RNA–Protein interactions for RNA: ENST00000616974.1

LINC00540-202, long intergenic non-protein coding RNA 540, humanhuman

TSL 1 (best)

Gene LINC00540, Length 2,143 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00540-202ENST00000616974 LILRA2Q8N149 483 aa12.13□□□□□ -0.47
LINC00540-202ENST00000616974 FAM156AQ8NDB6 213 aa12.13□□□□□ -0.47
LINC00540-202ENST00000616974 FNDC9Q8TBE3 224 aa12.13□□□□□ -0.47
LINC00540-202ENST00000616974 TAMM41Q96BW9 452 aa12.13□□□□□ -0.47
LINC00540-202ENST00000616974 SDCCAG3Q96C92 435 aa12.13□□□□□ -0.47
LINC00540-202ENST00000616974 ADGRG7Q96K78 797 aa12.13□□□□□ -0.47
LINC00540-202ENST00000616974 PINK1Q9BXM7 581 aa12.13□□□□□ -0.47
LINC00540-202ENST00000616974 SRXN1Q9BYN0 137 aa12.13□□□□□ -0.47
LINC00540-202ENST00000616974 BCL2L10Q9HD36 194 aa12.13□□□□□ -0.47
LINC00540-202ENST00000616974 CTPS2Q9NRF8 586 aa12.13□□□□□ -0.47
LINC00540-202ENST00000616974 MRPS18CQ9Y3D5 142 aaKnown RBP12.13□□□□□ -0.47
LINC00540-202ENST00000616974 PDZD2O15018 2839 aa12.13□□□□□ -0.47
LINC00540-202ENST00000616974 A0A0G2JPF8 293 aa12.13□□□□□ -0.47
LINC00540-202ENST00000616974 A0A1B0GUH1 482 aa12.13□□□□□ -0.47
LINC00540-202ENST00000616974 ZC3H12DA2A288 527 aaKnown RBP12.13□□□□□ -0.47
LINC00540-202ENST00000616974 BBIP1A8MTZ0 92 aa12.13□□□□□ -0.47
LINC00540-202ENST00000616974 HNRNPCL2B2RXH8 293 aa12.13□□□□□ -0.47
LINC00540-202ENST00000616974 HNRNPCL3B7ZW38 293 aa12.13□□□□□ -0.47
LINC00540-202ENST00000616974 H0Y3Z8 333 aa12.13□□□□□ -0.47
LINC00540-202ENST00000616974 H3BNH8 94 aa12.13□□□□□ -0.47
LINC00540-202ENST00000616974 M0QX08 132 aa12.13□□□□□ -0.47
LINC00540-202ENST00000616974 HNRNPCL1O60812 293 aaKnown RBP12.13□□□□□ -0.47
LINC00540-202ENST00000616974 AQP8O94778 261 aa12.13□□□□□ -0.47
LINC00540-202ENST00000616974 SOX30O94993 753 aa12.13□□□□□ -0.47
LINC00540-202ENST00000616974 DBIP07108 87 aaKnown RBP12.13□□□□□ -0.47
LINC00540-202ENST00000616974 HNRNPCL4P0DMR1 293 aa12.13□□□□□ -0.47
LINC00540-202ENST00000616974 CPN1P15169 458 aa12.13□□□□□ -0.47
LINC00540-202ENST00000616974 CHMP24386 653 aa12.13□□□□□ -0.47
LINC00540-202ENST00000616974 BNIP2Q12982 314 aa12.13□□□□□ -0.47
LINC00540-202ENST00000616974 COQ5Q5HYK3 327 aa12.13□□□□□ -0.47
LINC00540-202ENST00000616974 MISPQ8IVT2 679 aa12.13□□□□□ -0.47
LINC00540-202ENST00000616974 ARL5BQ96KC2 179 aa12.13□□□□□ -0.47
LINC00540-202ENST00000616974 PIGQQ9BRB3 760 aa12.13□□□□□ -0.47
LINC00540-202ENST00000616974 COQ10BQ9H8M1 238 aa12.13□□□□□ -0.47
LINC00540-202ENST00000616974 TNFSF12-TNFSF13A0A0A6YY99 330 aa12.12□□□□□ -0.47
LINC00540-202ENST00000616974 IGHV3-15A0A0B4J1V0 119 aa12.12□□□□□ -0.47
LINC00540-202ENST00000616974 FIGNL2A6NMB9 653 aa12.12□□□□□ -0.47
LINC00540-202ENST00000616974 C5orf58C9J3I9 102 aa12.12□□□□□ -0.47
LINC00540-202ENST00000616974 M0R3H8 397 aa12.12□□□□□ -0.47
LINC00540-202ENST00000616974 EIF4E2O60573 245 aaKnown RBP12.12□□□□□ -0.47
LINC00540-202ENST00000616974 MFN2O95140 757 aa12.12□□□□□ -0.47
LINC00540-202ENST00000616974 ACTL6AO96019 429 aa12.12□□□□□ -0.47
LINC00540-202ENST00000616974 GUSBP08236 651 aa12.12□□□□□ -0.47
LINC00540-202ENST00000616974 HTR2AP28223 471 aa12.12□□□□□ -0.47
LINC00540-202ENST00000616974 ADSLP30566 484 aaPredicted RBP12.12□□□□□ -0.47
LINC00540-202ENST00000616974 ANXA11P50995 505 aaKnown RBP12.12□□□□□ -0.47
LINC00540-202ENST00000616974 ZNF136P52737 540 aa12.12□□□□□ -0.47
LINC00540-202ENST00000616974 SLC25A3Q00325 362 aa12.12□□□□□ -0.47
LINC00540-202ENST00000616974 CBFBQ13951 182 aa12.12□□□□□ -0.47
LINC00540-202ENST00000616974 PPP4R4Q6NUP7 873 aa12.12□□□□□ -0.47
LINC00540-202ENST00000616974 AAGABQ6PD74 315 aa12.12□□□□□ -0.47
LINC00540-202ENST00000616974 ST6GALNAC1Q9NSC7 600 aaPredicted RBP12.12□□□□□ -0.47
LINC00540-202ENST00000616974 CLCF1Q9UBD9 225 aa12.12□□□□□ -0.47
LINC00540-202ENST00000616974 SUCOQ9UBS9 1254 aaKnown RBP12.12□□□□□ -0.47
LINC00540-202ENST00000616974 CLEC4AQ9UMR7 237 aa12.12□□□□□ -0.47
LINC00540-202ENST00000616974 SLC22A2O15244 555 aa12.11□□□□□ -0.47
LINC00540-202ENST00000616974 CXCL13O43927 109 aa12.11□□□□□ -0.47
LINC00540-202ENST00000616974 PPIBP23284 216 aaKnown RBP12.11□□□□□ -0.47
LINC00540-202ENST00000616974 MSX1P28360 303 aa12.11□□□□□ -0.47
LINC00540-202ENST00000616974 EIF1AXP47813 144 aaKnown RBP12.11□□□□□ -0.47
LINC00540-202ENST00000616974 CASP6P55212 293 aa12.11□□□□□ -0.47
LINC00540-202ENST00000616974 MERTKQ12866 999 aa12.11□□□□□ -0.47
LINC00540-202ENST00000616974 EPS8Q12929 822 aa12.11□□□□□ -0.47
LINC00540-202ENST00000616974 PON3Q15166 354 aa12.11□□□□□ -0.47
LINC00540-202ENST00000616974 MAPRE2Q15555 327 aa12.11□□□□□ -0.47
LINC00540-202ENST00000616974 VMACQ2NL98 169 aa12.11□□□□□ -0.47
LINC00540-202ENST00000616974 TMEM176BQ3YBM2 270 aaPredicted RBP12.11□□□□□ -0.47
LINC00540-202ENST00000616974 P3H2Q8IVL5 708 aa12.11□□□□□ -0.47
LINC00540-202ENST00000616974 TOR1AIP2Q8NFQ8 470 aa12.11□□□□□ -0.47
LINC00540-202ENST00000616974 BBS10Q8TAM1 723 aa12.11□□□□□ -0.47
LINC00540-202ENST00000616974 LRRC37BQ96QE4 947 aa12.11□□□□□ -0.47
LINC00540-202ENST00000616974 RAD21L1Q9H4I0 556 aa12.11□□□□□ -0.47
LINC00540-202ENST00000616974 SLC35A3Q9Y2D2 325 aa12.11□□□□□ -0.47
LINC00540-202ENST00000616974 ANKRD17O75179 2603 aaKnown RBP12.11□□□□□ -0.47
LINC00540-202ENST00000616974 FAM90A27PA6NNH2 459 aa12.11□□□□□ -0.47
LINC00540-202ENST00000616974 ETV2O00321 342 aaPredicted RBP12.11□□□□□ -0.47
LINC00540-202ENST00000616974 WDR1O75083 606 aa12.11□□□□□ -0.47
LINC00540-202ENST00000616974 T-ENOLP0DO92 83 aa12.11□□□□□ -0.47
LINC00540-202ENST00000616974 NCK1P16333 377 aa12.11□□□□□ -0.47
LINC00540-202ENST00000616974 NPTX1Q15818 432 aa12.11□□□□□ -0.47
LINC00540-202ENST00000616974 ZNF800Q2TB10 664 aaPredicted RBP eCLIP12.11□□□□□ -0.47
LINC00540-202ENST00000616974 LIN52Q52LA3 116 aa12.11□□□□□ -0.47
LINC00540-202ENST00000616974 ENPP6Q6UWR7 440 aa12.11□□□□□ -0.47
LINC00540-202ENST00000616974 PLEKHM3Q6ZWE6 761 aa12.11□□□□□ -0.47
LINC00540-202ENST00000616974 ADGRG3Q86Y34 549 aa12.11□□□□□ -0.47
LINC00540-202ENST00000616974 CADM2Q8N3J6 435 aa12.11□□□□□ -0.47
LINC00540-202ENST00000616974 C11orf65Q8NCR3 313 aa12.11□□□□□ -0.47
LINC00540-202ENST00000616974 RBM15BQ8NDT2 890 aaKnown RBP12.11□□□□□ -0.47
LINC00540-202ENST00000616974 HIPK4Q8NE63 616 aa12.11□□□□□ -0.47
LINC00540-202ENST00000616974 OR8J3Q8NGG0 315 aa12.11□□□□□ -0.47
LINC00540-202ENST00000616974 OR10D3Q8NH80 312 aa12.11□□□□□ -0.47
LINC00540-202ENST00000616974 ZNF563Q8TA94 476 aa12.11□□□□□ -0.47
LINC00540-202ENST00000616974 ROBO4Q8WZ75 1007 aa12.11□□□□□ -0.47
LINC00540-202ENST00000616974 ZBTB8AQ96BR9 441 aa12.11□□□□□ -0.47
LINC00540-202ENST00000616974 INTS12Q96CB8 462 aaKnown RBP12.11□□□□□ -0.47
LINC00540-202ENST00000616974 ECSITQ9BQ95 431 aa12.11□□□□□ -0.47
LINC00540-202ENST00000616974 ZNF814B7Z6K7 855 aa12.1□□□□□ -0.47
LINC00540-202ENST00000616974 CD247P20963 164 aa12.1□□□□□ -0.47
LINC00540-202ENST00000616974 LIPEQ05469 1076 aa12.1□□□□□ -0.47
LINC00540-202ENST00000616974 RNF220Q5VTB9 566 aa12.1□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 51.1 ms