RNA–Protein interactions for RNA: ENST00000636228.1

CLN3-246, Transcript of CLN3, battenin, humanhuman

TSL 1 (best) BASIC

Gene CLN3, Length 1,224 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-246ENST00000636228 RAC3P60763 192 aa14.3□□□□□ -0.12
CLN3-246ENST00000636228 SELENBP1Q13228 472 aa14.3□□□□□ -0.12
CLN3-246ENST00000636228 CBFBQ13951 182 aa14.3□□□□□ -0.12
CLN3-246ENST00000636228 P2RY6Q15077 328 aa14.3□□□□□ -0.12
CLN3-246ENST00000636228 SLC25A53Q5H9E4 307 aa14.3□□□□□ -0.12
CLN3-246ENST00000636228 C6orf120Q7Z4R8 191 aa14.3□□□□□ -0.12
CLN3-246ENST00000636228 RIMKLAQ8IXN7 391 aa14.3□□□□□ -0.12
CLN3-246ENST00000636228 CLECL1Q8IZS7 167 aa14.3□□□□□ -0.12
CLN3-246ENST00000636228 SLC43A2Q8N370 569 aa14.3□□□□□ -0.12
CLN3-246ENST00000636228 ZNF75CPQ92670 426 aaPredicted RBP14.3□□□□□ -0.12
CLN3-246ENST00000636228 TUBGCP3Q96CW5 907 aa14.3□□□□□ -0.12
CLN3-246ENST00000636228 PPP1R36Q96LQ0 422 aa14.3□□□□□ -0.12
CLN3-246ENST00000636228 POTEKPQ9BYX7 375 aa14.3□□□□□ -0.12
CLN3-246ENST00000636228 TRIM2Q9C040 744 aa14.3□□□□□ -0.12
CLN3-246ENST00000636228 SLCO5A1Q9H2Y9 848 aa14.3□□□□□ -0.12
CLN3-246ENST00000636228 BCO1Q9HAY6 547 aa14.3□□□□□ -0.12
CLN3-246ENST00000636228 GP6Q9HCN6 339 aa14.3□□□□□ -0.12
CLN3-246ENST00000636228 MKS1Q9NXB0 559 aa14.3□□□□□ -0.12
CLN3-246ENST00000636228 KLHL9Q9P2J3 617 aa14.3□□□□□ -0.12
CLN3-246ENST00000636228 MKLN1Q9UL63 735 aa14.3□□□□□ -0.12
CLN3-246ENST00000636228 PRR14LQ5THK1 2151 aa14.29□□□□□ -0.12
CLN3-246ENST00000636228 HIVEP2P31629 2446 aa14.29□□□□□ -0.12
CLN3-246ENST00000636228 CYTIPO60759 359 aa14.29□□□□□ -0.12
CLN3-246ENST00000636228 ADAM11O75078 769 aa14.29□□□□□ -0.12
CLN3-246ENST00000636228 IGHV3-9P01782 118 aa14.29□□□□□ -0.12
CLN3-246ENST00000636228 IGHV4-39P01824 125 aa14.29□□□□□ -0.12
CLN3-246ENST00000636228 PRPS1L1P21108 318 aa14.29□□□□□ -0.12
CLN3-246ENST00000636228 IGHV1-2P23083 117 aa14.29□□□□□ -0.12
CLN3-246ENST00000636228 OR4F3Q6IEY1 312 aa14.29□□□□□ -0.12
CLN3-246ENST00000636228 Q6ZT83 130 aa14.29□□□□□ -0.12
CLN3-246ENST00000636228 HMGN2P46Q86SG4 172 aa14.29□□□□□ -0.12
CLN3-246ENST00000636228 EIF1ADQ8N9N8 165 aaKnown RBP14.29□□□□□ -0.12
CLN3-246ENST00000636228 SFXN5Q8TD22 340 aa14.29□□□□□ -0.12
CLN3-246ENST00000636228 PRPF18Q99633 342 aaKnown RBP14.29□□□□□ -0.12
CLN3-246ENST00000636228 BHLHE41Q9C0J9 482 aaPredicted RBP14.29□□□□□ -0.12
CLN3-246ENST00000636228 CISD1Q9NZ45 108 aaKnown RBP14.29□□□□□ -0.12
CLN3-246ENST00000636228 NPAP1Q9NZP6 1156 aa14.29□□□□□ -0.12
CLN3-246ENST00000636228 BCAS1O75363 584 aaPredicted RBP14.28□□□□□ -0.12
CLN3-246ENST00000636228 UGT2B17O75795 530 aa14.28□□□□□ -0.12
CLN3-246ENST00000636228 CSTAP01040 98 aa14.28□□□□□ -0.12
CLN3-246ENST00000636228 FESP07332 822 aa14.28□□□□□ -0.12
CLN3-246ENST00000636228 UBTFL6P0CB48 400 aaPredicted RBP14.28□□□□□ -0.12
CLN3-246ENST00000636228 SESN3P58005 492 aa14.28□□□□□ -0.12
CLN3-246ENST00000636228 DMTNQ08495 405 aa14.28□□□□□ -0.12
CLN3-246ENST00000636228 MERTKQ12866 999 aa14.28□□□□□ -0.12
CLN3-246ENST00000636228 SKP2Q13309 424 aa14.28□□□□□ -0.12
CLN3-246ENST00000636228 PPA1Q15181 289 aa14.28□□□□□ -0.12
CLN3-246ENST00000636228 MAPK14Q16539 360 aa14.28□□□□□ -0.12
CLN3-246ENST00000636228 C3orf33Q6P1S2 294 aa14.28□□□□□ -0.12
CLN3-246ENST00000636228 CXXC5Q7LFL8 322 aaKnown RBP14.28□□□□□ -0.12
CLN3-246ENST00000636228 ZNF100Q8IYN0 542 aa14.28□□□□□ -0.12
CLN3-246ENST00000636228 NATD1Q8N6N6 113 aa14.28□□□□□ -0.12
CLN3-246ENST00000636228 LAT2Q9GZY6 243 aa14.28□□□□□ -0.12
CLN3-246ENST00000636228 TLN2Q9Y4G6 2542 aa14.28□□□□□ -0.12
CLN3-246ENST00000636228 FBN1P35555 2871 aaKnown RBP14.27□□□□□ -0.12
CLN3-246ENST00000636228 RNF103-CHMP3A0A140T963 221 aa14.27□□□□□ -0.13
CLN3-246ENST00000636228 A0A1W2PR80 420 aa14.27□□□□□ -0.13
CLN3-246ENST00000636228 SHISA9B4DS77 424 aa14.27□□□□□ -0.13
CLN3-246ENST00000636228 SULT2B1O00204 365 aa14.27□□□□□ -0.13
CLN3-246ENST00000636228 ETV2O00321 342 aaPredicted RBP14.27□□□□□ -0.13
CLN3-246ENST00000636228 DIO1P49895 249 aa14.27□□□□□ -0.13
CLN3-246ENST00000636228 ZNF141Q15928 474 aa14.27□□□□□ -0.13
CLN3-246ENST00000636228 HEPHL1Q6MZM0 1159 aa14.27□□□□□ -0.13
CLN3-246ENST00000636228 TMPPEQ6ZT21 453 aa14.27□□□□□ -0.13
CLN3-246ENST00000636228 OR4A15Q8NGL6 344 aa14.27□□□□□ -0.13
CLN3-246ENST00000636228 MOAP1Q96BY2 351 aa14.27□□□□□ -0.13
CLN3-246ENST00000636228 MUCL1Q96DR8 90 aa14.27□□□□□ -0.13
CLN3-246ENST00000636228 TRAF4Q9BUZ4 470 aaPredicted RBP14.27□□□□□ -0.13
CLN3-246ENST00000636228 NMUR2Q9GZQ4 415 aa14.27□□□□□ -0.13
CLN3-246ENST00000636228 OR51I1Q9H343 314 aa14.27□□□□□ -0.13
CLN3-246ENST00000636228 SERINC1Q9NRX5 453 aa14.27□□□□□ -0.13
CLN3-246ENST00000636228 ABCD4O14678 606 aa14.26□□□□□ -0.13
CLN3-246ENST00000636228 ITM2AO43736 263 aa14.26□□□□□ -0.13
CLN3-246ENST00000636228 SSX4O60224 188 aa14.26□□□□□ -0.13
CLN3-246ENST00000636228 STX11O75558 287 aa14.26□□□□□ -0.13
CLN3-246ENST00000636228 C1QCP02747 245 aa14.26□□□□□ -0.13
CLN3-246ENST00000636228 BPGMP07738 259 aa14.26□□□□□ -0.13
CLN3-246ENST00000636228 OR12D1P0DN82 309 aa14.26□□□□□ -0.13
CLN3-246ENST00000636228 TFPIP10646 304 aa14.26□□□□□ -0.13
CLN3-246ENST00000636228 GGT1P19440 569 aa14.26□□□□□ -0.13
CLN3-246ENST00000636228 CCNA2P20248 432 aa14.26□□□□□ -0.13
CLN3-246ENST00000636228 RYKP34925 604 aa14.26□□□□□ -0.13
CLN3-246ENST00000636228 CDH11P55287 796 aa14.26□□□□□ -0.13
CLN3-246ENST00000636228 CLDN8P56748 225 aa14.26□□□□□ -0.13
CLN3-246ENST00000636228 ARHGAP11BQ3KRB8 267 aa14.26□□□□□ -0.13
CLN3-246ENST00000636228 C16orf62Q7Z3J2 963 aa14.26□□□□□ -0.13
CLN3-246ENST00000636228 GALNT5Q7Z7M9 940 aa14.26□□□□□ -0.13
CLN3-246ENST00000636228 ANKRD46Q86W74 232 aa14.26□□□□□ -0.13
CLN3-246ENST00000636228 UBE2J2Q8N2K1 259 aa14.26□□□□□ -0.13
CLN3-246ENST00000636228 HTRA1Q92743 480 aa14.26□□□□□ -0.13
CLN3-246ENST00000636228 RAB8BQ92930 207 aa14.26□□□□□ -0.13
CLN3-246ENST00000636228 ARL8AQ96BM9 186 aa14.26□□□□□ -0.13
CLN3-246ENST00000636228 ZG16BQ96DA0 208 aa14.26□□□□□ -0.13
CLN3-246ENST00000636228 PKNOX2Q96KN3 472 aa14.26□□□□□ -0.13
CLN3-246ENST00000636228 SLC35G5Q96KT7 338 aa14.26□□□□□ -0.13
CLN3-246ENST00000636228 HS6ST2Q96MM7 605 aa14.26□□□□□ -0.13
CLN3-246ENST00000636228 ALG2Q9H553 416 aa14.26□□□□□ -0.13
CLN3-246ENST00000636228 L2HGDHQ9H9P8 463 aa14.26□□□□□ -0.13
CLN3-246ENST00000636228 CTPS2Q9NRF8 586 aa14.26□□□□□ -0.13
CLN3-246ENST00000636228 YAE1D1Q9NRH1 226 aa14.26□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 26.5 ms