RNA–Protein interactions for RNA: ENST00000598558.5

SHKBP1-217, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 3

Gene SHKBP1, Length 579 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-217ENST00000598558 C11orf65Q8NCR3 313 aa12.78□□□□□ -0.36
SHKBP1-217ENST00000598558 ATP6V1C2Q8NEY4 427 aa12.78□□□□□ -0.36
SHKBP1-217ENST00000598558 GPR32P1Q8NGA4 272 aa12.78□□□□□ -0.36
SHKBP1-217ENST00000598558 FIG4Q92562 907 aa12.78□□□□□ -0.36
SHKBP1-217ENST00000598558 DTNBP1Q96EV8 351 aa12.78□□□□□ -0.36
SHKBP1-217ENST00000598558 UCN2Q96RP3 112 aa12.78□□□□□ -0.36
SHKBP1-217ENST00000598558 EFCAB1Q9HAE3 211 aa12.78□□□□□ -0.36
SHKBP1-217ENST00000598558 CTPS2Q9NRF8 586 aa12.78□□□□□ -0.36
SHKBP1-217ENST00000598558 CLCF1Q9UBD9 225 aa12.78□□□□□ -0.36
SHKBP1-217ENST00000598558 ZNF232Q9UNY5 417 aa12.78□□□□□ -0.36
SHKBP1-217ENST00000598558 IFT52Q9Y366 437 aa12.78□□□□□ -0.36
SHKBP1-217ENST00000598558 DNAJC13O75165 2243 aa12.78□□□□□ -0.36
SHKBP1-217ENST00000598558 GTF3C1Q12789 2109 aa12.77□□□□□ -0.36
SHKBP1-217ENST00000598558 MBD3L4A6NDZ8 208 aaPredicted RBP12.77□□□□□ -0.37
SHKBP1-217ENST00000598558 MBD3L3A6NE82 208 aaPredicted RBP12.77□□□□□ -0.37
SHKBP1-217ENST00000598558 CFAP73A6NFT4 308 aa12.77□□□□□ -0.37
SHKBP1-217ENST00000598558 MBD3L5A6NJ08 208 aaPredicted RBP12.77□□□□□ -0.37
SHKBP1-217ENST00000598558 LINC01387J3KSC0 135 aa12.77□□□□□ -0.37
SHKBP1-217ENST00000598558 NME4O00746 187 aa12.77□□□□□ -0.37
SHKBP1-217ENST00000598558 TPST2O60704 377 aa12.77□□□□□ -0.37
SHKBP1-217ENST00000598558 COL8A1P27658 744 aa12.77□□□□□ -0.37
SHKBP1-217ENST00000598558 ADH6P28332 368 aa12.77□□□□□ -0.37
SHKBP1-217ENST00000598558 PCGF2P35227 344 aa12.77□□□□□ -0.37
SHKBP1-217ENST00000598558 SFTPDP35247 375 aa12.77□□□□□ -0.37
SHKBP1-217ENST00000598558 PTGER4P35408 488 aa12.77□□□□□ -0.37
SHKBP1-217ENST00000598558 EIF1P41567 113 aaKnown RBP12.77□□□□□ -0.37
SHKBP1-217ENST00000598558 SLC6A8P48029 635 aa12.77□□□□□ -0.37
SHKBP1-217ENST00000598558 ZNF136P52737 540 aa12.77□□□□□ -0.37
SHKBP1-217ENST00000598558 MERTKQ12866 999 aa12.77□□□□□ -0.37
SHKBP1-217ENST00000598558 FOXF2Q12947 444 aa12.77□□□□□ -0.37
SHKBP1-217ENST00000598558 LARS2Q15031 903 aaKnown RBP12.77□□□□□ -0.37
SHKBP1-217ENST00000598558 DUSP7Q16829 419 aa12.77□□□□□ -0.37
SHKBP1-217ENST00000598558 RIPPLY2Q5TAB7 128 aa12.77□□□□□ -0.37
SHKBP1-217ENST00000598558 FAM91A1Q658Y4 838 aa12.77□□□□□ -0.37
SHKBP1-217ENST00000598558 DHRS4L2Q6PKH6 230 aa12.77□□□□□ -0.37
SHKBP1-217ENST00000598558 HACD2Q6Y1H2 254 aa12.77□□□□□ -0.37
SHKBP1-217ENST00000598558 LILRA2Q8N149 483 aa12.77□□□□□ -0.37
SHKBP1-217ENST00000598558 ZNF808Q8N4W9 903 aaPredicted RBP12.77□□□□□ -0.37
SHKBP1-217ENST00000598558 SMYD1Q8NB12 490 aa12.77□□□□□ -0.37
SHKBP1-217ENST00000598558 OR10Q1Q8NGQ4 319 aa12.77□□□□□ -0.37
SHKBP1-217ENST00000598558 MBD3L2Q8NHZ7 208 aaPredicted RBP12.77□□□□□ -0.37
SHKBP1-217ENST00000598558 ST8SIA1Q92185 356 aa12.77□□□□□ -0.37
SHKBP1-217ENST00000598558 RND1Q92730 232 aa12.77□□□□□ -0.37
SHKBP1-217ENST00000598558 TAMM41Q96BW9 452 aa12.77□□□□□ -0.37
SHKBP1-217ENST00000598558 SDCCAG3Q96C92 435 aa12.77□□□□□ -0.37
SHKBP1-217ENST00000598558 CMTM5Q96DZ9 223 aa12.77□□□□□ -0.37
SHKBP1-217ENST00000598558 MRGPRX4Q96LA9 322 aa12.77□□□□□ -0.37
SHKBP1-217ENST00000598558 LRRC37BQ96QE4 947 aa12.77□□□□□ -0.37
SHKBP1-217ENST00000598558 ECSITQ9BQ95 431 aa12.77□□□□□ -0.37
SHKBP1-217ENST00000598558 UCK2Q9BZX2 261 aa12.77□□□□□ -0.37
SHKBP1-217ENST00000598558 CALHM2Q9HA72 323 aa12.77□□□□□ -0.37
SHKBP1-217ENST00000598558 KIAA1549Q9HCM3 1950 aa12.77□□□□□ -0.37
SHKBP1-217ENST00000598558 LRRK2Q5S007 2527 aa12.76□□□□□ -0.37
SHKBP1-217ENST00000598558 FAM47E-STBD1D6RA91 191 aa12.76□□□□□ -0.37
SHKBP1-217ENST00000598558 FAAHO00519 579 aa12.76□□□□□ -0.37
SHKBP1-217ENST00000598558 EIF1AYO14602 144 aaKnown RBP12.76□□□□□ -0.37
SHKBP1-217ENST00000598558 TNFSF11O14788 317 aa12.76□□□□□ -0.37
SHKBP1-217ENST00000598558 ADAMDEC1O15204 470 aa12.76□□□□□ -0.37
SHKBP1-217ENST00000598558 CXCL13O43927 109 aa12.76□□□□□ -0.37
SHKBP1-217ENST00000598558 AQP8O94778 261 aa12.76□□□□□ -0.37
SHKBP1-217ENST00000598558 KLK2P20151 261 aa12.76□□□□□ -0.37
SHKBP1-217ENST00000598558 CD247P20963 164 aa12.76□□□□□ -0.37
SHKBP1-217ENST00000598558 GRNP28799 593 aaKnown RBP12.76□□□□□ -0.37
SHKBP1-217ENST00000598558 PRKAR1BP31321 381 aa12.76□□□□□ -0.37
SHKBP1-217ENST00000598558 NUDT2P50583 147 aa12.76□□□□□ -0.37
SHKBP1-217ENST00000598558 SLC7A2P52569 658 aa12.76□□□□□ -0.37
SHKBP1-217ENST00000598558 AGFG1P52594 562 aaKnown RBP12.76□□□□□ -0.37
SHKBP1-217ENST00000598558 TMEM176BQ3YBM2 270 aaPredicted RBP12.76□□□□□ -0.37
SHKBP1-217ENST00000598558 MTFR2Q6P444 385 aa12.76□□□□□ -0.37
SHKBP1-217ENST00000598558 CCDC80Q76M96 950 aa12.76□□□□□ -0.37
SHKBP1-217ENST00000598558 LACC1Q8IV20 430 aa12.76□□□□□ -0.37
SHKBP1-217ENST00000598558 MEIOBQ8N635 442 aa12.76□□□□□ -0.37
SHKBP1-217ENST00000598558 OR4D11Q8NGI4 311 aa12.76□□□□□ -0.37
SHKBP1-217ENST00000598558 OR10D3Q8NH80 312 aa12.76□□□□□ -0.37
SHKBP1-217ENST00000598558 ZNF563Q8TA94 476 aa12.76□□□□□ -0.37
SHKBP1-217ENST00000598558 DNAJA3Q96EY1 480 aa12.76□□□□□ -0.37
SHKBP1-217ENST00000598558 REXO5Q96IC2 774 aaKnown RBP12.76□□□□□ -0.37
SHKBP1-217ENST00000598558 SH3GL1Q99961 368 aa12.76□□□□□ -0.37
SHKBP1-217ENST00000598558 PINK1Q9BXM7 581 aa12.76□□□□□ -0.37
SHKBP1-217ENST00000598558 SRXN1Q9BYN0 137 aa12.76□□□□□ -0.37
SHKBP1-217ENST00000598558 ADAM19Q9H013 955 aa12.76□□□□□ -0.37
SHKBP1-217ENST00000598558 COQ10BQ9H8M1 238 aa12.76□□□□□ -0.37
SHKBP1-217ENST00000598558 OSGIN1Q9UJX0 560 aa12.76□□□□□ -0.37
SHKBP1-217ENST00000598558 PACSIN3Q9UKS6 424 aa12.76□□□□□ -0.37
SHKBP1-217ENST00000598558 ANGPT4Q9Y264 503 aa12.76□□□□□ -0.37
SHKBP1-217ENST00000598558 COL12A1Q99715 3063 aa12.76□□□□□ -0.37
SHKBP1-217ENST00000598558 A0A1W2PNR3 127 aa12.75□□□□□ -0.37
SHKBP1-217ENST00000598558 C19orf84I3L1E1 186 aa12.75□□□□□ -0.37
SHKBP1-217ENST00000598558 DCTN3O75935 186 aa12.75□□□□□ -0.37
SHKBP1-217ENST00000598558 T-ENOLP0DO92 83 aa12.75□□□□□ -0.37
SHKBP1-217ENST00000598558 GP1BBP13224 206 aa12.75□□□□□ -0.37
SHKBP1-217ENST00000598558 CCNA2P20248 432 aa12.75□□□□□ -0.37
SHKBP1-217ENST00000598558 HTR2AP28223 471 aa12.75□□□□□ -0.37
SHKBP1-217ENST00000598558 ELK4P28324 431 aa12.75□□□□□ -0.37
SHKBP1-217ENST00000598558 TACR3P29371 465 aa12.75□□□□□ -0.37
SHKBP1-217ENST00000598558 TIMP3P35625 211 aa12.75□□□□□ -0.37
SHKBP1-217ENST00000598558 KCNJ5P48544 419 aa12.75□□□□□ -0.37
SHKBP1-217ENST00000598558 SMSP52788 366 aa12.75□□□□□ -0.37
SHKBP1-217ENST00000598558 PSME3P61289 254 aa12.75□□□□□ -0.37
SHKBP1-217ENST00000598558 LIPEQ05469 1076 aa12.75□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 41.8 ms