RNA–Protein interactions for RNA: ENST00000641603.1

SCN1A-220, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

BASIC

Gene SCN1A, Length 12,506 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-220ENST00000641603 KCNG3Q8TAE7 436 aa4.38□□□□□ -1.71
SCN1A-220ENST00000641603 ACER1Q8TDN7 264 aa4.38□□□□□ -1.71
SCN1A-220ENST00000641603 SLC6A7Q99884 636 aa4.38□□□□□ -1.71
SCN1A-220ENST00000641603 CMSS1Q9BQ75 279 aaKnown RBP4.38□□□□□ -1.71
SCN1A-220ENST00000641603 HRH4Q9H3N8 390 aa4.38□□□□□ -1.71
SCN1A-220ENST00000641603 PARPBPQ9NWS1 579 aa4.38□□□□□ -1.71
SCN1A-220ENST00000641603 TAS2R16Q9NYV7 291 aa4.38□□□□□ -1.71
SCN1A-220ENST00000641603 UBR1Q8IWV7 1749 aa4.38□□□□□ -1.71
SCN1A-220ENST00000641603 CST2P09228 141 aa4.38□□□□□ -1.71
SCN1A-220ENST00000641603 HOXA9P31269 272 aa4.38□□□□□ -1.71
SCN1A-220ENST00000641603 ZNF84P51523 738 aa4.38□□□□□ -1.71
SCN1A-220ENST00000641603 MPEG1Q2M385 716 aa4.38□□□□□ -1.71
SCN1A-220ENST00000641603 ZNF808Q8N4W9 903 aaPredicted RBP4.38□□□□□ -1.71
SCN1A-220ENST00000641603 TRAM1L1Q8N609 369 aa4.38□□□□□ -1.71
SCN1A-220ENST00000641603 LRRN4Q8WUT4 740 aa4.38□□□□□ -1.71
SCN1A-220ENST00000641603 COL26A1Q96A83 441 aa4.38□□□□□ -1.71
SCN1A-220ENST00000641603 SDHAF3Q9NRP4 125 aa4.38□□□□□ -1.71
SCN1A-220ENST00000641603 MUTYHQ9UIF7 546 aa4.38□□□□□ -1.71
SCN1A-220ENST00000641603 TMED3Q9Y3Q3 217 aa4.38□□□□□ -1.71
SCN1A-220ENST00000641603 LRP6O75581 1613 aa4.38□□□□□ -1.71
SCN1A-220ENST00000641603 ZNF541Q9H0D2 1346 aa4.38□□□□□ -1.71
SCN1A-220ENST00000641603 TBC1D3KA0A087X1G2 549 aa4.38□□□□□ -1.71
SCN1A-220ENST00000641603 TBC1D3BA6NDS4 549 aa4.38□□□□□ -1.71
SCN1A-220ENST00000641603 TBC1D3FA6NER0 549 aaPredicted RBP4.38□□□□□ -1.71
SCN1A-220ENST00000641603 PAPLNO95428 1278 aa4.38□□□□□ -1.71
SCN1A-220ENST00000641603 PTBP3O95758 552 aaKnown RBP4.38□□□□□ -1.71
SCN1A-220ENST00000641603 VEGFAP15692 232 aaPredicted RBP4.38□□□□□ -1.71
SCN1A-220ENST00000641603 ZNF791Q3KP31 576 aaPredicted RBP4.38□□□□□ -1.71
SCN1A-220ENST00000641603 TBC1D3GQ6DHY5 549 aa4.38□□□□□ -1.71
SCN1A-220ENST00000641603 CCDC116Q8IYX3 515 aa4.38□□□□□ -1.71
SCN1A-220ENST00000641603 ARRDC4Q8NCT1 418 aa4.38□□□□□ -1.71
SCN1A-220ENST00000641603 OR4C5Q8NGB2 326 aa4.38□□□□□ -1.71
SCN1A-220ENST00000641603 LKAAEAR1Q8TD35 194 aa4.38□□□□□ -1.71
SCN1A-220ENST00000641603 BPIFA2Q96DR5 249 aa4.38□□□□□ -1.71
SCN1A-220ENST00000641603 MSLNLQ96KJ4 702 aa4.38□□□□□ -1.71
SCN1A-220ENST00000641603 ZNF768Q9H5H4 540 aaKnown RBP4.38□□□□□ -1.71
SCN1A-220ENST00000641603 ADARB2Q9NS39 739 aaKnown RBP4.38□□□□□ -1.71
SCN1A-220ENST00000641603 PRODH2Q9UF12 536 aa4.38□□□□□ -1.71
SCN1A-220ENST00000641603 ASB1Q9Y576 335 aa4.38□□□□□ -1.71
SCN1A-220ENST00000641603 PIP5K1CO60331 668 aa4.38□□□□□ -1.71
SCN1A-220ENST00000641603 HCKP08631 526 aa4.38□□□□□ -1.71
SCN1A-220ENST00000641603 MTHFD2P13995 350 aa4.38□□□□□ -1.71
SCN1A-220ENST00000641603 AKR1C4P17516 323 aa4.38□□□□□ -1.71
SCN1A-220ENST00000641603 HSD11B1P28845 292 aa4.38□□□□□ -1.71
SCN1A-220ENST00000641603 ZNF133P52736 654 aaPredicted RBP4.38□□□□□ -1.71
SCN1A-220ENST00000641603 NAAAQ02083 359 aa4.38□□□□□ -1.71
SCN1A-220ENST00000641603 STEAP1BQ6NZ63 245 aa4.38□□□□□ -1.71
SCN1A-220ENST00000641603 ANKLE1Q8NAG6 615 aa4.38□□□□□ -1.71
SCN1A-220ENST00000641603 ZMIZ2Q8NF64 920 aa4.38□□□□□ -1.71
SCN1A-220ENST00000641603 LRRC3BQ96PB8 259 aa4.38□□□□□ -1.71
SCN1A-220ENST00000641603 PEBP4Q96S96 227 aa4.38□□□□□ -1.71
SCN1A-220ENST00000641603 TMEM121BQ9BXQ6 578 aaPredicted RBP4.38□□□□□ -1.71
SCN1A-220ENST00000641603 UTS2RQ9UKP6 389 aa4.38□□□□□ -1.71
SCN1A-220ENST00000641603 YTHDF2Q9Y5A9 579 aaKnown RBP4.38□□□□□ -1.71
SCN1A-220ENST00000641603 PCDHGA6Q9Y5G7 932 aa4.38□□□□□ -1.71
SCN1A-220ENST00000641603 TCRBV5S2A0A599 114 aa4.38□□□□□ -1.71
SCN1A-220ENST00000641603 ZAR1LA6NP61 321 aa4.38□□□□□ -1.71
SCN1A-220ENST00000641603 GSTZ1O43708 216 aaPredicted RBP4.38□□□□□ -1.71
SCN1A-220ENST00000641603 ABLIM3O94929 683 aa4.38□□□□□ -1.71
SCN1A-220ENST00000641603 GCGP01275 180 aa4.38□□□□□ -1.71
SCN1A-220ENST00000641603 ZNF44P15621 663 aa4.38□□□□□ -1.71
SCN1A-220ENST00000641603 CXADRP78310 365 aa4.38□□□□□ -1.71
SCN1A-220ENST00000641603 LTBQ06643 244 aa4.38□□□□□ -1.71
SCN1A-220ENST00000641603 ACSM1Q08AH1 577 aa4.38□□□□□ -1.71
SCN1A-220ENST00000641603 DBX2Q6ZNG2 339 aa4.38□□□□□ -1.71
SCN1A-220ENST00000641603 SLC35F2Q8IXU6 374 aa4.38□□□□□ -1.71
SCN1A-220ENST00000641603 GPC2Q8N158 579 aa4.38□□□□□ -1.71
SCN1A-220ENST00000641603 C9orf62Q8N4C0 152 aa4.38□□□□□ -1.71
SCN1A-220ENST00000641603 OR4K1Q8NGD4 311 aa4.38□□□□□ -1.71
SCN1A-220ENST00000641603 OR5AP2Q8NGF4 316 aa4.38□□□□□ -1.71
SCN1A-220ENST00000641603 MYADMQ96S97 322 aa4.38□□□□□ -1.71
SCN1A-220ENST00000641603 FAM83CQ9BQN1 747 aa4.38□□□□□ -1.71
SCN1A-220ENST00000641603 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP4.38□□□□□ -1.71
SCN1A-220ENST00000641603 KLK14Q9P0G3 267 aa4.38□□□□□ -1.71
SCN1A-220ENST00000641603 FBXO10Q9UK96 956 aa4.38□□□□□ -1.71
SCN1A-220ENST00000641603 KCNK7Q9Y2U2 307 aa4.38□□□□□ -1.71
SCN1A-220ENST00000641603 A0A087X0M5 115 aa4.38□□□□□ -1.71
SCN1A-220ENST00000641603 A0A1B0GX30 115 aa4.38□□□□□ -1.71
SCN1A-220ENST00000641603 C6orf47O95873 294 aa4.38□□□□□ -1.71
SCN1A-220ENST00000641603 OPN1MWP04001 364 aa4.38□□□□□ -1.71
SCN1A-220ENST00000641603 OPN1MW2P0DN77 364 aa4.38□□□□□ -1.71
SCN1A-220ENST00000641603 OPN1MW3P0DN78 364 aa4.38□□□□□ -1.71
SCN1A-220ENST00000641603 WASP42768 502 aa4.38□□□□□ -1.71
SCN1A-220ENST00000641603 BDKRB1P46663 353 aa4.38□□□□□ -1.71
SCN1A-220ENST00000641603 PDX1P52945 283 aa4.38□□□□□ -1.71
SCN1A-220ENST00000641603 MRPS6P82932 125 aaKnown RBP4.38□□□□□ -1.71
SCN1A-220ENST00000641603 CLEC9AQ6UXN8 241 aa4.38□□□□□ -1.71
SCN1A-220ENST00000641603 C6orf120Q7Z4R8 191 aa4.38□□□□□ -1.71
SCN1A-220ENST00000641603 LILRB2Q8N423 598 aa4.38□□□□□ -1.71
SCN1A-220ENST00000641603 ECHDC3Q96DC8 303 aa4.38□□□□□ -1.71
SCN1A-220ENST00000641603 TVP23CQ96ET8 276 aa4.38□□□□□ -1.71
SCN1A-220ENST00000641603 PDGFDQ9GZP0 370 aaPredicted RBP4.38□□□□□ -1.71
SCN1A-220ENST00000641603 IL26Q9NPH9 171 aa4.38□□□□□ -1.71
SCN1A-220ENST00000641603 SERINC1Q9NRX5 453 aa4.38□□□□□ -1.71
SCN1A-220ENST00000641603 METTL1Q9UBP6 276 aaKnown RBP4.38□□□□□ -1.71
SCN1A-220ENST00000641603 ARL5CA6NH57 179 aa4.38□□□□□ -1.71
SCN1A-220ENST00000641603 LOC730098B7Z3J9 87 aa4.38□□□□□ -1.71
SCN1A-220ENST00000641603 PPP1R11O60927 126 aaPredicted RBP4.38□□□□□ -1.71
SCN1A-220ENST00000641603 ALPIP09923 528 aa4.38□□□□□ -1.71
SCN1A-220ENST00000641603 CRABP1P29762 137 aa4.38□□□□□ -1.71
Retrieved 100 of 20,778 RNA–protein pairs in 28.4 ms