RNA–Protein interactions for RNA: ENST00000599322.5

LIG1-218, Transcript of DNA ligase 1, humanhuman

TSL 2

Gene LIG1, Length 620 nt, Biotype retained intron, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-218ENST00000599322 SLC25A43Q8WUT9 341 aaPredicted RBP12.69□□□□□ -0.38
LIG1-218ENST00000599322 WDR60Q8WVS4 1066 aa12.69□□□□□ -0.38
LIG1-218ENST00000599322 VPS33AQ96AX1 596 aa12.69□□□□□ -0.38
LIG1-218ENST00000599322 STARD4Q96DR4 205 aa12.69□□□□□ -0.38
LIG1-218ENST00000599322 DACH2Q96NX9 599 aa12.69□□□□□ -0.38
LIG1-218ENST00000599322 TPT1P8Q9HAU6 139 aa12.69□□□□□ -0.38
LIG1-218ENST00000599322 EXOSC3Q9NQT5 275 aaKnown RBP12.69□□□□□ -0.38
LIG1-218ENST00000599322 ACER3Q9NUN7 267 aa12.69□□□□□ -0.38
LIG1-218ENST00000599322 ZNF226Q9NYT6 803 aa12.69□□□□□ -0.38
LIG1-218ENST00000599322 CCDC167Q9P0B6 97 aa12.69□□□□□ -0.38
LIG1-218ENST00000599322 PRDM4Q9UKN5 801 aa12.69□□□□□ -0.38
LIG1-218ENST00000599322 ITGB1BP2Q9UKP3 347 aa12.69□□□□□ -0.38
LIG1-218ENST00000599322 C2CD3Q4AC94 2353 aa12.69□□□□□ -0.38
LIG1-218ENST00000599322 MED12Q93074 2177 aa12.69□□□□□ -0.38
LIG1-218ENST00000599322 A6NNC1 897 aa12.68□□□□□ -0.38
LIG1-218ENST00000599322 EVPLLA8MZ36 301 aa12.68□□□□□ -0.38
LIG1-218ENST00000599322 OIP5O43482 229 aa12.68□□□□□ -0.38
LIG1-218ENST00000599322 PRKD3O94806 890 aa12.68□□□□□ -0.38
LIG1-218ENST00000599322 CD79BP40259 229 aa12.68□□□□□ -0.38
LIG1-218ENST00000599322 KIR2DL2P43627 348 aaPredicted RBP12.68□□□□□ -0.38
LIG1-218ENST00000599322 PCYT1AP49585 367 aa12.68□□□□□ -0.38
LIG1-218ENST00000599322 ATP4BP51164 291 aa12.68□□□□□ -0.38
LIG1-218ENST00000599322 SESN3P58005 492 aa12.68□□□□□ -0.38
LIG1-218ENST00000599322 CSNK2A1P68400 391 aaPredicted RBP12.68□□□□□ -0.38
LIG1-218ENST00000599322 SKP2Q13309 424 aa12.68□□□□□ -0.38
LIG1-218ENST00000599322 SQLEQ14534 574 aa12.68□□□□□ -0.38
LIG1-218ENST00000599322 LARS2Q15031 903 aaKnown RBP12.68□□□□□ -0.38
LIG1-218ENST00000599322 DAZAP2Q15038 168 aaPredicted RBP12.68□□□□□ -0.38
LIG1-218ENST00000599322 SYPL1Q16563 259 aa12.68□□□□□ -0.38
LIG1-218ENST00000599322 AGKQ53H12 422 aa12.68□□□□□ -0.38
LIG1-218ENST00000599322 SLC25A53Q5H9E4 307 aa12.68□□□□□ -0.38
LIG1-218ENST00000599322 VWA1Q6PCB0 445 aa12.68□□□□□ -0.38
LIG1-218ENST00000599322 BTLAQ7Z6A9 289 aa12.68□□□□□ -0.38
LIG1-218ENST00000599322 ANKFN1Q8N957 763 aa12.68□□□□□ -0.38
LIG1-218ENST00000599322 OR9I1Q8NGQ6 314 aa12.68□□□□□ -0.38
LIG1-218ENST00000599322 LINC01560Q8TB33 94 aa12.68□□□□□ -0.38
LIG1-218ENST00000599322 SPDL1Q96EA4 605 aa12.68□□□□□ -0.38
LIG1-218ENST00000599322 CLEC4MQ9H2X3 399 aaPredicted RBP12.68□□□□□ -0.38
LIG1-218ENST00000599322 MRGBPQ9NV56 204 aa12.68□□□□□ -0.38
LIG1-218ENST00000599322 CORO2BQ9UQ03 480 aa12.68□□□□□ -0.38
LIG1-218ENST00000599322 CCDC168Q8NDH2 2452 aa12.68□□□□□ -0.38
LIG1-218ENST00000599322 DOCK7Q96N67 2140 aa12.67□□□□□ -0.38
LIG1-218ENST00000599322 SH3D21A4FU49 640 aa12.67□□□□□ -0.38
LIG1-218ENST00000599322 AGAP5A6NIR3 686 aa12.67□□□□□ -0.38
LIG1-218ENST00000599322 C16orf97H3BN30 126 aa12.67□□□□□ -0.38
LIG1-218ENST00000599322 CLIC1O00299 241 aa12.67□□□□□ -0.38
LIG1-218ENST00000599322 NR5A2O00482 541 aa12.67□□□□□ -0.38
LIG1-218ENST00000599322 AQP8O94778 261 aa12.67□□□□□ -0.38
LIG1-218ENST00000599322 TROVE2P10155 538 aaKnown RBP eCLIP12.67□□□□□ -0.38
LIG1-218ENST00000599322 ENPP1P22413 925 aa12.67□□□□□ -0.38
LIG1-218ENST00000599322 PGM1P36871 562 aa12.67□□□□□ -0.38
LIG1-218ENST00000599322 MRPL19P49406 292 aaKnown RBP12.67□□□□□ -0.38
LIG1-218ENST00000599322 RAC3P60763 192 aa12.67□□□□□ -0.38
LIG1-218ENST00000599322 COPZ1P61923 177 aa12.67□□□□□ -0.38
LIG1-218ENST00000599322 FADDQ13158 208 aa12.67□□□□□ -0.38
LIG1-218ENST00000599322 TOMM34Q15785 309 aaPredicted RBP12.67□□□□□ -0.38
LIG1-218ENST00000599322 EXOC3L2Q2M3D2 409 aa12.67□□□□□ -0.38
LIG1-218ENST00000599322 LIN52Q52LA3 116 aa12.67□□□□□ -0.38
LIG1-218ENST00000599322 AP1ARQ63HQ0 302 aa12.67□□□□□ -0.38
LIG1-218ENST00000599322 BEND4Q6ZU67 534 aa12.67□□□□□ -0.38
LIG1-218ENST00000599322 OLIG3Q7RTU3 272 aa12.67□□□□□ -0.38
LIG1-218ENST00000599322 GRINAQ7Z429 371 aa12.67□□□□□ -0.38
LIG1-218ENST00000599322 ADGRG7Q96K78 797 aa12.67□□□□□ -0.38
LIG1-218ENST00000599322 OR5B2Q96R09 309 aa12.67□□□□□ -0.38
LIG1-218ENST00000599322 MED18Q9BUE0 208 aa12.67□□□□□ -0.38
LIG1-218ENST00000599322 OPN3Q9H1Y3 402 aaPredicted RBP12.67□□□□□ -0.38
LIG1-218ENST00000599322 GP6Q9HCN6 339 aa12.67□□□□□ -0.38
LIG1-218ENST00000599322 RASSF1Q9NS23 344 aa12.67□□□□□ -0.38
LIG1-218ENST00000599322 KLHL9Q9P2J3 617 aa12.67□□□□□ -0.38
LIG1-218ENST00000599322 KCNE5Q9UJ90 142 aa12.67□□□□□ -0.38
LIG1-218ENST00000599322 CLEC4AQ9UMR7 237 aa12.67□□□□□ -0.38
LIG1-218ENST00000599322 IFT52Q9Y366 437 aa12.67□□□□□ -0.38
LIG1-218ENST00000599322 A0A096LPI6 279 aa12.66□□□□□ -0.38
LIG1-218ENST00000599322 A0A0G2JPF8 293 aa12.66□□□□□ -0.38
LIG1-218ENST00000599322 HNRNPCL2B2RXH8 293 aa12.66□□□□□ -0.38
LIG1-218ENST00000599322 HNRNPCL3B7ZW38 293 aa12.66□□□□□ -0.38
LIG1-218ENST00000599322 SULT2B1O00204 365 aa12.66□□□□□ -0.38
LIG1-218ENST00000599322 HNRNPCL1O60812 293 aaKnown RBP12.66□□□□□ -0.38
LIG1-218ENST00000599322 SS18L1O75177 396 aaPredicted RBP12.66□□□□□ -0.38
LIG1-218ENST00000599322 CTAG2O75638 210 aa12.66□□□□□ -0.38
LIG1-218ENST00000599322 BCHEP06276 602 aa12.66□□□□□ -0.38
LIG1-218ENST00000599322 HNRNPCL4P0DMR1 293 aa12.66□□□□□ -0.38
LIG1-218ENST00000599322 ETFAP13804 333 aa12.66□□□□□ -0.38
LIG1-218ENST00000599322 NID1P14543 1247 aa12.66□□□□□ -0.38
LIG1-218ENST00000599322 IDH2P48735 452 aaKnown RBP12.66□□□□□ -0.38
LIG1-218ENST00000599322 CLK1P49759 484 aaKnown RBP12.66□□□□□ -0.38
LIG1-218ENST00000599322 MAP2K6P52564 334 aa12.66□□□□□ -0.38
LIG1-218ENST00000599322 RIPPLY3P57055 190 aa12.66□□□□□ -0.38
LIG1-218ENST00000599322 MAPK14Q16539 360 aa12.66□□□□□ -0.38
LIG1-218ENST00000599322 CTU2Q2VPK5 515 aaKnown RBP12.66□□□□□ -0.38
LIG1-218ENST00000599322 COX20Q5RI15 118 aa12.66□□□□□ -0.38
LIG1-218ENST00000599322 SLC2A7Q6PXP3 512 aa12.66□□□□□ -0.38
LIG1-218ENST00000599322 BLOC1S3Q6QNY0 202 aa12.66□□□□□ -0.38
LIG1-218ENST00000599322 PLEKHM3Q6ZWE6 761 aa12.66□□□□□ -0.38
LIG1-218ENST00000599322 FCRLAQ7L513 359 aa12.66□□□□□ -0.38
LIG1-218ENST00000599322 ZNF550Q7Z398 422 aa12.66□□□□□ -0.38
LIG1-218ENST00000599322 ZNF610Q8N9Z0 462 aa12.66□□□□□ -0.38
LIG1-218ENST00000599322 OR52P1PQ8NH57 321 aa12.66□□□□□ -0.38
LIG1-218ENST00000599322 STON2Q8WXE9 905 aa12.66□□□□□ -0.38
LIG1-218ENST00000599322 ROBO4Q8WZ75 1007 aa12.66□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 38.6 ms