RNA–Protein interactions for RNA: ENST00000252444.9

LDLR-201, Transcript of low density lipoprotein receptor, humanhuman

APPRIS ALT2 TSL 1 (best)

Gene LDLR, Length 5,337 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-201ENST00000252444 OR8K3Q8NH51 312 aa12.65□□□□□ -0.38
LDLR-201ENST00000252444 TFAP2CQ92754 450 aa12.65□□□□□ -0.38
LDLR-201ENST00000252444 SERGEFQ9UGK8 458 aa12.65□□□□□ -0.38
LDLR-201ENST00000252444 NUFIP1Q9UHK0 495 aaKnown RBP12.65□□□□□ -0.38
LDLR-201ENST00000252444 PCDHGA1Q9Y5H4 931 aa12.65□□□□□ -0.38
LDLR-201ENST00000252444 WDPCPO95876 746 aa12.64□□□□□ -0.39
LDLR-201ENST00000252444 HRGP04196 525 aa12.64□□□□□ -0.39
LDLR-201ENST00000252444 CAMK1Q14012 370 aa12.64□□□□□ -0.39
LDLR-201ENST00000252444 OR7A5Q15622 319 aa12.64□□□□□ -0.39
LDLR-201ENST00000252444 PLPP5Q8NEB5 264 aa12.64□□□□□ -0.39
LDLR-201ENST00000252444 CLDN23Q96B33 292 aa12.64□□□□□ -0.39
LDLR-201ENST00000252444 MOCOSQ96EN8 888 aa12.64□□□□□ -0.39
LDLR-201ENST00000252444 FCRL1Q96LA6 429 aa12.64□□□□□ -0.39
LDLR-201ENST00000252444 DPH1Q9BZG8 443 aa12.64□□□□□ -0.39
LDLR-201ENST00000252444 EXOSC3Q9NQT5 275 aaKnown RBP12.64□□□□□ -0.39
LDLR-201ENST00000252444 SSNA1O43805 119 aa12.64□□□□□ -0.39
LDLR-201ENST00000252444 C1QAP02745 245 aa12.64□□□□□ -0.39
LDLR-201ENST00000252444 PIPP12273 146 aaPredicted RBP12.64□□□□□ -0.39
LDLR-201ENST00000252444 NXNL2Q5VZ03 156 aa12.64□□□□□ -0.39
LDLR-201ENST00000252444 FRMPD2BQ6IN97 320 aa12.64□□□□□ -0.39
LDLR-201ENST00000252444 TPRA1Q86W33 373 aa12.64□□□□□ -0.39
LDLR-201ENST00000252444 OR1N1Q8NGS0 311 aa12.64□□□□□ -0.39
LDLR-201ENST00000252444 OR4K3Q96R72 315 aa12.64□□□□□ -0.39
LDLR-201ENST00000252444 MICAL3Q7RTP6 2002 aa12.64□□□□□ -0.39
LDLR-201ENST00000252444 MKRN2OSH3BPM6 223 aa12.64□□□□□ -0.39
LDLR-201ENST00000252444 ERGP11308 486 aa12.64□□□□□ -0.39
LDLR-201ENST00000252444 UGT2B10P36537 528 aa12.64□□□□□ -0.39
LDLR-201ENST00000252444 GPR176Q14439 515 aa12.64□□□□□ -0.39
LDLR-201ENST00000252444 IHHQ14623 411 aa12.64□□□□□ -0.39
LDLR-201ENST00000252444 PLEKHN1Q494U1 663 aaPredicted RBP12.64□□□□□ -0.39
LDLR-201ENST00000252444 OGFOD3Q6PK18 319 aa12.64□□□□□ -0.39
LDLR-201ENST00000252444 SAP130Q9H0E3 1048 aa12.64□□□□□ -0.39
LDLR-201ENST00000252444 HDGFL3Q9Y3E1 203 aa12.64□□□□□ -0.39
LDLR-201ENST00000252444 A0A1W2PPW3 197 aa12.64□□□□□ -0.39
LDLR-201ENST00000252444 CLPXO76031 633 aa12.64□□□□□ -0.39
LDLR-201ENST00000252444 ATG12O94817 140 aa12.64□□□□□ -0.39
LDLR-201ENST00000252444 UCHL1P09936 223 aa12.64□□□□□ -0.39
LDLR-201ENST00000252444 ABOP16442 354 aa12.64□□□□□ -0.39
LDLR-201ENST00000252444 SELEP16581 610 aa12.64□□□□□ -0.39
LDLR-201ENST00000252444 RAB2AP61019 212 aa12.64□□□□□ -0.39
LDLR-201ENST00000252444 FAM111BQ6SJ93 734 aa12.64□□□□□ -0.39
LDLR-201ENST00000252444 FAM180AQ6UWF9 173 aa12.64□□□□□ -0.39
LDLR-201ENST00000252444 OR2L13Q8N349 312 aa12.64□□□□□ -0.39
LDLR-201ENST00000252444 SDF2Q99470 211 aa12.64□□□□□ -0.39
LDLR-201ENST00000252444 ALG12Q9BV10 488 aa12.64□□□□□ -0.39
LDLR-201ENST00000252444 MOB1AQ9H8S9 216 aa12.64□□□□□ -0.39
LDLR-201ENST00000252444 DHCR7Q9UBM7 475 aaKnown RBP12.64□□□□□ -0.39
LDLR-201ENST00000252444 ANKUB1A6NFN9 424 aa12.64□□□□□ -0.39
LDLR-201ENST00000252444 LRRN3E7EW58 273 aa12.64□□□□□ -0.39
LDLR-201ENST00000252444 ACOT8O14734 319 aa12.64□□□□□ -0.39
LDLR-201ENST00000252444 HPP00738 406 aa12.64□□□□□ -0.39
LDLR-201ENST00000252444 TCEA1P23193 301 aaKnown RBP12.64□□□□□ -0.39
LDLR-201ENST00000252444 ETV6P41212 452 aa12.64□□□□□ -0.39
LDLR-201ENST00000252444 PIN1Q13526 163 aaPredicted RBP12.64□□□□□ -0.39
LDLR-201ENST00000252444 OCLNQ16625 522 aa12.64□□□□□ -0.39
LDLR-201ENST00000252444 SLC36A2Q495M3 483 aa12.64□□□□□ -0.39
LDLR-201ENST00000252444 BORAQ6PGQ7 559 aa12.64□□□□□ -0.39
LDLR-201ENST00000252444 OVCH1Q7RTY7 1134 aa12.64□□□□□ -0.39
LDLR-201ENST00000252444 SLC35F3Q8IY50 421 aa12.64□□□□□ -0.39
LDLR-201ENST00000252444 BCORP1Q8N888 145 aa12.64□□□□□ -0.39
LDLR-201ENST00000252444 OR5AK2Q8NH90 309 aa12.64□□□□□ -0.39
LDLR-201ENST00000252444 PRDM7Q9NQW5 492 aa12.64□□□□□ -0.39
LDLR-201ENST00000252444 ABCB10Q9NRK6 738 aa12.64□□□□□ -0.39
LDLR-201ENST00000252444 SNTG1Q9NSN8 517 aa12.64□□□□□ -0.39
LDLR-201ENST00000252444 KLHL9Q9P2J3 617 aa12.64□□□□□ -0.39
LDLR-201ENST00000252444 ZNF646O15015 1829 aaPredicted RBP12.63□□□□□ -0.39
LDLR-201ENST00000252444 CD53P19397 219 aa12.63□□□□□ -0.39
LDLR-201ENST00000252444 CAMK2DQ13557 499 aa12.63□□□□□ -0.39
LDLR-201ENST00000252444 FCRL6Q6DN72 434 aa12.63□□□□□ -0.39
LDLR-201ENST00000252444 DNAJC22Q8N4W6 341 aa12.63□□□□□ -0.39
LDLR-201ENST00000252444 GPR148Q8TDV2 347 aa12.63□□□□□ -0.39
LDLR-201ENST00000252444 FAM46BQ96A09 425 aa12.63□□□□□ -0.39
LDLR-201ENST00000252444 MGLLQ99685 303 aa12.63□□□□□ -0.39
LDLR-201ENST00000252444 PITX2Q99697 317 aa12.63□□□□□ -0.39
LDLR-201ENST00000252444 FAM86C1Q9NVL1 165 aa12.63□□□□□ -0.39
LDLR-201ENST00000252444 TMPRSS11DO60235 418 aa12.63□□□□□ -0.39
LDLR-201ENST00000252444 STSP08842 583 aa12.63□□□□□ -0.39
LDLR-201ENST00000252444 OR2T7P0C7T2 308 aa12.63□□□□□ -0.39
LDLR-201ENST00000252444 CKMT1AP12532 417 aa12.63□□□□□ -0.39
LDLR-201ENST00000252444 TBXA2RP21731 343 aa12.63□□□□□ -0.39
LDLR-201ENST00000252444 TACR3P29371 465 aa12.63□□□□□ -0.39
LDLR-201ENST00000252444 GPR85P60893 370 aa12.63□□□□□ -0.39
LDLR-201ENST00000252444 CPEB4Q17RY0 729 aaKnown RBP eCLIP12.63□□□□□ -0.39
LDLR-201ENST00000252444 ZNF101Q8IZC7 436 aa12.63□□□□□ -0.39
LDLR-201ENST00000252444 OR2T27Q8NH04 317 aa12.63□□□□□ -0.39
LDLR-201ENST00000252444 C1orf198Q9H425 327 aa12.63□□□□□ -0.39
LDLR-201ENST00000252444 ZNF385DQ9H6B1 395 aa12.63□□□□□ -0.39
LDLR-201ENST00000252444 FAM227AF5H4B4 570 aa12.63□□□□□ -0.39
LDLR-201ENST00000252444 MRPL33O75394 65 aaKnown RBP12.63□□□□□ -0.39
LDLR-201ENST00000252444 MSL3P1P0C860 447 aa12.63□□□□□ -0.39
LDLR-201ENST00000252444 SLC3A1Q07837 685 aa12.63□□□□□ -0.39
LDLR-201ENST00000252444 CHCHD2P9Q5T1J5 151 aaPredicted RBP12.63□□□□□ -0.39
LDLR-201ENST00000252444 RPL22L1Q6P5R6 122 aaKnown RBP12.63□□□□□ -0.39
LDLR-201ENST00000252444 IL20RBQ6UXL0 311 aa12.63□□□□□ -0.39
LDLR-201ENST00000252444 FAM181AQ8N9Y4 354 aa12.63□□□□□ -0.39
LDLR-201ENST00000252444 OR13C3Q8NGS6 347 aa12.63□□□□□ -0.39
LDLR-201ENST00000252444 NUBPLQ8TB37 319 aa12.63□□□□□ -0.39
LDLR-201ENST00000252444 ZNF566Q969W8 418 aa12.63□□□□□ -0.39
LDLR-201ENST00000252444 TPD52L2O43399 206 aaKnown RBP12.63□□□□□ -0.39
LDLR-201ENST00000252444 TNFSF15O95150 251 aa12.63□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 85.1 ms