RNA–Protein interactions for RNA: ENST00000620676.4

VPS13D-214, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene VPS13D, Length 16,320 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-214ENST00000620676 DLEU7Q6UYE1 221 aa4.73□□□□□ -1.65
VPS13D-214ENST00000620676 GLYATL2Q8WU03 294 aa4.73□□□□□ -1.65
VPS13D-214ENST00000620676 FN3KQ9H479 309 aa4.73□□□□□ -1.65
VPS13D-214ENST00000620676 SLC2A9Q9NRM0 540 aa4.73□□□□□ -1.65
VPS13D-214ENST00000620676 NPIPA1Q9UND3 350 aa4.73□□□□□ -1.65
VPS13D-214ENST00000620676 SPATA31A5Q5VU36 1347 aa4.73□□□□□ -1.65
VPS13D-214ENST00000620676 SPATA31A7Q8IWB4 1347 aa4.73□□□□□ -1.65
VPS13D-214ENST00000620676 A0A1B0GTL3 188 aa4.73□□□□□ -1.65
VPS13D-214ENST00000620676 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP4.73□□□□□ -1.65
VPS13D-214ENST00000620676 CRTAPO75718 401 aaPredicted RBP4.73□□□□□ -1.65
VPS13D-214ENST00000620676 AKAIN1P0CW23 69 aa4.73□□□□□ -1.65
VPS13D-214ENST00000620676 PLEKHN1Q494U1 663 aaPredicted RBP4.73□□□□□ -1.65
VPS13D-214ENST00000620676 SEC61A2Q9H9S3 476 aa4.73□□□□□ -1.65
VPS13D-214ENST00000620676 DHCR7Q9UBM7 475 aaKnown RBP4.73□□□□□ -1.65
VPS13D-214ENST00000620676 ZNF727A8MUV8 499 aa4.73□□□□□ -1.65
VPS13D-214ENST00000620676 ZNF587BE7ETH6 402 aa4.73□□□□□ -1.65
VPS13D-214ENST00000620676 PEX12O00623 359 aa4.73□□□□□ -1.65
VPS13D-214ENST00000620676 NDUFS4O43181 175 aa4.73□□□□□ -1.65
VPS13D-214ENST00000620676 SLC16A8O95907 504 aa4.73□□□□□ -1.65
VPS13D-214ENST00000620676 TPT1P13693 172 aaKnown RBP4.73□□□□□ -1.65
VPS13D-214ENST00000620676 TMEM132BQ14DG7 1078 aa4.73□□□□□ -1.65
VPS13D-214ENST00000620676 ACER2Q5QJU3 275 aa4.73□□□□□ -1.65
VPS13D-214ENST00000620676 ADGRG3Q86Y34 549 aa4.73□□□□□ -1.65
VPS13D-214ENST00000620676 MED18Q9BUE0 208 aa4.73□□□□□ -1.65
VPS13D-214ENST00000620676 SERTAD4Q9NUC0 356 aa4.73□□□□□ -1.65
VPS13D-214ENST00000620676 NTNG1Q9Y2I2 539 aa4.73□□□□□ -1.65
VPS13D-214ENST00000620676 OR5H14A6NHG9 310 aa4.73□□□□□ -1.65
VPS13D-214ENST00000620676 GLI4P10075 376 aa4.73□□□□□ -1.65
VPS13D-214ENST00000620676 ATRAIDQ6UW56 229 aa4.73□□□□□ -1.65
VPS13D-214ENST00000620676 AGMOQ6ZNB7 445 aa4.73□□□□□ -1.65
VPS13D-214ENST00000620676 DEFB128Q7Z7B8 93 aa4.73□□□□□ -1.65
VPS13D-214ENST00000620676 TMEM150AQ86TG1 271 aa4.73□□□□□ -1.65
VPS13D-214ENST00000620676 HUS1BQ8NHY5 278 aa4.73□□□□□ -1.65
VPS13D-214ENST00000620676 AUNIPQ9H7T9 357 aa4.73□□□□□ -1.65
VPS13D-214ENST00000620676 PATZ1Q9HBE1 687 aaKnown RBP4.73□□□□□ -1.65
VPS13D-214ENST00000620676 GKN1Q9NS71 199 aa4.73□□□□□ -1.65
VPS13D-214ENST00000620676 MEGF6O75095 1541 aa4.72□□□□□ -1.65
VPS13D-214ENST00000620676 NPIPA5A0A0B4J1W7 369 aa4.72□□□□□ -1.65
VPS13D-214ENST00000620676 LGALS2P05162 132 aa4.72□□□□□ -1.65
VPS13D-214ENST00000620676 SPI1P17947 270 aa4.72□□□□□ -1.65
VPS13D-214ENST00000620676 CLDN6P56747 220 aa4.72□□□□□ -1.65
VPS13D-214ENST00000620676 SMAD3P84022 425 aaKnown RBP4.72□□□□□ -1.65
VPS13D-214ENST00000620676 TNK1Q13470 666 aa4.72□□□□□ -1.65
VPS13D-214ENST00000620676 COX18Q8N8Q8 333 aa4.72□□□□□ -1.65
VPS13D-214ENST00000620676 LMLNQ96KR4 655 aa4.72□□□□□ -1.65
VPS13D-214ENST00000620676 CNN2Q99439 309 aaKnown RBP4.72□□□□□ -1.65
VPS13D-214ENST00000620676 C2orf42Q9NWW7 574 aa4.72□□□□□ -1.65
VPS13D-214ENST00000620676 KIF20BQ96Q89 1820 aa4.72□□□□□ -1.65
VPS13D-214ENST00000620676 OTOL1A6NHN0 477 aaPredicted RBP4.72□□□□□ -1.65
VPS13D-214ENST00000620676 GATCO43716 136 aaKnown RBP4.72□□□□□ -1.65
VPS13D-214ENST00000620676 ZNF823P16415 610 aa4.72□□□□□ -1.65
VPS13D-214ENST00000620676 ZNF8P17098 575 aaPredicted RBP4.72□□□□□ -1.65
VPS13D-214ENST00000620676 RAB11AP62491 216 aa4.72□□□□□ -1.65
VPS13D-214ENST00000620676 IRF3Q14653 427 aa4.72□□□□□ -1.65
VPS13D-214ENST00000620676 KCNAB1Q14722 419 aa4.72□□□□□ -1.65
VPS13D-214ENST00000620676 CBX2Q14781 532 aaPredicted RBP4.72□□□□□ -1.65
VPS13D-214ENST00000620676 BAIAP2L2Q6UXY1 529 aa4.72□□□□□ -1.65
VPS13D-214ENST00000620676 Q6ZTK2 550 aa4.72□□□□□ -1.65
VPS13D-214ENST00000620676 SH2D5Q6ZV89 423 aa4.72□□□□□ -1.65
VPS13D-214ENST00000620676 CMTM4Q8IZR5 234 aa4.72□□□□□ -1.65
VPS13D-214ENST00000620676 ADIPOR1Q96A54 375 aa4.72□□□□□ -1.65
VPS13D-214ENST00000620676 EGLN2Q96KS0 407 aa4.72□□□□□ -1.65
VPS13D-214ENST00000620676 XRN2Q9H0D6 950 aaKnown RBP eCLIP4.72□□□□□ -1.65
VPS13D-214ENST00000620676 CALML5Q9NZT1 146 aa4.72□□□□□ -1.65
VPS13D-214ENST00000620676 RUVBL1Q9Y265 456 aaKnown RBP4.72□□□□□ -1.65
VPS13D-214ENST00000620676 COQ4Q9Y3A0 265 aa4.72□□□□□ -1.65
VPS13D-214ENST00000620676 CHST2Q9Y4C5 530 aa4.72□□□□□ -1.65
VPS13D-214ENST00000620676 NID2Q14112 1375 aa4.72□□□□□ -1.65
VPS13D-214ENST00000620676 A0A0A6YYC8 382 aaPredicted RBP4.72□□□□□ -1.65
VPS13D-214ENST00000620676 I3L1I5 382 aaPredicted RBP4.72□□□□□ -1.65
VPS13D-214ENST00000620676 PDHXO00330 501 aa4.72□□□□□ -1.65
VPS13D-214ENST00000620676 GABRA5P31644 462 aa4.72□□□□□ -1.65
VPS13D-214ENST00000620676 TESK1Q15569 626 aa4.72□□□□□ -1.65
VPS13D-214ENST00000620676 MLIPQ5VWP3 458 aa4.72□□□□□ -1.65
VPS13D-214ENST00000620676 SFXN4Q6P4A7 337 aa4.72□□□□□ -1.65
VPS13D-214ENST00000620676 CHRDL2Q6WN34 429 aa4.72□□□□□ -1.65
VPS13D-214ENST00000620676 TRAPPC6BQ86SZ2 158 aa4.72□□□□□ -1.65
VPS13D-214ENST00000620676 SUMF1Q8NBK3 374 aa4.72□□□□□ -1.65
VPS13D-214ENST00000620676 GHSRQ92847 366 aa4.72□□□□□ -1.65
VPS13D-214ENST00000620676 L3HYPDHQ96EM0 354 aa4.72□□□□□ -1.65
VPS13D-214ENST00000620676 DOK1Q99704 481 aa4.72□□□□□ -1.65
VPS13D-214ENST00000620676 ADAM2Q99965 735 aa4.72□□□□□ -1.65
VPS13D-214ENST00000620676 ASGR1P07306 291 aa4.72□□□□□ -1.65
VPS13D-214ENST00000620676 CDK2P24941 298 aa4.72□□□□□ -1.65
VPS13D-214ENST00000620676 CCKBRP32239 447 aa4.72□□□□□ -1.65
VPS13D-214ENST00000620676 ZNF534Q76KX8 674 aa4.72□□□□□ -1.65
VPS13D-214ENST00000620676 LHFPL5Q8TAF8 219 aa4.72□□□□□ -1.65
VPS13D-214ENST00000620676 OR11A1Q9GZK7 315 aa4.72□□□□□ -1.65
VPS13D-214ENST00000620676 FBXO44Q9H4M3 255 aa4.72□□□□□ -1.65
VPS13D-214ENST00000620676 FBXL12Q9NXK8 326 aa4.72□□□□□ -1.65
VPS13D-214ENST00000620676 SH3BGRL2Q9UJC5 107 aa4.72□□□□□ -1.65
VPS13D-214ENST00000620676 FBXL4Q9UKA2 621 aa4.72□□□□□ -1.65
VPS13D-214ENST00000620676 ONECUT3O60422 494 aaPredicted RBP4.72□□□□□ -1.65
VPS13D-214ENST00000620676 EGFRP00533 1210 aa4.72□□□□□ -1.65
VPS13D-214ENST00000620676 RHOQP17081 205 aa4.72□□□□□ -1.65
VPS13D-214ENST00000620676 MVDP53602 400 aa4.72□□□□□ -1.65
VPS13D-214ENST00000620676 HTD2P86397 168 aa4.72□□□□□ -1.65
VPS13D-214ENST00000620676 CD276Q5ZPR3 534 aa4.72□□□□□ -1.65
VPS13D-214ENST00000620676 SMARCD2Q92925 531 aa4.72□□□□□ -1.65
VPS13D-214ENST00000620676 UROC1Q96N76 676 aa4.72□□□□□ -1.65
Retrieved 100 of 20,778 RNA–protein pairs in 65.9 ms