263398 CAV3P56539 151 aa10.04□□□□□ -0.8
CD44-201ENST00000263398 ISL1P61371 349 aa10.04□□□□□ -0.8
CD44-201ENST00000263398 TNFRSF17Q02223 184 aa10.04□□□□□ -0.8
CD44-201ENST00000263398 SLX4IPQ5VYV7 408 aa10.04□□□□□ -0.8
CD44-201ENST00000263398 NXNL2Q5VZ03 156 aa10.04□□□□□ -0.8
CD44-201ENST00000263398 C12orf45Q8N5I9 185 aaPredicted RBP10.04□□□□□ -0.8
CD44-201ENST00000263398 TOMM40LQ969M1 308 aa10.04□□□□□ -0.8
CD44-201ENST00000263398 NIPSNAP1Q9BPW8 284 aa10.04□□□□□ -0.8
CD44-201ENST00000263398 SIAEQ9HAT2 523 aa10.04□□□□□ -0.8
CD44-201ENST00000263398 A4GALTQ9NPC4 353 aa10.04□□□□□ -0.8
CD44-201ENST00000263398 RCE1Q9Y256 329 aa10.04□□□□□ -0.8
CD44-201ENST00000263398 CACNA1CQ13936 2221 aa10.04□□□□□ -0.8
CD44-201ENST00000263398 SRCAPQ6ZRS2 3230 aa10.04□□□□□ -0.8
CD44-201ENST00000263398 A0A0A6YYH2 397 aa10.03□□□□□ -0.8
CD44-201ENST00000263398 A6NJ64 397 aa10.03□□□□□ -0.8
CD44-201ENST00000263398 F8W036 122 aa10.03□□□□□ -0.8
CD44-201ENST00000263398 SSX5O60225 188 aa10.03□□□□□ -0.8
CD44-201ENST00000263398 FZD7O75084 574 aa10.03□□□□□ -0.8
CD44-201ENST00000263398 TSPAN15O95858 294 aa10.03□□□□□ -0.8
CD44-201ENST00000263398 MT-ND4P03905 459 aa10.03□□□□□ -0.8
CD44-201ENST00000263398 NPPBP16860 134 aa10.03□□□□□ -0.8
CD44-201ENST00000263398 TUBG1P23258 451 aa10.03□□□□□ -0.8
CD44-201ENST00000263398 DLSTP36957 453 aa10.03□□□□□ -0.8
CD44-201ENST00000263398 DCAF7P61962 342 aa10.03□□□□□ -0.8
CD44-201ENST00000263398 BLOC1S1P78537 153 aa10.03□□□□□ -0.8
CD44-201ENST00000263398 REEP5Q00765 189 aa10.03□□□□□ -0.8
CD44-201ENST00000263398 COX20Q5RI15 118 aa10.03□□□□□ -0.8
CD44-201ENST00000263398 MBOAT2Q6ZWT7 520 aa10.03□□□□□ -0.8
CD44-201ENST00000263398 SIMC1Q8NDZ2 872 aa10.03□□□□□ -0.8
CD44-201ENST00000263398 FAM83FQ8NEG4 500 aaPredicted RBP10.03□□□□□ -0.8
CD44-201ENST00000263398 OR9A4Q8NGU2 314 aa10.03□□□□□ -0.8
CD44-201ENST00000263398 DCUN1D4Q92564 292 aa10.03□□□□□ -0.8
CD44-201ENST00000263398 ARRDC3Q96B67 414 aa10.03□□□□□ -0.8
CD44-201ENST00000263398 ZNF582Q96NG8 517 aaPredicted RBP10.03□□□□□ -0.8
CD44-201ENST00000263398 OR5B2Q96R09 309 aa10.03□□□□□ -0.8
CD44-201ENST00000263398 QRSL1Q9H0R6 528 aaKnown RBP10.03□□□□□ -0.8
CD44-201ENST00000263398 TMPRSS11EQ9UL52 423 aa10.03□□□□□ -0.8
CD44-201ENST00000263398 F5H5K5 113 aa10.03□□□□□ -0.8
CD44-201ENST00000263398 ZNF195O14628 629 aa10.03□□□□□ -0.8
CD44-201ENST00000263398 OR2T7P0C7T2 308 aa10.03□□□□□ -0.8
CD44-201ENST00000263398 TAS2R19P59542 299 aa10.03□□□□□ -0.8
CD44-201ENST00000263398 IL13RA1P78552 427 aa10.03□□□□□ -0.8
CD44-201ENST00000263398 FAM71E1Q6IPT2 247 aa10.03□□□□□ -0.8
CD44-201ENST00000263398 TBPL2Q6SJ96 375 aa10.03□□□□□ -0.8
CD44-201ENST00000263398 SH2D5Q6ZV89 423 aa10.03□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 55.9 ms