RNA–Protein interactions for RNA: ENST00000598209.5

UPF1-205, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 4

Gene UPF1, Length 551 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-205ENST00000598209 RUNDC3AQ59EK9 446 aa12.44□□□□□ -0.42
UPF1-205ENST00000598209 PDSS1Q5T2R2 415 aa12.44□□□□□ -0.42
UPF1-205ENST00000598209 PRAMEF8Q5VWM4 474 aa12.44□□□□□ -0.42
UPF1-205ENST00000598209 PRAMEF7Q5VXH5 474 aa12.44□□□□□ -0.42
UPF1-205ENST00000598209 HBMQ6B0K9 141 aa12.44□□□□□ -0.42
UPF1-205ENST00000598209 OR2A2Q6IF42 318 aa12.44□□□□□ -0.42
UPF1-205ENST00000598209 PPP4R4Q6NUP7 873 aa12.44□□□□□ -0.42
UPF1-205ENST00000598209 ZNF836Q6ZNA1 936 aa12.44□□□□□ -0.42
UPF1-205ENST00000598209 ACBD4Q8NC06 268 aa12.44□□□□□ -0.42
UPF1-205ENST00000598209 ATP6V1C2Q8NEY4 427 aa12.44□□□□□ -0.42
UPF1-205ENST00000598209 NFKBIDQ8NI38 313 aa12.44□□□□□ -0.42
UPF1-205ENST00000598209 ZNF563Q8TA94 476 aa12.44□□□□□ -0.42
UPF1-205ENST00000598209 CGREF1Q99674 301 aa12.44□□□□□ -0.42
UPF1-205ENST00000598209 SPOCK3Q9BQ16 436 aa12.44□□□□□ -0.42
UPF1-205ENST00000598209 SFXN3Q9BWM7 321 aa12.44□□□□□ -0.42
UPF1-205ENST00000598209 CACYBPQ9HB71 228 aaKnown RBP12.44□□□□□ -0.42
UPF1-205ENST00000598209 BCL2L10Q9HD36 194 aa12.44□□□□□ -0.42
UPF1-205ENST00000598209 ACER3Q9NUN7 267 aa12.44□□□□□ -0.42
UPF1-205ENST00000598209 PAQR5Q9NXK6 330 aaPredicted RBP12.44□□□□□ -0.42
UPF1-205ENST00000598209 ZNF443Q9Y2A4 671 aaPredicted RBP12.44□□□□□ -0.42
UPF1-205ENST00000598209 MPDZO75970 2070 aa12.44□□□□□ -0.42
UPF1-205ENST00000598209 CRYBG3Q68DQ2 2970 aa12.43□□□□□ -0.42
UPF1-205ENST00000598209 A0A1W2PNV4 684 aa12.43□□□□□ -0.42
UPF1-205ENST00000598209 EEF1E1-BLOC1S5C9J1V9 151 aa12.43□□□□□ -0.42
UPF1-205ENST00000598209 FBP2O00757 339 aa12.43□□□□□ -0.42
UPF1-205ENST00000598209 AP3D1O14617 1153 aa12.43□□□□□ -0.42
UPF1-205ENST00000598209 EEF1E1O43324 174 aaKnown RBP12.43□□□□□ -0.42
UPF1-205ENST00000598209 ADAM11O75078 769 aa12.43□□□□□ -0.42
UPF1-205ENST00000598209 AQP8O94778 261 aa12.43□□□□□ -0.42
UPF1-205ENST00000598209 PGM3O95394 542 aa12.43□□□□□ -0.42
UPF1-205ENST00000598209 SYNGR4O95473 234 aa12.43□□□□□ -0.42
UPF1-205ENST00000598209 THBS1P07996 1170 aa12.43□□□□□ -0.42
UPF1-205ENST00000598209 FCGR2AP12318 317 aa12.43□□□□□ -0.42
UPF1-205ENST00000598209 IGFBP2P18065 325 aa12.43□□□□□ -0.42
UPF1-205ENST00000598209 MERTKQ12866 999 aa12.43□□□□□ -0.42
UPF1-205ENST00000598209 LARS2Q15031 903 aaKnown RBP12.43□□□□□ -0.42
UPF1-205ENST00000598209 TMEM176BQ3YBM2 270 aaPredicted RBP12.43□□□□□ -0.42
UPF1-205ENST00000598209 C3orf33Q6P1S2 294 aa12.43□□□□□ -0.42
UPF1-205ENST00000598209 PLEKHM3Q6ZWE6 761 aa12.43□□□□□ -0.42
UPF1-205ENST00000598209 BBS10Q8TAM1 723 aa12.43□□□□□ -0.42
UPF1-205ENST00000598209 OSTF1Q92882 214 aa12.43□□□□□ -0.42
UPF1-205ENST00000598209 ANKRD27Q96NW4 1050 aa12.43□□□□□ -0.42
UPF1-205ENST00000598209 PRRG4Q9BZD6 226 aa12.43□□□□□ -0.42
UPF1-205ENST00000598209 TRIM8Q9BZR9 551 aa12.43□□□□□ -0.42
UPF1-205ENST00000598209 RNF122Q9H9V4 155 aa12.43□□□□□ -0.42
UPF1-205ENST00000598209 RLIMQ9NVW2 624 aa12.43□□□□□ -0.42
UPF1-205ENST00000598209 MCTS1Q9ULC4 181 aaKnown RBP12.43□□□□□ -0.42
UPF1-205ENST00000598209 IFT52Q9Y366 437 aa12.43□□□□□ -0.42
UPF1-205ENST00000598209 CDHR4A6H8M9 788 aa12.42□□□□□ -0.42
UPF1-205ENST00000598209 SYT5O00445 386 aa12.42□□□□□ -0.42
UPF1-205ENST00000598209 DYNC1I1O14576 645 aa12.42□□□□□ -0.42
UPF1-205ENST00000598209 TNFSF13O75888 250 aa12.42□□□□□ -0.42
UPF1-205ENST00000598209 CRHP06850 196 aa12.42□□□□□ -0.42
UPF1-205ENST00000598209 ADSLP30566 484 aaPredicted RBP12.42□□□□□ -0.42
UPF1-205ENST00000598209 UQCRC1P31930 480 aa12.42□□□□□ -0.42
UPF1-205ENST00000598209 IDH2P48735 452 aaKnown RBP12.42□□□□□ -0.42
UPF1-205ENST00000598209 DLX5P56178 289 aa12.42□□□□□ -0.42
UPF1-205ENST00000598209 CARD18P57730 90 aa12.42□□□□□ -0.42
UPF1-205ENST00000598209 EEF1A1P68104 462 aaKnown RBP12.42□□□□□ -0.42
UPF1-205ENST00000598209 CDK6Q00534 326 aa12.42□□□□□ -0.42
UPF1-205ENST00000598209 EPS8Q12929 822 aa12.42□□□□□ -0.42
UPF1-205ENST00000598209 SELPLGQ14242 412 aa12.42□□□□□ -0.42
UPF1-205ENST00000598209 CAPRIN1Q14444 709 aaKnown RBP12.42□□□□□ -0.42
UPF1-205ENST00000598209 MAPRE2Q15555 327 aa12.42□□□□□ -0.42
UPF1-205ENST00000598209 FBXL19-AS1Q494R0 122 aa12.42□□□□□ -0.42
UPF1-205ENST00000598209 RNF220Q5VTB9 566 aa12.42□□□□□ -0.42
UPF1-205ENST00000598209 EEF1A1P5Q5VTE0 462 aa12.42□□□□□ -0.42
UPF1-205ENST00000598209 MCEMP1Q8IX19 187 aa12.42□□□□□ -0.42
UPF1-205ENST00000598209 DMRTC2Q8IXT2 367 aaPredicted RBP12.42□□□□□ -0.42
UPF1-205ENST00000598209 ZNF440Q8IYI8 595 aa12.42□□□□□ -0.42
UPF1-205ENST00000598209 CLIP4Q8N3C7 705 aa12.42□□□□□ -0.42
UPF1-205ENST00000598209 CNEP1R1Q8N9A8 125 aa12.42□□□□□ -0.42
UPF1-205ENST00000598209 RNASE6Q93091 150 aaKnown RBP12.42□□□□□ -0.42
UPF1-205ENST00000598209 LRRC46Q96FV0 321 aa12.42□□□□□ -0.42
UPF1-205ENST00000598209 CCDC106Q9BWC9 280 aa12.42□□□□□ -0.42
UPF1-205ENST00000598209 PIGMQ9H3S5 423 aa12.42□□□□□ -0.42
UPF1-205ENST00000598209 TMEM38AQ9H6F2 299 aa12.42□□□□□ -0.42
UPF1-205ENST00000598209 COQ10BQ9H8M1 238 aa12.42□□□□□ -0.42
UPF1-205ENST00000598209 CTPS2Q9NRF8 586 aa12.42□□□□□ -0.42
UPF1-205ENST00000598209 SERINC1Q9NRX5 453 aa12.42□□□□□ -0.42
UPF1-205ENST00000598209 JKAMPQ9P055 326 aa12.42□□□□□ -0.42
UPF1-205ENST00000598209 ZNF232Q9UNY5 417 aa12.42□□□□□ -0.42
UPF1-205ENST00000598209 CAPN7Q9Y6W3 813 aa12.42□□□□□ -0.42
UPF1-205ENST00000598209 A0A1W2PNR3 127 aa12.41□□□□□ -0.42
UPF1-205ENST00000598209 CFAP73A6NFT4 308 aa12.41□□□□□ -0.42
UPF1-205ENST00000598209 BBIP1A8MTZ0 92 aa12.41□□□□□ -0.42
UPF1-205ENST00000598209 FAAHO00519 579 aa12.41□□□□□ -0.42
UPF1-205ENST00000598209 PABPC4LP0CB38 370 aaKnown RBP12.41□□□□□ -0.42
UPF1-205ENST00000598209 GKN3PP0CG01 181 aa12.41□□□□□ -0.42
UPF1-205ENST00000598209 PRF1P14222 555 aa12.41□□□□□ -0.42
UPF1-205ENST00000598209 UQCRBP14927 111 aa12.41□□□□□ -0.42
UPF1-205ENST00000598209 ETS2P15036 469 aa12.41□□□□□ -0.42
UPF1-205ENST00000598209 SLC7A1P30825 629 aa12.41□□□□□ -0.42
UPF1-205ENST00000598209 APOBEC1P41238 236 aaKnown RBP12.41□□□□□ -0.42
UPF1-205ENST00000598209 KIR2DL2P43627 348 aaPredicted RBP12.41□□□□□ -0.42
UPF1-205ENST00000598209 SEC24CP53992 1094 aa12.41□□□□□ -0.42
UPF1-205ENST00000598209 MTPNP58546 118 aa12.41□□□□□ -0.42
UPF1-205ENST00000598209 SIRPAP78324 504 aa12.41□□□□□ -0.42
UPF1-205ENST00000598209 SCARB2Q14108 478 aa12.41□□□□□ -0.42
UPF1-205ENST00000598209 ADRM1Q16186 407 aa12.41□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 57.6 ms