RNA–Protein interactions for RNA: ENST00000631023.2

CLN3-240, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,586 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-240ENST00000631023 DNAJB12Q9NXW2 375 aaKnown RBP18.64■□□□□ 0.57
CLN3-240ENST00000631023 ARMCX1Q9P291 453 aa18.64■□□□□ 0.57
CLN3-240ENST00000631023 PRDM4Q9UKN5 801 aa18.64■□□□□ 0.57
CLN3-240ENST00000631023 ZNF443Q9Y2A4 671 aaPredicted RBP18.64■□□□□ 0.57
CLN3-240ENST00000631023 ZNF175Q9Y473 711 aa18.64■□□□□ 0.57
CLN3-240ENST00000631023 CDHR4A6H8M9 788 aa18.63■□□□□ 0.57
CLN3-240ENST00000631023 MRASO14807 208 aa18.63■□□□□ 0.57
CLN3-240ENST00000631023 ADAMDEC1O15204 470 aa18.63■□□□□ 0.57
CLN3-240ENST00000631023 BCAS1O75363 584 aaPredicted RBP18.63■□□□□ 0.57
CLN3-240ENST00000631023 OPN1LWP04000 364 aa18.63■□□□□ 0.57
CLN3-240ENST00000631023 TMIGD3P0DMS9 266 aaPredicted RBP18.63■□□□□ 0.57
CLN3-240ENST00000631023 DRD4P21917 467 aa18.63■□□□□ 0.57
CLN3-240ENST00000631023 COL8A1P27658 744 aa18.63■□□□□ 0.57
CLN3-240ENST00000631023 OPRM1P35372 400 aa18.63■□□□□ 0.57
CLN3-240ENST00000631023 EIF1AXP47813 144 aaKnown RBP18.63■□□□□ 0.57
CLN3-240ENST00000631023 EEF1A1P68104 462 aaKnown RBP18.63■□□□□ 0.57
CLN3-240ENST00000631023 RBBP4Q09028 425 aa18.63■□□□□ 0.57
CLN3-240ENST00000631023 SELENBP1Q13228 472 aa18.63■□□□□ 0.57
CLN3-240ENST00000631023 SCARB2Q14108 478 aa18.63■□□□□ 0.57
CLN3-240ENST00000631023 CYP51A1Q16850 503 aa18.63■□□□□ 0.57
CLN3-240ENST00000631023 ZNF311Q5JNZ3 666 aa18.63■□□□□ 0.57
CLN3-240ENST00000631023 EEF1A1P5Q5VTE0 462 aa18.63■□□□□ 0.57
CLN3-240ENST00000631023 CRYBG3Q68DQ2 2970 aa18.63■□□□□ 0.57
CLN3-240ENST00000631023 OR2A2Q6IF42 318 aa18.63■□□□□ 0.57
CLN3-240ENST00000631023 C10orf111Q8N326 155 aa18.63■□□□□ 0.57
CLN3-240ENST00000631023 NAXEQ8NCW5 288 aa18.63■□□□□ 0.57
CLN3-240ENST00000631023 RP9Q8TA86 221 aaKnown RBP18.63■□□□□ 0.57
CLN3-240ENST00000631023 LRRC58Q96CX6 371 aa18.63■□□□□ 0.57
CLN3-240ENST00000631023 KLHL15Q96M94 604 aa18.63■□□□□ 0.57
CLN3-240ENST00000631023 SPATA5L1Q9BVQ7 753 aa18.63■□□□□ 0.57
CLN3-240ENST00000631023 UCK2Q9BZX2 261 aa18.63■□□□□ 0.57
CLN3-240ENST00000631023 TIGARQ9NQ88 270 aa18.63■□□□□ 0.57
CLN3-240ENST00000631023 GID8Q9NWU2 228 aa18.63■□□□□ 0.57
CLN3-240ENST00000631023 CFAP73A6NFT4 308 aa18.62■□□□□ 0.57
CLN3-240ENST00000631023 SNX3O60493 162 aa18.62■□□□□ 0.57
CLN3-240ENST00000631023 TGM6O95932 706 aa18.62■□□□□ 0.57
CLN3-240ENST00000631023 IL18BPO95998 194 aa18.62■□□□□ 0.57
CLN3-240ENST00000631023 PABPC4LP0CB38 370 aaKnown RBP18.62■□□□□ 0.57
CLN3-240ENST00000631023 IL11P20809 199 aa18.62■□□□□ 0.57
CLN3-240ENST00000631023 BMP5P22003 454 aa18.62■□□□□ 0.57
CLN3-240ENST00000631023 SFTPDP35247 375 aa18.62■□□□□ 0.57
CLN3-240ENST00000631023 ZNF136P52737 540 aa18.62■□□□□ 0.57
CLN3-240ENST00000631023 MTPNP58546 118 aa18.62■□□□□ 0.57
CLN3-240ENST00000631023 MERTKQ12866 999 aa18.62■□□□□ 0.57
CLN3-240ENST00000631023 CAPRIN1Q14444 709 aaKnown RBP18.62■□□□□ 0.57
CLN3-240ENST00000631023 RNF220Q5VTB9 566 aa18.62■□□□□ 0.57
CLN3-240ENST00000631023 REP15Q6BDI9 236 aa18.62■□□□□ 0.57
CLN3-240ENST00000631023 NANOGP8Q6NSW7 305 aa18.62■□□□□ 0.57
CLN3-240ENST00000631023 ZNF836Q6ZNA1 936 aa18.62■□□□□ 0.57
CLN3-240ENST00000631023 MTDHQ86UE4 582 aaKnown RBP18.62■□□□□ 0.57
CLN3-240ENST00000631023 LIX1LQ8IVB5 337 aa18.62■□□□□ 0.57
CLN3-240ENST00000631023 C11orf65Q8NCR3 313 aa18.62■□□□□ 0.57
CLN3-240ENST00000631023 OR10D3Q8NH80 312 aa18.62■□□□□ 0.57
CLN3-240ENST00000631023 OR2V1Q8NHB1 315 aa18.62■□□□□ 0.57
CLN3-240ENST00000631023 ZNF524Q96C55 264 aa18.62■□□□□ 0.57
CLN3-240ENST00000631023 ZNF607Q96SK3 696 aa18.62■□□□□ 0.57
CLN3-240ENST00000631023 SPATA9Q9BWV2 254 aa18.62■□□□□ 0.57
CLN3-240ENST00000631023 PRRG4Q9BZD6 226 aa18.62■□□□□ 0.57
CLN3-240ENST00000631023 NANOGQ9H9S0 305 aa18.62■□□□□ 0.57
CLN3-240ENST00000631023 RLIMQ9NVW2 624 aa18.62■□□□□ 0.57
CLN3-240ENST00000631023 NKX2-6A6NCS4 301 aa18.61■□□□□ 0.57
CLN3-240ENST00000631023 FAAHO00519 579 aa18.61■□□□□ 0.57
CLN3-240ENST00000631023 TNFSF11O14788 317 aa18.61■□□□□ 0.57
CLN3-240ENST00000631023 EFNA2O43921 213 aa18.61■□□□□ 0.57
CLN3-240ENST00000631023 FCGR2AP12318 317 aa18.61■□□□□ 0.57
CLN3-240ENST00000631023 GRNP28799 593 aaKnown RBP18.61■□□□□ 0.57
CLN3-240ENST00000631023 APOBEC1P41238 236 aaKnown RBP18.61■□□□□ 0.57
CLN3-240ENST00000631023 HTR3AP46098 478 aa18.61■□□□□ 0.57
CLN3-240ENST00000631023 IDH2P48735 452 aaKnown RBP18.61■□□□□ 0.57
CLN3-240ENST00000631023 CARD18P57730 90 aa18.61■□□□□ 0.57
CLN3-240ENST00000631023 PON3Q15166 354 aa18.61■□□□□ 0.57
CLN3-240ENST00000631023 ADRM1Q16186 407 aa18.61■□□□□ 0.57
CLN3-240ENST00000631023 TMEM176BQ3YBM2 270 aaPredicted RBP18.61■□□□□ 0.57
CLN3-240ENST00000631023 HBMQ6B0K9 141 aa18.61■□□□□ 0.57
CLN3-240ENST00000631023 C3orf33Q6P1S2 294 aa18.61■□□□□ 0.57
CLN3-240ENST00000631023 ZNF550Q7Z398 422 aa18.61■□□□□ 0.57
CLN3-240ENST00000631023 GRINAQ7Z429 371 aa18.61■□□□□ 0.57
CLN3-240ENST00000631023 SERPINA11Q86U17 422 aa18.61■□□□□ 0.57
CLN3-240ENST00000631023 HIPK4Q8NE63 616 aa18.61■□□□□ 0.57
CLN3-240ENST00000631023 ATP6V1C2Q8NEY4 427 aa18.61■□□□□ 0.57
CLN3-240ENST00000631023 INTS12Q96CB8 462 aaKnown RBP18.61■□□□□ 0.57
CLN3-240ENST00000631023 LRRC46Q96FV0 321 aa18.61■□□□□ 0.57
CLN3-240ENST00000631023 ZNF845Q96IR2 970 aaPredicted RBP18.61■□□□□ 0.57
CLN3-240ENST00000631023 KAT8Q9H7Z6 458 aaKnown RBP18.61■□□□□ 0.57
CLN3-240ENST00000631023 MCTS1Q9ULC4 181 aaKnown RBP18.61■□□□□ 0.57
CLN3-240ENST00000631023 ANGPT4Q9Y264 503 aa18.61■□□□□ 0.57
CLN3-240ENST00000631023 SPIN1Q9Y657 262 aaPredicted RBP18.61■□□□□ 0.57
CLN3-240ENST00000631023 A0A0J9YW62 118 aa18.6■□□□□ 0.57
CLN3-240ENST00000631023 SERPINB7O75635 380 aa18.6■□□□□ 0.57
CLN3-240ENST00000631023 SYNGR4O95473 234 aa18.6■□□□□ 0.57
CLN3-240ENST00000631023 CRHP06850 196 aa18.6■□□□□ 0.57
CLN3-240ENST00000631023 SLC7A1P30825 629 aa18.6■□□□□ 0.57
CLN3-240ENST00000631023 DLX5P56178 289 aa18.6■□□□□ 0.57
CLN3-240ENST00000631023 PLAURQ03405 335 aa18.6■□□□□ 0.57
CLN3-240ENST00000631023 CTU2Q2VPK5 515 aaKnown RBP18.6■□□□□ 0.57
CLN3-240ENST00000631023 HIST2H2BCQ6DN03 193 aa18.6■□□□□ 0.57
CLN3-240ENST00000631023 PLXDC2Q6UX71 529 aa18.6■□□□□ 0.57
CLN3-240ENST00000631023 PLEKHM3Q6ZWE6 761 aa18.6■□□□□ 0.57
CLN3-240ENST00000631023 SLC30A8Q8IWU4 369 aa18.6■□□□□ 0.57
CLN3-240ENST00000631023 OR8J3Q8NGG0 315 aa18.6■□□□□ 0.57
Retrieved 100 of 20,778 RNA–protein pairs in 27.2 ms