RNA–Protein interactions for RNA: ENST00000600310.5

UPF1-209, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 4

Gene UPF1, Length 750 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-209ENST00000600310 ELK4P28324 431 aa17.46■□□□□ 0.39
UPF1-209ENST00000600310 CLDN18P56856 261 aa17.46■□□□□ 0.39
UPF1-209ENST00000600310 CBX1P83916 185 aa17.46■□□□□ 0.39
UPF1-209ENST00000600310 ESPL1Q14674 2120 aa17.46■□□□□ 0.39
UPF1-209ENST00000600310 C1QL3Q5VWW1 255 aa17.46■□□□□ 0.39
UPF1-209ENST00000600310 C6orf89Q6UWU4 347 aa17.46■□□□□ 0.39
UPF1-209ENST00000600310 PLEKHM3Q6ZWE6 761 aa17.46■□□□□ 0.39
UPF1-209ENST00000600310 GRINAQ7Z429 371 aa17.46■□□□□ 0.39
UPF1-209ENST00000600310 RNF148Q8N7C7 305 aa17.46■□□□□ 0.39
UPF1-209ENST00000600310 TP63Q9H3D4 680 aaPredicted RBP17.46■□□□□ 0.39
UPF1-209ENST00000600310 TAS2R1Q9NYW7 299 aa17.46■□□□□ 0.39
UPF1-209ENST00000600310 STOML1Q9UBI4 398 aa17.46■□□□□ 0.39
UPF1-209ENST00000600310 PACSIN3Q9UKS6 424 aa17.46■□□□□ 0.39
UPF1-209ENST00000600310 FIGNL2A6NMB9 653 aa17.45■□□□□ 0.38
UPF1-209ENST00000600310 H3BML4 177 aa17.45■□□□□ 0.38
UPF1-209ENST00000600310 GSTA4O15217 222 aa17.45■□□□□ 0.38
UPF1-209ENST00000600310 FRS3O43559 492 aa17.45■□□□□ 0.38
UPF1-209ENST00000600310 EFNA2O43921 213 aa17.45■□□□□ 0.38
UPF1-209ENST00000600310 WDR1O75083 606 aa17.45■□□□□ 0.38
UPF1-209ENST00000600310 HOXD4P09016 255 aaPredicted RBP17.45■□□□□ 0.38
UPF1-209ENST00000600310 GABRA1P14867 456 aa17.45■□□□□ 0.38
UPF1-209ENST00000600310 GGT1P19440 569 aa17.45■□□□□ 0.38
UPF1-209ENST00000600310 PTGER4P35408 488 aa17.45■□□□□ 0.38
UPF1-209ENST00000600310 RAC1P63000 192 aa17.45■□□□□ 0.38
UPF1-209ENST00000600310 BNIP1Q12981 228 aa17.45■□□□□ 0.38
UPF1-209ENST00000600310 FXNQ16595 210 aa17.45■□□□□ 0.38
UPF1-209ENST00000600310 C4orf17Q53FE4 359 aa17.45■□□□□ 0.38
UPF1-209ENST00000600310 ZNF585AQ6P3V2 769 aa17.45■□□□□ 0.38
UPF1-209ENST00000600310 ARHGAP24Q8N264 748 aa17.45■□□□□ 0.38
UPF1-209ENST00000600310 FIG4Q92562 907 aa17.45■□□□□ 0.38
UPF1-209ENST00000600310 SH3BGRL2Q9UJC5 107 aa17.45■□□□□ 0.38
UPF1-209ENST00000600310 CAMK2AQ9UQM7 478 aa17.45■□□□□ 0.38
UPF1-209ENST00000600310 MYO18BQ8IUG5 2567 aa17.44■□□□□ 0.38
UPF1-209ENST00000600310 HEATR5AQ86XA9 2040 aa17.44■□□□□ 0.38
UPF1-209ENST00000600310 FESP07332 822 aa17.44■□□□□ 0.38
UPF1-209ENST00000600310 IL11P20809 199 aa17.44■□□□□ 0.38
UPF1-209ENST00000600310 HTR3AP46098 478 aa17.44■□□□□ 0.38
UPF1-209ENST00000600310 ZNF136P52737 540 aa17.44■□□□□ 0.38
UPF1-209ENST00000600310 COPZ1P61923 177 aa17.44■□□□□ 0.38
UPF1-209ENST00000600310 MERTKQ12866 999 aa17.44■□□□□ 0.38
UPF1-209ENST00000600310 NRF1Q16656 503 aa17.44■□□□□ 0.38
UPF1-209ENST00000600310 LRRC23Q53EV4 343 aaPredicted RBP17.44■□□□□ 0.38
UPF1-209ENST00000600310 CYBRD1Q53TN4 286 aa17.44■□□□□ 0.38
UPF1-209ENST00000600310 WBP2NLQ6ICG8 309 aa17.44■□□□□ 0.38
UPF1-209ENST00000600310 ULK2Q8IYT8 1036 aa17.44■□□□□ 0.38
UPF1-209ENST00000600310 EID3Q8N140 333 aa17.44■□□□□ 0.38
UPF1-209ENST00000600310 ARHGDIGQ99819 225 aa17.44■□□□□ 0.38
UPF1-209ENST00000600310 ADAM19Q9H013 955 aa17.44■□□□□ 0.38
UPF1-209ENST00000600310 ALKBH4Q9NXW9 302 aa17.44■□□□□ 0.38
UPF1-209ENST00000600310 BAG5Q9UL15 447 aa17.44■□□□□ 0.38
UPF1-209ENST00000600310 GTF3C1Q12789 2109 aa17.44■□□□□ 0.38
UPF1-209ENST00000600310 TMEM229AB2RXF0 380 aa17.43■□□□□ 0.38
UPF1-209ENST00000600310 E9PLN8 166 aa17.43■□□□□ 0.38
UPF1-209ENST00000600310 CCL21O00585 134 aa17.43■□□□□ 0.38
UPF1-209ENST00000600310 TCN1P20061 433 aaPredicted RBP17.43■□□□□ 0.38
UPF1-209ENST00000600310 ACVR2AP27037 513 aa17.43■□□□□ 0.38
UPF1-209ENST00000600310 APOBEC1P41238 236 aaKnown RBP17.43■□□□□ 0.38
UPF1-209ENST00000600310 SLC1A3P43003 542 aa17.43■□□□□ 0.38
UPF1-209ENST00000600310 SUCLG1P53597 346 aaKnown RBP17.43■□□□□ 0.38
UPF1-209ENST00000600310 CLDN15P56746 228 aa17.43■□□□□ 0.38
UPF1-209ENST00000600310 CLDN20P56880 219 aa17.43■□□□□ 0.38
UPF1-209ENST00000600310 RGS8P57771 180 aaPredicted RBP17.43■□□□□ 0.38
UPF1-209ENST00000600310 HOXC5Q00444 222 aa17.43■□□□□ 0.38
UPF1-209ENST00000600310 KCNC4Q03721 635 aa17.43■□□□□ 0.38
UPF1-209ENST00000600310 SRYQ05066 204 aa17.43■□□□□ 0.38
UPF1-209ENST00000600310 SELENBP1Q13228 472 aa17.43■□□□□ 0.38
UPF1-209ENST00000600310 CEACAM7Q14002 265 aa17.43■□□□□ 0.38
UPF1-209ENST00000600310 SF3B4Q15427 424 aaKnown RBP eCLIP17.43■□□□□ 0.383e-7■■□□□ 14
UPF1-209ENST00000600310 GLYATQ6IB77 296 aa17.43■□□□□ 0.38
UPF1-209ENST00000600310 C3P1Q6ZMU1 363 aa17.43■□□□□ 0.38
UPF1-209ENST00000600310 GGNQ86UU5 652 aa17.43■□□□□ 0.38
UPF1-209ENST00000600310 LILRA2Q8N149 483 aa17.43■□□□□ 0.38
UPF1-209ENST00000600310 MEIOBQ8N635 442 aa17.43■□□□□ 0.38
UPF1-209ENST00000600310 FAM156AQ8NDB6 213 aa17.43■□□□□ 0.38
UPF1-209ENST00000600310 ZPLD1Q8TCW7 415 aa17.43■□□□□ 0.38
UPF1-209ENST00000600310 SMPDL3BQ92485 455 aa17.43■□□□□ 0.38
UPF1-209ENST00000600310 SLC7A6OSQ96CW6 309 aaPredicted RBP17.43■□□□□ 0.38
UPF1-209ENST00000600310 VKORC1Q9BQB6 163 aa17.43■□□□□ 0.38
UPF1-209ENST00000600310 WFDC6Q9BQY6 131 aa17.43■□□□□ 0.38
UPF1-209ENST00000600310 SERINC1Q9NRX5 453 aa17.43■□□□□ 0.38
UPF1-209ENST00000600310 TESQ9UGI8 421 aaKnown RBP17.43■□□□□ 0.38
UPF1-209ENST00000600310 EGFL7Q9UHF1 273 aa17.43■□□□□ 0.38
UPF1-209ENST00000600310 PRPF19Q9UMS4 504 aaKnown RBP17.43■□□□□ 0.38
UPF1-209ENST00000600310 SLC5A6Q9Y289 635 aa17.43■□□□□ 0.38
UPF1-209ENST00000600310 MEMO1Q9Y316 297 aa17.43■□□□□ 0.38
UPF1-209ENST00000600310 MED12Q93074 2177 aa17.43■□□□□ 0.38
UPF1-209ENST00000600310 H0Y3Z8 333 aa17.42■□□□□ 0.38
UPF1-209ENST00000600310 M0R3H8 397 aa17.42■□□□□ 0.38
UPF1-209ENST00000600310 LRRTM2O43300 516 aa17.42■□□□□ 0.38
UPF1-209ENST00000600310 NCK1P16333 377 aa17.42■□□□□ 0.38
UPF1-209ENST00000600310 ME2P23368 584 aa17.42■□□□□ 0.38
UPF1-209ENST00000600310 TACR3P29371 465 aa17.42■□□□□ 0.38
UPF1-209ENST00000600310 POLR2HP52434 150 aaKnown RBP17.42■□□□□ 0.38
UPF1-209ENST00000600310 SELENOWP63302 87 aa17.42■□□□□ 0.38
UPF1-209ENST00000600310 C1orf185Q5T7R7 199 aa17.42■□□□□ 0.38
UPF1-209ENST00000600310 RTL6Q6ICC9 239 aa17.42■□□□□ 0.38
UPF1-209ENST00000600310 FJX1Q86VR8 437 aa17.42■□□□□ 0.38
UPF1-209ENST00000600310 ADGRG3Q86Y34 549 aa17.42■□□□□ 0.38
UPF1-209ENST00000600310 UBQLNLQ8IYU4 475 aa17.42■□□□□ 0.38
UPF1-209ENST00000600310 CADM2Q8N3J6 435 aa17.42■□□□□ 0.38
Retrieved 100 of 20,778 RNA–protein pairs in 39.9 ms