RNA–Protein interactions for RNA: ENST00000613444.4

USP39-220, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 2 BASIC

Gene USP39, Length 2,161 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-220ENST00000613444 CNIH4Q9P003 139 aa13.01□□□□□ -0.33
USP39-220ENST00000613444 A0A087WUJ7 227 aa13□□□□□ -0.33
USP39-220ENST00000613444 WISP1O95388 367 aa13□□□□□ -0.33
USP39-220ENST00000613444 IFNGR2P38484 337 aa13□□□□□ -0.33
USP39-220ENST00000613444 RBM34P42696 430 aaKnown RBP13□□□□□ -0.33
USP39-220ENST00000613444 CHN2P52757 468 aa13□□□□□ -0.33
USP39-220ENST00000613444 COPZ1P61923 177 aa13□□□□□ -0.33
USP39-220ENST00000613444 ESRRGP62508 458 aa13□□□□□ -0.33
USP39-220ENST00000613444 PRKCDQ05655 676 aa13□□□□□ -0.33
USP39-220ENST00000613444 C17orf67Q0P5P2 114 aa13□□□□□ -0.33
USP39-220ENST00000613444 TSPAN31Q12999 210 aa13□□□□□ -0.33
USP39-220ENST00000613444 IL18R1Q13478 541 aa13□□□□□ -0.33
USP39-220ENST00000613444 ATG4DQ86TL0 474 aaPredicted RBP13□□□□□ -0.33
USP39-220ENST00000613444 KIF18BQ86Y91 864 aa13□□□□□ -0.33
USP39-220ENST00000613444 B4GALNT2Q8NHY0 566 aa13□□□□□ -0.33
USP39-220ENST00000613444 GNPDA2Q8TDQ7 276 aa13□□□□□ -0.33
USP39-220ENST00000613444 GPR119Q8TDV5 335 aa13□□□□□ -0.33
USP39-220ENST00000613444 FBLIM1Q8WUP2 373 aa13□□□□□ -0.33
USP39-220ENST00000613444 ASB15Q8WXK1 588 aa13□□□□□ -0.33
USP39-220ENST00000613444 IGLV3-32A0A0A0MS00 114 aa13□□□□□ -0.33
USP39-220ENST00000613444 TRABD2BA6NFA1 517 aa13□□□□□ -0.33
USP39-220ENST00000613444 CDC42EP2O14613 210 aa13□□□□□ -0.33
USP39-220ENST00000613444 GMFGO60234 142 aa13□□□□□ -0.33
USP39-220ENST00000613444 LYNP07948 512 aa13□□□□□ -0.33
USP39-220ENST00000613444 FPR3P25089 353 aa13□□□□□ -0.33
USP39-220ENST00000613444 SLC1A3P43003 542 aa13□□□□□ -0.33
USP39-220ENST00000613444 CRISP1P54107 249 aa13□□□□□ -0.33
USP39-220ENST00000613444 CTBP2P56545 445 aa13□□□□□ -0.33
USP39-220ENST00000613444 ALDH6A1Q02252 535 aaKnown RBP13□□□□□ -0.33
USP39-220ENST00000613444 PTGES3Q15185 160 aaKnown RBP13□□□□□ -0.33
USP39-220ENST00000613444 COL28A1Q2UY09 1125 aa13□□□□□ -0.33
USP39-220ENST00000613444 ACER2Q5QJU3 275 aa13□□□□□ -0.33
USP39-220ENST00000613444 ATP1A1-AS1Q5TC04 95 aa13□□□□□ -0.33
USP39-220ENST00000613444 OR5M10Q6IEU7 315 aa13□□□□□ -0.33
USP39-220ENST00000613444 ISLR2Q6UXK2 745 aa13□□□□□ -0.33
USP39-220ENST00000613444 RRM2BQ7LG56 351 aa13□□□□□ -0.33
USP39-220ENST00000613444 DND1Q8IYX4 353 aaKnown RBP13□□□□□ -0.33
USP39-220ENST00000613444 THOC3Q96J01 351 aaKnown RBP13□□□□□ -0.33
USP39-220ENST00000613444 HS6ST2Q96MM7 605 aa13□□□□□ -0.33
USP39-220ENST00000613444 FRMD6Q96NE9 622 aa13□□□□□ -0.33
USP39-220ENST00000613444 SECISBP2Q96T21 854 aaKnown RBP13□□□□□ -0.33
USP39-220ENST00000613444 PROK2Q9HC23 129 aa13□□□□□ -0.33
USP39-220ENST00000613444 ATP13A2Q9NQ11 1180 aa13□□□□□ -0.33
USP39-220ENST00000613444 RPS6KB2Q9UBS0 482 aa13□□□□□ -0.33
USP39-220ENST00000613444 IGKV1D-42A0A075B6H8 117 aa12.99□□□□□ -0.33
USP39-220ENST00000613444 ZAR1LA6NP61 321 aa12.99□□□□□ -0.33
USP39-220ENST00000613444 SOX14O95416 240 aa12.99□□□□□ -0.33
USP39-220ENST00000613444 WT1P19544 449 aaPredicted RBP12.99□□□□□ -0.33
USP39-220ENST00000613444 MAKP20794 623 aa12.99□□□□□ -0.33
USP39-220ENST00000613444 GPR4P46093 362 aa12.99□□□□□ -0.33
USP39-220ENST00000613444 CBFBQ13951 182 aa12.99□□□□□ -0.33
USP39-220ENST00000613444 LAIR2Q6ISS4 152 aa12.99□□□□□ -0.33
USP39-220ENST00000613444 KRT80Q6KB66 452 aa12.99□□□□□ -0.33
USP39-220ENST00000613444 JMJD6Q6NYC1 403 aaPredicted RBP12.99□□□□□ -0.33
USP39-220ENST00000613444 THAP5Q7Z6K1 395 aa12.99□□□□□ -0.33
USP39-220ENST00000613444 C8orf59Q8N0T1 100 aaPredicted RBP12.99□□□□□ -0.33
USP39-220ENST00000613444 RNF217Q8TC41 542 aa12.99□□□□□ -0.33
USP39-220ENST00000613444 PAQR8Q8TEZ7 354 aa12.99□□□□□ -0.33
USP39-220ENST00000613444 DSN1Q9H410 356 aa12.99□□□□□ -0.33
USP39-220ENST00000613444 PNPLA3Q9NST1 481 aa12.99□□□□□ -0.33
USP39-220ENST00000613444 KLRF1Q9NZS2 232 aa12.99□□□□□ -0.33
USP39-220ENST00000613444 ENOPH1Q9UHY7 261 aa12.99□□□□□ -0.33
USP39-220ENST00000613444 KLK13Q9UKR3 277 aa12.99□□□□□ -0.33
USP39-220ENST00000613444 GMPPBQ9Y5P6 360 aa12.99□□□□□ -0.33
USP39-220ENST00000613444 WIF1Q9Y5W5 379 aa12.99□□□□□ -0.33
USP39-220ENST00000613444 TP53I11O14683 189 aa12.98□□□□□ -0.33
USP39-220ENST00000613444 GSTM3P21266 225 aa12.98□□□□□ -0.33
USP39-220ENST00000613444 ITPKBP27987 946 aa12.98□□□□□ -0.33
USP39-220ENST00000613444 GGT2P36268 569 aa12.98□□□□□ -0.33
USP39-220ENST00000613444 CD47Q08722 323 aa12.98□□□□□ -0.33
USP39-220ENST00000613444 SNTA1Q13424 505 aa12.98□□□□□ -0.33
USP39-220ENST00000613444 CTU2Q2VPK5 515 aaKnown RBP12.98□□□□□ -0.33
USP39-220ENST00000613444 TMPRSS11FQ6ZWK6 438 aa12.98□□□□□ -0.33
USP39-220ENST00000613444 P3H2Q8IVL5 708 aa12.98□□□□□ -0.33
USP39-220ENST00000613444 UBE2FQ969M7 185 aa12.98□□□□□ -0.33
USP39-220ENST00000613444 CCNL2Q96S94 520 aaPredicted RBP12.98□□□□□ -0.33
USP39-220ENST00000613444 METTL7AQ9H8H3 244 aa12.98□□□□□ -0.33
USP39-220ENST00000613444 C12orf10Q9HB07 376 aa12.98□□□□□ -0.33
USP39-220ENST00000613444 CPNE5Q9HCH3 593 aa12.98□□□□□ -0.33
USP39-220ENST00000613444 WASF3Q9UPY6 502 aa12.98□□□□□ -0.33
USP39-220ENST00000613444 MED31Q9Y3C7 131 aa12.98□□□□□ -0.33
USP39-220ENST00000613444 ANKUB1A6NFN9 424 aa12.98□□□□□ -0.33
USP39-220ENST00000613444 KPNA4O00629 521 aaPredicted RBP12.98□□□□□ -0.33
USP39-220ENST00000613444 CCL3P10147 92 aa12.98□□□□□ -0.33
USP39-220ENST00000613444 PGCP20142 388 aa12.98□□□□□ -0.33
USP39-220ENST00000613444 RPS6KA3P51812 740 aa12.98□□□□□ -0.33
USP39-220ENST00000613444 AIMP2Q13155 320 aaKnown RBP12.98□□□□□ -0.33
USP39-220ENST00000613444 CLN3Q13286 438 aa12.98□□□□□ -0.33
USP39-220ENST00000613444 QPRTQ15274 297 aa12.98□□□□□ -0.33
USP39-220ENST00000613444 INPP5JQ15735 1006 aaPredicted RBP12.98□□□□□ -0.33
USP39-220ENST00000613444 TBC1D25Q3MII6 688 aa12.98□□□□□ -0.33
USP39-220ENST00000613444 TMEM236Q5W0B7 351 aa12.98□□□□□ -0.33
USP39-220ENST00000613444 RASSF6Q6ZTQ3 369 aa12.98□□□□□ -0.33
USP39-220ENST00000613444 ZNF227Q86WZ6 799 aa12.98□□□□□ -0.33
USP39-220ENST00000613444 TMEM156Q8N614 296 aa12.98□□□□□ -0.33
USP39-220ENST00000613444 ZNF563Q8TA94 476 aa12.98□□□□□ -0.33
USP39-220ENST00000613444 PLA2G12AQ9BZM1 189 aa12.98□□□□□ -0.33
USP39-220ENST00000613444 MED11Q9P086 117 aa12.98□□□□□ -0.33
USP39-220ENST00000613444 EIF4E1BA6NMX2 242 aaKnown RBP12.97□□□□□ -0.33
USP39-220ENST00000613444 GNB5O14775 395 aa12.97□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 21.5 ms