RNA–Protein interactions for RNA: ENST00000599543.3

PNKP-213, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

TSL 3

Gene PNKP, Length 986 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-213ENST00000599543 VPS33AQ96AX1 596 aa16.73■□□□□ 0.27
PNKP-213ENST00000599543 SMR3AQ99954 134 aa16.73■□□□□ 0.27
PNKP-213ENST00000599543 C12orf49Q9H741 205 aa16.73■□□□□ 0.27
PNKP-213ENST00000599543 SDR39U1Q9NRG7 319 aaPredicted RBP16.73■□□□□ 0.27
PNKP-213ENST00000599543 GPATCH2Q9NW75 528 aa16.73■□□□□ 0.27
PNKP-213ENST00000599543 CARD8Q9Y2G2 431 aa16.73■□□□□ 0.27
PNKP-213ENST00000599543 KCNE3Q9Y6H6 103 aa16.73■□□□□ 0.27
PNKP-213ENST00000599543 ABCA2Q9BZC7 2435 aa16.72■□□□□ 0.27
PNKP-213ENST00000599543 PRSS51A0A1B0GVH4 220 aa16.72■□□□□ 0.27
PNKP-213ENST00000599543 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP16.72■□□□□ 0.27
PNKP-213ENST00000599543 GTPBP1O00178 669 aaKnown RBP16.72■□□□□ 0.27
PNKP-213ENST00000599543 PGRP06401 933 aa16.72■□□□□ 0.27
PNKP-213ENST00000599543 THBDP07204 575 aa16.72■□□□□ 0.27
PNKP-213ENST00000599543 ADH6P28332 368 aa16.72■□□□□ 0.27
PNKP-213ENST00000599543 POLR2JP52435 117 aaKnown RBP16.72■□□□□ 0.27
PNKP-213ENST00000599543 SUMO3P55854 103 aaPredicted RBP16.72■□□□□ 0.27
PNKP-213ENST00000599543 STX1BP61266 288 aa16.72■□□□□ 0.27
PNKP-213ENST00000599543 ANXA8L1Q5VT79 327 aa16.72■□□□□ 0.27
PNKP-213ENST00000599543 BHLHB9Q6PI77 547 aa16.72■□□□□ 0.27
PNKP-213ENST00000599543 OR5D16Q8NGK9 328 aa16.72■□□□□ 0.27
PNKP-213ENST00000599543 FBXO27Q8NI29 283 aa16.72■□□□□ 0.27
PNKP-213ENST00000599543 RNF128Q8TEB7 428 aa16.72■□□□□ 0.27
PNKP-213ENST00000599543 CPNE4Q96A23 557 aaPredicted RBP16.72■□□□□ 0.27
PNKP-213ENST00000599543 PERPQ96FX8 193 aa16.72■□□□□ 0.27
PNKP-213ENST00000599543 ACTR6Q9GZN1 396 aa16.72■□□□□ 0.27
PNKP-213ENST00000599543 SERHL2Q9H4I8 314 aa16.72■□□□□ 0.27
PNKP-213ENST00000599543 ZIM2Q9NZV7 527 aa16.72■□□□□ 0.27
PNKP-213ENST00000599543 ICAM5Q9UMF0 924 aa16.72■□□□□ 0.27
PNKP-213ENST00000599543 PCDHGB4Q9UN71 923 aa16.72■□□□□ 0.27
PNKP-213ENST00000599543 GPC6Q9Y625 555 aaPredicted RBP16.72■□□□□ 0.27
PNKP-213ENST00000599543 NR5A2O00482 541 aa16.71■□□□□ 0.27
PNKP-213ENST00000599543 TROVE2P10155 538 aaKnown RBP eCLIP16.71■□□□□ 0.27
PNKP-213ENST00000599543 LOXP28300 417 aaPredicted RBP16.71■□□□□ 0.27
PNKP-213ENST00000599543 SHC1P29353 583 aa16.71■□□□□ 0.27
PNKP-213ENST00000599543 ATP12AP54707 1039 aa16.71■□□□□ 0.27
PNKP-213ENST00000599543 NR1H2P55055 460 aa16.71■□□□□ 0.27
PNKP-213ENST00000599543 LTBQ06643 244 aa16.71■□□□□ 0.27
PNKP-213ENST00000599543 RNPS1Q15287 305 aaKnown RBP16.71■□□□□ 0.27
PNKP-213ENST00000599543 TMEM201Q5SNT2 666 aa16.71■□□□□ 0.27
PNKP-213ENST00000599543 DDX59Q5T1V6 619 aaKnown RBP eCLIP16.71■□□□□ 0.27
PNKP-213ENST00000599543 CLEC9AQ6UXN8 241 aa16.71■□□□□ 0.27
PNKP-213ENST00000599543 Q71RC1 249 aaPredicted RBP16.71■□□□□ 0.27
PNKP-213ENST00000599543 OLIG3Q7RTU3 272 aa16.71■□□□□ 0.27
PNKP-213ENST00000599543 C6orf120Q7Z4R8 191 aa16.71■□□□□ 0.27
PNKP-213ENST00000599543 TMCO5AQ8N6Q1 288 aa16.71■□□□□ 0.27
PNKP-213ENST00000599543 ABHD3Q8WU67 409 aa16.71■□□□□ 0.27
PNKP-213ENST00000599543 ROBO4Q8WZ75 1007 aa16.71■□□□□ 0.27
PNKP-213ENST00000599543 SLC6A13Q9NSD5 602 aa16.71■□□□□ 0.27
PNKP-213ENST00000599543 DTNAQ9Y4J8 743 aa16.71■□□□□ 0.27
PNKP-213ENST00000599543 FAM171A2A8MVW0 826 aa16.7■□□□□ 0.26
PNKP-213ENST00000599543 OIP5O43482 229 aa16.7■□□□□ 0.26
PNKP-213ENST00000599543 CCR4P51679 360 aa16.7■□□□□ 0.26
PNKP-213ENST00000599543 DPY19L1Q2PZI1 675 aa16.7■□□□□ 0.26
PNKP-213ENST00000599543 NDUFAF6Q330K2 333 aa16.7■□□□□ 0.26
PNKP-213ENST00000599543 GTDC1Q4AE62 458 aa16.7■□□□□ 0.26
PNKP-213ENST00000599543 AGKQ53H12 422 aa16.7■□□□□ 0.26
PNKP-213ENST00000599543 YTHDF3Q7Z739 585 aaKnown RBP16.7■□□□□ 0.26
PNKP-213ENST00000599543 WFDC8Q8IUA0 241 aa16.7■□□□□ 0.26
PNKP-213ENST00000599543 FUNDC1Q8IVP5 155 aa16.7■□□□□ 0.26
PNKP-213ENST00000599543 PNPT1Q8TCS8 783 aaKnown RBP16.7■□□□□ 0.26
PNKP-213ENST00000599543 SLC35G5Q96KT7 338 aa16.7■□□□□ 0.26
PNKP-213ENST00000599543 Q96MF0 132 aa16.7■□□□□ 0.26
PNKP-213ENST00000599543 CCDC115Q96NT0 180 aa16.7■□□□□ 0.26
PNKP-213ENST00000599543 OR7D2Q96RA2 312 aa16.7■□□□□ 0.26
PNKP-213ENST00000599543 PANX1Q96RD7 426 aa16.7■□□□□ 0.26
PNKP-213ENST00000599543 SRXN1Q9BYN0 137 aa16.7■□□□□ 0.26
PNKP-213ENST00000599543 OR10A4Q9H209 315 aa16.7■□□□□ 0.26
PNKP-213ENST00000599543 CCDC134Q9H6E4 229 aa16.7■□□□□ 0.26
PNKP-213ENST00000599543 CCDC167Q9P0B6 97 aa16.7■□□□□ 0.26
PNKP-213ENST00000599543 KLHL13Q9P2N7 655 aa16.7■□□□□ 0.26
PNKP-213ENST00000599543 GPR52Q9Y2T5 361 aa16.7■□□□□ 0.26
PNKP-213ENST00000599543 USF3Q68DE3 2245 aa16.7■□□□□ 0.26
PNKP-213ENST00000599543 ZANQ9Y493 2812 aa16.69■□□□□ 0.26
PNKP-213ENST00000599543 FAM234BA2RU67 622 aa16.69■□□□□ 0.26
PNKP-213ENST00000599543 CCDC154A6NI56 674 aa16.69■□□□□ 0.26
PNKP-213ENST00000599543 ZNF264O43296 627 aa16.69■□□□□ 0.26
PNKP-213ENST00000599543 KLF4O43474 513 aa16.69■□□□□ 0.26
PNKP-213ENST00000599543 UBL4AP11441 157 aa16.69■□□□□ 0.26
PNKP-213ENST00000599543 PRKCAP17252 672 aa16.69■□□□□ 0.26
PNKP-213ENST00000599543 PSMB1P20618 241 aaKnown RBP16.69■□□□□ 0.26
PNKP-213ENST00000599543 SLC7A1P30825 629 aa16.69■□□□□ 0.26
PNKP-213ENST00000599543 SELENBP1Q13228 472 aa16.69■□□□□ 0.26
PNKP-213ENST00000599543 TOMM34Q15785 309 aaPredicted RBP16.69■□□□□ 0.26
PNKP-213ENST00000599543 TMEM176BQ3YBM2 270 aaPredicted RBP16.69■□□□□ 0.26
PNKP-213ENST00000599543 SLC2A7Q6PXP3 512 aa16.69■□□□□ 0.26
PNKP-213ENST00000599543 PRSS57Q6UWY2 283 aa16.69■□□□□ 0.26
PNKP-213ENST00000599543 ZNF704Q6ZNC4 412 aaPredicted RBP16.69■□□□□ 0.26
PNKP-213ENST00000599543 ZNF621Q6ZSS3 439 aa16.69■□□□□ 0.26
PNKP-213ENST00000599543 PLEKHM3Q6ZWE6 761 aa16.69■□□□□ 0.26
PNKP-213ENST00000599543 FCRLAQ7L513 359 aa16.69■□□□□ 0.26
PNKP-213ENST00000599543 GLB1L3Q8NCI6 653 aaPredicted RBP16.69■□□□□ 0.26
PNKP-213ENST00000599543 ATP6V1C2Q8NEY4 427 aa16.69■□□□□ 0.26
PNKP-213ENST00000599543 VPS37AQ8NEZ2 397 aa16.69■□□□□ 0.26
PNKP-213ENST00000599543 TOR1AIP2Q8NFQ8 470 aa16.69■□□□□ 0.26
PNKP-213ENST00000599543 GPR119Q8TDV5 335 aa16.69■□□□□ 0.26
PNKP-213ENST00000599543 ZFP90Q8TF47 636 aa16.69■□□□□ 0.26
PNKP-213ENST00000599543 PLPPR2Q96GM1 343 aa16.69■□□□□ 0.26
PNKP-213ENST00000599543 MRGPRX4Q96LA9 322 aa16.69■□□□□ 0.26
PNKP-213ENST00000599543 ZNF317Q96PQ6 595 aaPredicted RBP16.69■□□□□ 0.26
PNKP-213ENST00000599543 SLC35A5Q9BS91 424 aa16.69■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 45.5 ms