RNA–Protein interactions for RNA: ENST00000637551.2

CLN3-259, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,083 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-259ENST00000637551 OPRM1P35372 400 aa16.46■□□□□ 0.23
CLN3-259ENST00000637551 FOXF1Q12946 379 aa16.46■□□□□ 0.23
CLN3-259ENST00000637551 QPRTQ15274 297 aa16.46■□□□□ 0.23
CLN3-259ENST00000637551 FBXL19-AS1Q494R0 122 aa16.46■□□□□ 0.23
CLN3-259ENST00000637551 MRPL2Q5T653 305 aaKnown RBP16.46■□□□□ 0.23
CLN3-259ENST00000637551 INTS11Q5TA45 600 aaKnown RBP16.46■□□□□ 0.23
CLN3-259ENST00000637551 HACD2Q6Y1H2 254 aa16.46■□□□□ 0.23
CLN3-259ENST00000637551 SEM1Q6ZVN7 128 aa16.46■□□□□ 0.23
CLN3-259ENST00000637551 ZNF550Q7Z398 422 aa16.46■□□□□ 0.23
CLN3-259ENST00000637551 GRINAQ7Z429 371 aa16.46■□□□□ 0.23
CLN3-259ENST00000637551 RPRMLQ8N4K4 120 aa16.46■□□□□ 0.23
CLN3-259ENST00000637551 ANKS4BQ8N8V4 417 aa16.46■□□□□ 0.23
CLN3-259ENST00000637551 POC1BQ8TC44 478 aa16.46■□□□□ 0.23
CLN3-259ENST00000637551 LRRC58Q96CX6 371 aa16.46■□□□□ 0.23
CLN3-259ENST00000637551 MYLK2Q9H1R3 596 aa16.46■□□□□ 0.23
CLN3-259ENST00000637551 IKZF5Q9H5V7 419 aa16.46■□□□□ 0.23
CLN3-259ENST00000637551 GP6Q9HCN6 339 aa16.46■□□□□ 0.23
CLN3-259ENST00000637551 TIGARQ9NQ88 270 aa16.46■□□□□ 0.23
CLN3-259ENST00000637551 SERINC1Q9NRX5 453 aa16.46■□□□□ 0.23
CLN3-259ENST00000637551 GLRX2Q9NS18 164 aa16.46■□□□□ 0.23
CLN3-259ENST00000637551 ALKBH4Q9NXW9 302 aa16.46■□□□□ 0.23
CLN3-259ENST00000637551 FAM53CQ9NYF3 392 aa16.46■□□□□ 0.23
CLN3-259ENST00000637551 ZNF443Q9Y2A4 671 aaPredicted RBP16.46■□□□□ 0.23
CLN3-259ENST00000637551 OTOGQ6ZRI0 2925 aa16.46■□□□□ 0.23
CLN3-259ENST00000637551 A0A0G2JNJ9 132 aa16.45■□□□□ 0.22
CLN3-259ENST00000637551 CFAP73A6NFT4 308 aa16.45■□□□□ 0.22
CLN3-259ENST00000637551 FXYD1O00168 92 aa16.45■□□□□ 0.22
CLN3-259ENST00000637551 OIP5O43482 229 aa16.45■□□□□ 0.22
CLN3-259ENST00000637551 DNPH1O43598 174 aa16.45■□□□□ 0.22
CLN3-259ENST00000637551 PABPC4LP0CB38 370 aaKnown RBP16.45■□□□□ 0.22
CLN3-259ENST00000637551 CCR4P51679 360 aa16.45■□□□□ 0.22
CLN3-259ENST00000637551 SEC24CP53992 1094 aa16.45■□□□□ 0.22
CLN3-259ENST00000637551 PCBP3P57721 371 aaKnown RBP16.45■□□□□ 0.22
CLN3-259ENST00000637551 GNGT1P63211 74 aa16.45■□□□□ 0.22
CLN3-259ENST00000637551 PLAURQ03405 335 aa16.45■□□□□ 0.22
CLN3-259ENST00000637551 SCARB2Q14108 478 aa16.45■□□□□ 0.22
CLN3-259ENST00000637551 ADRM1Q16186 407 aa16.45■□□□□ 0.22
CLN3-259ENST00000637551 CTU2Q2VPK5 515 aaKnown RBP16.45■□□□□ 0.22
CLN3-259ENST00000637551 REP15Q6BDI9 236 aa16.45■□□□□ 0.22
CLN3-259ENST00000637551 ERICH5Q6P6B1 374 aa16.45■□□□□ 0.22
CLN3-259ENST00000637551 DHRS4L2Q6PKH6 230 aa16.45■□□□□ 0.22
CLN3-259ENST00000637551 SNX32Q86XE0 403 aa16.45■□□□□ 0.22
CLN3-259ENST00000637551 FBXO27Q8NI29 283 aa16.45■□□□□ 0.22
CLN3-259ENST00000637551 CPNE4Q96A23 557 aaPredicted RBP16.45■□□□□ 0.22
CLN3-259ENST00000637551 CMTM5Q96DZ9 223 aa16.45■□□□□ 0.22
CLN3-259ENST00000637551 LRRC46Q96FV0 321 aa16.45■□□□□ 0.22
CLN3-259ENST00000637551 KLHL15Q96M94 604 aa16.45■□□□□ 0.22
CLN3-259ENST00000637551 TRIB1Q96RU8 372 aa16.45■□□□□ 0.22
CLN3-259ENST00000637551 ELAC2Q9BQ52 826 aaKnown RBP16.45■□□□□ 0.22
CLN3-259ENST00000637551 THUMPD3Q9BV44 507 aaKnown RBP16.45■□□□□ 0.22
CLN3-259ENST00000637551 CCDC106Q9BWC9 280 aa16.45■□□□□ 0.22
CLN3-259ENST00000637551 Q9UFV3 132 aa16.45■□□□□ 0.22
CLN3-259ENST00000637551 ADGRG4Q8IZF6 3080 aa16.45■□□□□ 0.22
CLN3-259ENST00000637551 PKDREJQ9NTG1 2253 aa16.44■□□□□ 0.22
CLN3-259ENST00000637551 SLC22A20A6NK97 555 aa16.44■□□□□ 0.22
CLN3-259ENST00000637551 TOXO94900 526 aa16.44■□□□□ 0.22
CLN3-259ENST00000637551 CTSSP25774 331 aa16.44■□□□□ 0.22
CLN3-259ENST00000637551 SLC1A3P43003 542 aa16.44■□□□□ 0.22
CLN3-259ENST00000637551 STARP49675 285 aa16.44■□□□□ 0.22
CLN3-259ENST00000637551 CLDN15P56746 228 aa16.44■□□□□ 0.22
CLN3-259ENST00000637551 SESN3P58005 492 aa16.44■□□□□ 0.22
CLN3-259ENST00000637551 EPS8Q12929 822 aa16.44■□□□□ 0.22
CLN3-259ENST00000637551 VEZF1Q14119 521 aa16.44■□□□□ 0.22
CLN3-259ENST00000637551 CYP51A1Q16850 503 aa16.44■□□□□ 0.22
CLN3-259ENST00000637551 FAM91A1Q658Y4 838 aa16.44■□□□□ 0.22
CLN3-259ENST00000637551 NANOGP8Q6NSW7 305 aa16.44■□□□□ 0.22
CLN3-259ENST00000637551 PIGWQ7Z7B1 504 aa16.44■□□□□ 0.22
CLN3-259ENST00000637551 PATL1Q86TB9 770 aaKnown RBP16.44■□□□□ 0.22
CLN3-259ENST00000637551 LILRA2Q8N149 483 aa16.44■□□□□ 0.22
CLN3-259ENST00000637551 OR10Q1Q8NGQ4 319 aa16.44■□□□□ 0.22
CLN3-259ENST00000637551 OR2V1Q8NHB1 315 aa16.44■□□□□ 0.22
CLN3-259ENST00000637551 RASSF5Q8WWW0 418 aa16.44■□□□□ 0.22
CLN3-259ENST00000637551 QRSL1Q9H0R6 528 aaKnown RBP16.44■□□□□ 0.22
CLN3-259ENST00000637551 PIGMQ9H3S5 423 aa16.44■□□□□ 0.22
CLN3-259ENST00000637551 NANOGQ9H9S0 305 aa16.44■□□□□ 0.22
CLN3-259ENST00000637551 RNF122Q9H9V4 155 aa16.44■□□□□ 0.22
CLN3-259ENST00000637551 KCNJ16Q9NPI9 418 aa16.44■□□□□ 0.22
CLN3-259ENST00000637551 MCTS1Q9ULC4 181 aaKnown RBP16.44■□□□□ 0.22
CLN3-259ENST00000637551 HCFC1P51610 2035 aa16.44■□□□□ 0.22
CLN3-259ENST00000637551 ZNF208O43345 1280 aa16.43■□□□□ 0.22
CLN3-259ENST00000637551 DCTN3O75935 186 aa16.43■□□□□ 0.22
CLN3-259ENST00000637551 C8BP07358 591 aa16.43■□□□□ 0.22
CLN3-259ENST00000637551 NUDT7P0C024 238 aa16.43■□□□□ 0.22
CLN3-259ENST00000637551 CD1EP15812 388 aa16.43■□□□□ 0.22
CLN3-259ENST00000637551 HTR1EP28566 365 aa16.43■□□□□ 0.22
CLN3-259ENST00000637551 PCGF2P35227 344 aa16.43■□□□□ 0.22
CLN3-259ENST00000637551 SUCLG1P53597 346 aaKnown RBP16.43■□□□□ 0.22
CLN3-259ENST00000637551 CLDN20P56880 219 aa16.43■□□□□ 0.22
CLN3-259ENST00000637551 ZNF311Q5JNZ3 666 aa16.43■□□□□ 0.22
CLN3-259ENST00000637551 GTF2IRD2BQ6EKJ0 949 aa16.43■□□□□ 0.22
CLN3-259ENST00000637551 ZNF836Q6ZNA1 936 aa16.43■□□□□ 0.22
CLN3-259ENST00000637551 PLEKHM3Q6ZWE6 761 aa16.43■□□□□ 0.22
CLN3-259ENST00000637551 MTDHQ86UE4 582 aaKnown RBP16.43■□□□□ 0.22
CLN3-259ENST00000637551 GTF2IRD2Q86UP8 949 aa16.43■□□□□ 0.22
CLN3-259ENST00000637551 PTOV1Q86YD1 416 aa16.43■□□□□ 0.22
CLN3-259ENST00000637551 CNOT9Q92600 299 aaKnown RBP16.43■□□□□ 0.22
CLN3-259ENST00000637551 MAL2Q969L2 176 aa16.43■□□□□ 0.22
CLN3-259ENST00000637551 REXO5Q96IC2 774 aaKnown RBP16.43■□□□□ 0.22
CLN3-259ENST00000637551 HOPXQ9BPY8 73 aaPredicted RBP16.43■□□□□ 0.22
CLN3-259ENST00000637551 SPOCK3Q9BQ16 436 aa16.43■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 35.3 ms